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Magnesium in PDB 7zrm: Cryo-Em Map of the Unphosphorylated Kdpfabc Complex in the E1-P_ADP Conformation, Under Turnover Conditions

Enzymatic activity of Cryo-Em Map of the Unphosphorylated Kdpfabc Complex in the E1-P_ADP Conformation, Under Turnover Conditions

All present enzymatic activity of Cryo-Em Map of the Unphosphorylated Kdpfabc Complex in the E1-P_ADP Conformation, Under Turnover Conditions:
7.2.2.6;

Other elements in 7zrm:

The structure of Cryo-Em Map of the Unphosphorylated Kdpfabc Complex in the E1-P_ADP Conformation, Under Turnover Conditions also contains other interesting chemical elements:

Potassium (K) 5 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Cryo-Em Map of the Unphosphorylated Kdpfabc Complex in the E1-P_ADP Conformation, Under Turnover Conditions (pdb code 7zrm). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Cryo-Em Map of the Unphosphorylated Kdpfabc Complex in the E1-P_ADP Conformation, Under Turnover Conditions, PDB code: 7zrm:

Magnesium binding site 1 out of 1 in 7zrm

Go back to Magnesium Binding Sites List in 7zrm
Magnesium binding site 1 out of 1 in the Cryo-Em Map of the Unphosphorylated Kdpfabc Complex in the E1-P_ADP Conformation, Under Turnover Conditions


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Map of the Unphosphorylated Kdpfabc Complex in the E1-P_ADP Conformation, Under Turnover Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg702

b:93.2
occ:1.00
OP3 B:PHD307 2.6 83.1 1.0
O1B B:ADP701 3.1 112.3 1.0
O3B B:ADP701 3.5 112.3 1.0
PB B:ADP701 3.8 112.3 1.0
OD2 B:ASP172 3.9 95.7 1.0
P B:PHD307 3.9 83.1 1.0
O3A B:ADP701 4.1 112.3 1.0
OP1 B:PHD307 4.2 83.1 1.0
OD1 B:ASP172 4.7 95.7 1.0
OD1 B:PHD307 4.7 83.1 1.0
CG B:ASP172 4.7 95.7 1.0
CB B:ALA379 4.7 108.8 1.0
OP2 B:PHD307 5.0 83.1 1.0

Reference:

J.M.Silberberg, C.Stock, L.Hielkema, R.A.Corey, J.Rheinberger, D.Wunnicke, V.R.A.Dubach, P.J.Stansfeld, I.Hanelt, C.Paulino. Inhibited Kdpfabc Transitions Into An E1 Off-Cycle State. Elife V. 11 2022.
ISSN: ESSN 2050-084X
PubMed: 36255052
DOI: 10.7554/ELIFE.80988
Page generated: Thu Oct 3 17:04:37 2024

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