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Magnesium in PDB 7zxy: 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules.

Enzymatic activity of 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules.

All present enzymatic activity of 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules.:
7.1.1.6;

Other elements in 7zxy:

The structure of 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules. also contains other interesting chemical elements:

Iron (Fe) 12 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules. (pdb code 7zxy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules., PDB code: 7zxy:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 7zxy

Go back to Magnesium Binding Sites List in 7zxy
Magnesium binding site 1 out of 2 in the 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg201

b:16.1
occ:1.00
MG B:CLA201 0.0 16.1 1.0
NB B:CLA201 2.0 16.1 1.0
ND B:CLA201 2.0 16.1 1.0
NC B:CLA201 2.1 16.1 1.0
NA B:CLA201 2.1 16.1 1.0
C4D B:CLA201 2.9 16.1 1.0
C1B B:CLA201 3.0 16.1 1.0
C4A B:CLA201 3.0 16.1 1.0
C4B B:CLA201 3.1 16.1 1.0
C1C B:CLA201 3.1 16.1 1.0
C4C B:CLA201 3.1 16.1 1.0
C1D B:CLA201 3.2 16.1 1.0
C1A B:CLA201 3.2 16.1 1.0
CHB B:CLA201 3.4 16.1 1.0
CHC B:CLA201 3.4 16.1 1.0
CHA B:CLA201 3.5 16.1 1.0
CHD B:CLA201 3.5 16.1 1.0
C3D B:CLA201 4.3 16.1 1.0
C2B B:CLA201 4.3 16.1 1.0
C3B B:CLA201 4.3 16.1 1.0
C2C B:CLA201 4.3 16.1 1.0
C2D B:CLA201 4.4 16.1 1.0
C3C B:CLA201 4.4 16.1 1.0
C3A B:CLA201 4.4 16.1 1.0
C2A B:CLA201 4.5 16.1 1.0
C11 B:PGV202 4.5 24.4 1.0
O B:GLY136 4.7 13.8 1.0
C10 B:PGV202 4.7 24.4 1.0
CG2 B:ILE104 4.7 17.9 1.0
C B:GLY136 4.9 13.8 1.0
CBD B:CLA201 4.9 16.1 1.0
CD2 B:LEU108 5.0 11.4 1.0

Magnesium binding site 2 out of 2 in 7zxy

Go back to Magnesium Binding Sites List in 7zxy
Magnesium binding site 2 out of 2 in the 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 3.15 Angstrom Cryo-Em Structure of the Dimeric Cytochrome B6F Complex From Synechocystis Sp. Pcc 6803 with Natively Bound Plastoquinone and Lipid Molecules. within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg201

b:18.4
occ:1.00
MG J:CLA201 0.0 18.4 1.0
NB J:CLA201 2.0 18.4 1.0
ND J:CLA201 2.0 18.4 1.0
NC J:CLA201 2.1 18.4 1.0
NA J:CLA201 2.1 18.4 1.0
C4D J:CLA201 2.9 18.4 1.0
C1B J:CLA201 3.0 18.4 1.0
C4A J:CLA201 3.0 18.4 1.0
C4B J:CLA201 3.1 18.4 1.0
C1C J:CLA201 3.1 18.4 1.0
C4C J:CLA201 3.1 18.4 1.0
C1A J:CLA201 3.2 18.4 1.0
C1D J:CLA201 3.2 18.4 1.0
CHB J:CLA201 3.4 18.4 1.0
CHC J:CLA201 3.4 18.4 1.0
CHA J:CLA201 3.5 18.4 1.0
CHD J:CLA201 3.5 18.4 1.0
C3D J:CLA201 4.3 18.4 1.0
C2B J:CLA201 4.3 18.4 1.0
C3B J:CLA201 4.3 18.4 1.0
C2C J:CLA201 4.3 18.4 1.0
C2D J:CLA201 4.4 18.4 1.0
C3C J:CLA201 4.4 18.4 1.0
C28 J:PGV202 4.4 31.4 1.0
C27 J:PGV202 4.4 31.4 1.0
C3A J:CLA201 4.4 18.4 1.0
C2A J:CLA201 4.5 18.4 1.0
O J:GLY136 4.7 16.1 1.0
C J:GLY136 4.9 16.1 1.0
CA J:GLY136 4.9 16.1 1.0
CBD J:CLA201 4.9 18.4 1.0
CD1 J:LEU108 5.0 13.8 1.0

Reference:

M.S.Proctor, L.A.Malone, D.A.Farmer, D.J.K.Swainsbury, F.R.Hawkings, F.Pastorelli, T.Z.Emrich-Mills, C.A.Siebert, C.N.Hunter, M.P.Johnson, A.Hitchcock. Cryo-Em Structures of the Synechocystis Sp. Pcc 6803 Cytochrome B6F Complex with and Without the Regulatory Petp Subunit. Biochem.J. V. 479 1487 2022.
ISSN: ESSN 1470-8728
PubMed: 35726684
DOI: 10.1042/BCJ20220124
Page generated: Thu Oct 3 17:06:35 2024

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