Magnesium in PDB 8a2s: Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State.

The binding sites of Magnesium atom in the Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State. (pdb code 8a2s). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State., PDB code: 8a2s:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State. within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:33.0 occ:1.00 O C:HOH565 1.9 16.5 1.0 O C:HOH519 1.9 17.9 1.0 O2 C:PO4403 1.9 31.4 1.0 O2B C:ADP401 2.0 31.6 1.0 O C:HOH520 2.2 17.3 1.0 O C:HOH506 2.2 18.3 1.0 PB C:ADP401 3.2 31.6 1.0 P C:PO4403 3.4 31.4 1.0 O3B C:ADP401 3.5 31.6 1.0 O3A C:ADP401 3.7 31.6 1.0 OE1 C:GLN137 4.0 26.6 1.0 O3 C:PO4403 4.0 31.4 1.0 O1 C:PO4403 4.2 31.4 1.0 OD2 C:ASP154 4.2 24.5 1.0 O4 C:PO4403 4.3 31.4 1.0 CA C:GLY13 4.3 31.6 1.0 CD C:GLN137 4.3 26.6 1.0 OD1 C:ASP11 4.3 33.1 1.0 OD2 C:ASP11 4.3 33.1 1.0 NZ C:LYS18 4.4 32.2 1.0 NE2 C:GLN137 4.4 26.6 1.0 O2A C:ADP401 4.5 31.6 1.0 O1B C:ADP401 4.5 31.6 1.0 CA C:GLY156 4.5 26.5 1.0 O C:HOH514 4.6 16.0 1.0 PA C:ADP401 4.6 31.6 1.0 CG C:ASP11 4.8 33.1 1.0 N C:GLY156 5.0 26.5 1.0

Magnesium binding site 2 out of 5 in the Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State. within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:33.0 occ:1.00 O A:HOH515 1.8 26.3 1.0 O A:HOH554 1.9 24.8 1.0 O2 A:PO4403 1.9 31.4 1.0 O2B A:ADP401 2.0 31.6 1.0 O A:HOH509 2.1 24.5 1.0 O A:HOH507 2.3 26.7 1.0 PB A:ADP401 3.2 31.6 1.0 P A:PO4403 3.4 31.4 1.0 O3B A:ADP401 3.5 31.6 1.0 O3A A:ADP401 3.7 31.6 1.0 OE1 A:GLN137 4.0 26.6 1.0 O3 A:PO4403 4.0 31.4 1.0 O1 A:PO4403 4.2 31.4 1.0 OD2 A:ASP154 4.2 24.5 1.0 O4 A:PO4403 4.3 31.4 1.0 CA A:GLY13 4.3 31.6 1.0 CD A:GLN137 4.3 26.6 1.0 OD1 A:ASP11 4.3 33.1 1.0 OD2 A:ASP11 4.4 33.1 1.0 NZ A:LYS18 4.4 32.2 1.0 NE2 A:GLN137 4.4 26.6 1.0 O2A A:ADP401 4.5 31.6 1.0 CA A:GLY156 4.5 26.5 1.0 O1B A:ADP401 4.5 31.6 1.0 PA A:ADP401 4.6 31.6 1.0 O A:HOH510 4.7 20.8 1.0 CG A:ASP11 4.8 33.1 1.0 N A:GLY156 5.0 26.5 1.0

Magnesium binding site 3 out of 5 in the Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State. within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:33.0 occ:1.00 O B:HOH526 1.9 19.8 1.0 O B:HOH564 1.9 17.8 1.0 O2 B:PO4403 1.9 31.4 1.0 O2B B:ADP401 2.0 31.6 1.0 O B:HOH511 2.3 20.8 1.0 O B:HOH501 2.4 18.2 1.0 PB B:ADP401 3.2 31.6 1.0 P B:PO4403 3.4 31.4 1.0 O3B B:ADP401 3.5 31.6 1.0 O3A B:ADP401 3.7 31.6 1.0 OE1 B:GLN137 4.0 26.6 1.0 O3 B:PO4403 4.0 31.4 1.0 O1 B:PO4403 4.2 31.4 1.0 OD2 B:ASP154 4.2 24.5 1.0 O4 B:PO4403 4.3 31.4 1.0 CA B:GLY13 4.3 31.6 1.0 CD B:GLN137 4.3 26.6 1.0 OD1 B:ASP11 4.3 33.1 1.0 OD2 B:ASP11 4.3 33.1 1.0 NZ B:LYS18 4.4 32.2 1.0 NE2 B:GLN137 4.4 26.6 1.0 O2A B:ADP401 4.5 31.6 1.0 CA B:GLY156 4.5 26.5 1.0 O1B B:ADP401 4.5 31.6 1.0 PA B:ADP401 4.6 31.6 1.0 O B:HOH508 4.7 16.4 1.0 CG B:ASP11 4.8 33.1 1.0 N B:GLY156 5.0 26.5 1.0

Magnesium binding site 4 out of 5 in the Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State. within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:33.0 occ:1.00 O D:HOH559 1.8 18.1 1.0 O D:HOH527 1.9 20.6 1.0 O2 D:PO4403 1.9 31.4 1.0 O2B D:ADP401 2.0 31.6 1.0 O D:HOH511 2.1 18.9 1.0 O D:HOH509 2.2 19.0 1.0 PB D:ADP401 3.2 31.6 1.0 P D:PO4403 3.4 31.4 1.0 O3B D:ADP401 3.5 31.6 1.0 O3A D:ADP401 3.7 31.6 1.0 OE1 D:GLN137 4.0 26.6 1.0 O3 D:PO4403 4.0 31.4 1.0 O1 D:PO4403 4.2 31.4 1.0 OD2 D:ASP154 4.2 24.5 1.0 O4 D:PO4403 4.3 31.4 1.0 CA D:GLY13 4.3 31.6 1.0 CD D:GLN137 4.3 26.6 1.0 OD1 D:ASP11 4.3 33.1 1.0 OD2 D:ASP11 4.4 33.1 1.0 NZ D:LYS18 4.4 32.2 1.0 NE2 D:GLN137 4.4 26.6 1.0 O2A D:ADP401 4.5 31.6 1.0 CA D:GLY156 4.5 26.5 1.0 O1B D:ADP401 4.5 31.6 1.0 O D:HOH520 4.5 17.9 1.0 PA D:ADP401 4.6 31.6 1.0 CG D:ASP11 4.8 33.1 1.0 N D:GLY156 5.0 26.5 1.0

Magnesium binding site 5 out of 5 in the Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State.


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Cryo-Em Structure of F-Actin in the MG2+-Adp-Pi Nucleotide State. within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:33.0 occ:1.00 O E:HOH506 1.8 26.4 1.0 O2 E:PO4403 1.9 31.4 1.0 O E:HOH515 2.0 26.1 1.0 O2B E:ADP401 2.0 31.6 1.0 O E:HOH534 2.2 24.6 1.0 O E:HOH501 2.3 25.5 1.0 PB E:ADP401 3.2 31.6 1.0 P E:PO4403 3.4 31.4 1.0 O3B E:ADP401 3.5 31.6 1.0 O E:HOH541 3.7 26.6 1.0 O3A E:ADP401 3.7 31.6 1.0 OE1 E:GLN137 4.0 26.6 1.0 O3 E:PO4403 4.0 31.4 1.0 O1 E:PO4403 4.2 31.4 1.0 OD2 E:ASP154 4.2 24.5 1.0 O4 E:PO4403 4.3 31.4 1.0 CA E:GLY13 4.3 31.6 1.0 CD E:GLN137 4.3 26.6 1.0 OD1 E:ASP11 4.3 33.1 1.0 OD2 E:ASP11 4.4 33.1 1.0 NZ E:LYS18 4.4 32.2 1.0 NE2 E:GLN137 4.4 26.6 1.0 O2A E:ADP401 4.5 31.6 1.0 CA E:GLY156 4.5 26.5 1.0 O1B E:ADP401 4.5 31.6 1.0 O E:HOH509 4.5 22.6 1.0 PA E:ADP401 4.6 31.6 1.0 O E:HOH525 4.8 26.7 1.0 CG E:ASP11 4.8 33.1 1.0 N E:GLY156 5.0 26.5 1.0

W.Oosterheert, B.U.Klink, A.Belyy, S.Pospich, S.Raunser. Structural Basis of Actin Filament Assembly and Aging. Nature V. 611 374 2022.
ISSN: ESSN 1476-4687
PubMed: 36289337
DOI: 10.1038/S41586-022-05241-8