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Magnesium in PDB 7ztl: Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex

Enzymatic activity of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex

All present enzymatic activity of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex, PDB code: 7ztl was solved by M.Diebold, H.Schindelin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.17 / 1.90
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 86.614, 86.614, 91.789, 90, 90, 120
R / Rfree (%) 16.3 / 19.3

Other elements in 7ztl:

The structure of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex also contains other interesting chemical elements:

Sodium (Na) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex (pdb code 7ztl). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex, PDB code: 7ztl:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7ztl

Go back to Magnesium Binding Sites List in 7ztl
Magnesium binding site 1 out of 2 in the Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg502

b:32.0
occ:1.00
O1B A:ADP501 2.0 30.0 1.0
OD1 A:ASP274 2.1 30.0 1.0
O6 A:BCN506 2.1 32.3 1.0
O21 A:BCN506 2.1 29.9 1.0
O4 A:BCN506 2.2 30.6 1.0
N1 A:BCN506 2.2 33.8 1.0
OD2 A:ASP274 2.5 29.5 1.0
CG A:ASP274 2.7 30.4 1.0
C2 A:BCN506 2.9 34.4 1.0
C3 A:BCN506 2.9 30.0 1.0
C6 A:BCN506 3.0 29.9 1.0
C5 A:BCN506 3.0 35.1 1.0
C1 A:BCN506 3.0 31.8 1.0
C4 A:BCN506 3.0 31.7 1.0
PB A:ADP501 3.2 31.8 1.0
O3B A:ADP501 3.6 30.4 1.0
O A:HOH614 3.8 32.9 1.0
NZ A:LYS162 3.9 29.9 1.0
MG A:MG503 4.1 28.2 1.0
O2B A:ADP501 4.1 30.7 1.0
O22 A:BCN506 4.1 30.2 1.0
CB A:ASP274 4.2 28.6 1.0
O A:HOH648 4.2 31.0 1.0
OE1 A:GLU181 4.3 37.4 1.0
O3A A:ADP501 4.4 28.0 1.0
CA A:GLY276 4.4 33.7 1.0
N A:GLY276 4.5 31.3 1.0
O2A A:ADP501 4.8 30.5 1.0
CA A:ASP274 4.8 28.8 1.0
O A:ASP274 4.9 31.0 1.0
PA A:ADP501 4.9 30.4 1.0
C A:ASP274 4.9 31.5 1.0
CE A:LYS162 5.0 28.1 1.0
CD A:GLU181 5.0 34.1 1.0
OE2 A:GLU181 5.0 35.4 1.0

Magnesium binding site 2 out of 2 in 7ztl

Go back to Magnesium Binding Sites List in 7ztl
Magnesium binding site 2 out of 2 in the Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Crystal Structure of A Covalently Linked Aurora-A N-Myc Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg503

b:28.2
occ:1.00
O3B A:ADP501 2.0 30.4 1.0
O2A A:ADP501 2.1 30.5 1.0
OD2 A:ASP274 2.1 29.5 1.0
O A:HOH680 2.1 28.4 1.0
OD1 A:ASN261 2.1 30.0 1.0
O A:HOH648 2.1 31.0 1.0
CG A:ASP274 3.1 30.4 1.0
CG A:ASN261 3.1 30.3 1.0
PB A:ADP501 3.1 31.8 1.0
PA A:ADP501 3.3 30.4 1.0
O3A A:ADP501 3.5 28.0 1.0
ND2 A:ASN261 3.5 28.7 1.0
O21 A:BCN506 3.6 29.9 1.0
O1B A:ADP501 3.6 30.0 1.0
CB A:ASP274 3.7 28.6 1.0
O A:HOH632 4.0 38.3 1.0
MG A:MG502 4.1 32.0 1.0
OD1 A:ASP274 4.2 30.0 1.0
O A:HOH639 4.2 40.5 1.0
O A:HOH749 4.3 50.6 1.0
O1A A:ADP501 4.3 30.3 1.0
O5' A:ADP501 4.3 30.6 1.0
O A:HOH715 4.4 30.8 1.0
C5' A:ADP501 4.5 30.5 1.0
O2B A:ADP501 4.5 30.7 1.0
CB A:ASN261 4.5 24.8 1.0
O A:GLU260 4.5 36.4 1.0
C2 A:BCN506 4.6 34.4 1.0
CA A:ASN261 4.8 29.4 1.0
O3' A:ADP501 4.9 29.9 1.0
C A:GLU260 5.0 32.8 1.0

Reference:

M.Diebold, L.Schonemann, M.Eilers, C.Sotriffer, H.Schindelin. Crystal Structure of A Covalently Linked Aurora-A-Mycn Complex Acta Crystallogr.,Sect.D V. 79 1 2023.
ISSN: ESSN 1399-0047
Page generated: Thu Oct 3 17:05:25 2024

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