Magnesium in PDB 7ztl: Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex

All present enzymatic activity of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex:
2.7.11.1;

The structure of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex, PDB code: 7ztl was solved by M.Diebold, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.17 / 1.90
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.614, 86.614, 91.789, 90, 90, 120
R / Rfree (%)	16.3 / 19.3

The structure of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Magnesium atom in the Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex (pdb code 7ztl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex, PDB code: 7ztl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg502 b:32.0 occ:1.00 O1B A:ADP501 2.0 30.0 1.0 OD1 A:ASP274 2.1 30.0 1.0 O6 A:BCN506 2.1 32.3 1.0 O21 A:BCN506 2.1 29.9 1.0 O4 A:BCN506 2.2 30.6 1.0 N1 A:BCN506 2.2 33.8 1.0 OD2 A:ASP274 2.5 29.5 1.0 CG A:ASP274 2.7 30.4 1.0 C2 A:BCN506 2.9 34.4 1.0 C3 A:BCN506 2.9 30.0 1.0 C6 A:BCN506 3.0 29.9 1.0 C5 A:BCN506 3.0 35.1 1.0 C1 A:BCN506 3.0 31.8 1.0 C4 A:BCN506 3.0 31.7 1.0 PB A:ADP501 3.2 31.8 1.0 O3B A:ADP501 3.6 30.4 1.0 O A:HOH614 3.8 32.9 1.0 NZ A:LYS162 3.9 29.9 1.0 MG A:MG503 4.1 28.2 1.0 O2B A:ADP501 4.1 30.7 1.0 O22 A:BCN506 4.1 30.2 1.0 CB A:ASP274 4.2 28.6 1.0 O A:HOH648 4.2 31.0 1.0 OE1 A:GLU181 4.3 37.4 1.0 O3A A:ADP501 4.4 28.0 1.0 CA A:GLY276 4.4 33.7 1.0 N A:GLY276 4.5 31.3 1.0 O2A A:ADP501 4.8 30.5 1.0 CA A:ASP274 4.8 28.8 1.0 O A:ASP274 4.9 31.0 1.0 PA A:ADP501 4.9 30.4 1.0 C A:ASP274 4.9 31.5 1.0 CE A:LYS162 5.0 28.1 1.0 CD A:GLU181 5.0 34.1 1.0 OE2 A:GLU181 5.0 35.4 1.0

Magnesium binding site 2 out of 2 in the Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg503 b:28.2 occ:1.00 O3B A:ADP501 2.0 30.4 1.0 O2A A:ADP501 2.1 30.5 1.0 OD2 A:ASP274 2.1 29.5 1.0 O A:HOH680 2.1 28.4 1.0 OD1 A:ASN261 2.1 30.0 1.0 O A:HOH648 2.1 31.0 1.0 CG A:ASP274 3.1 30.4 1.0 CG A:ASN261 3.1 30.3 1.0 PB A:ADP501 3.1 31.8 1.0 PA A:ADP501 3.3 30.4 1.0 O3A A:ADP501 3.5 28.0 1.0 ND2 A:ASN261 3.5 28.7 1.0 O21 A:BCN506 3.6 29.9 1.0 O1B A:ADP501 3.6 30.0 1.0 CB A:ASP274 3.7 28.6 1.0 O A:HOH632 4.0 38.3 1.0 MG A:MG502 4.1 32.0 1.0 OD1 A:ASP274 4.2 30.0 1.0 O A:HOH639 4.2 40.5 1.0 O A:HOH749 4.3 50.6 1.0 O1A A:ADP501 4.3 30.3 1.0 O5' A:ADP501 4.3 30.6 1.0 O A:HOH715 4.4 30.8 1.0 C5' A:ADP501 4.5 30.5 1.0 O2B A:ADP501 4.5 30.7 1.0 CB A:ASN261 4.5 24.8 1.0 O A:GLU260 4.5 36.4 1.0 C2 A:BCN506 4.6 34.4 1.0 CA A:ASN261 4.8 29.4 1.0 O3' A:ADP501 4.9 29.9 1.0 C A:GLU260 5.0 32.8 1.0

M.Diebold, L.Schonemann, M.Eilers, C.Sotriffer, H.Schindelin. Crystal Structure of A Covalently Linked Aurora-A-Mycn Complex Acta Crystallogr.,Sect.D V. 79 1 2023.
ISSN: ESSN 1399-0047