Magnesium in PDB 8a5a: Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80

The binding sites of Magnesium atom in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80 (pdb code 8a5a). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80, PDB code: 8a5a:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80 within 5.0Å range: probe atom residue distance (Å) B Occ U:Mg901 b:131.2 occ:1.00 O1B U:ATP900 2.2 119.2 1.0 O2G U:ATP900 2.2 215.2 1.0 O3B U:ATP900 2.8 101.7 1.0 PB U:ATP900 3.1 95.7 1.0 PG U:ATP900 3.1 163.4 1.0 O3G U:ATP900 3.8 134.8 1.0 O3A U:ATP900 3.9 126.7 1.0 OE2 U:GLU484 4.1 334.1 1.0 ND2 U:ASN502 4.2 168.9 1.0 O2B U:ATP900 4.3 128.3 1.0 O1G U:ATP900 4.3 160.6 1.0 CA U:GLY504 4.4 157.2 1.0 OD1 U:ASN502 4.4 146.4 1.0 O2A U:ATP900 4.4 128.4 1.0 CG U:ASN502 4.7 122.8 1.0 PA U:ATP900 4.7 152.2 1.0 CE1 U:HIS272 4.8 154.9 1.0 CD U:GLU484 5.0 303.5 1.0

Magnesium binding site 2 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80 within 5.0Å range: probe atom residue distance (Å) B Occ V:Mg501 b:109.9 occ:1.00 O2B V:ATP500 2.0 167.9 1.0 O2G V:ATP500 2.1 159.4 1.0 PB V:ATP500 3.3 114.3 1.0 PG V:ATP500 3.3 106.0 1.0 OE1 V:GLN137 3.5 171.9 1.0 O3B V:ATP500 3.7 101.9 1.0 O1G V:ATP500 3.8 190.7 1.0 O1B V:ATP500 4.1 125.7 1.0 O2A V:ATP500 4.1 107.7 1.0 NZ V:LYS18 4.2 134.1 1.0 CD V:GLN137 4.2 125.6 1.0 OD2 V:ASP11 4.4 181.6 1.0 O3G V:ATP500 4.5 181.2 1.0 O3A V:ATP500 4.5 112.0 1.0 NE2 V:GLN137 4.6 163.3 1.0 OD1 V:ASP154 4.8 288.7 1.0 PA V:ATP500 4.8 108.6 1.0 CA V:GLY13 4.9 137.8 1.0 OD1 V:ASP11 4.9 157.2 1.0 O V:ASN12 5.0 161.2 1.0

Magnesium binding site 3 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of INO80 within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg501 b:128.3 occ:1.00 O2G W:ATP500 1.8 131.2 1.0 O1B W:ATP500 1.9 87.5 1.0 PB W:ATP500 3.1 98.8 1.0 PG W:ATP500 3.1 127.9 1.0 O3B W:ATP500 3.5 91.2 1.0 O1G W:ATP500 3.7 100.0 1.0 O2B W:ATP500 4.1 104.3 1.0 O1A W:ATP500 4.2 150.9 1.0 O3A W:ATP500 4.2 98.0 1.0 OD1 W:ASP159 4.3 311.9 1.0 O3G W:ATP500 4.3 92.0 1.0 PA W:ATP500 4.5 127.2 1.0 O2A W:ATP500 4.6 75.7 1.0 OD2 W:ASP159 4.9 279.0 1.0 CA W:GLY161 5.0 130.2 1.0 CG W:ASP159 5.0 255.3 1.0

F.Kunert, F.J.Metzner, J.Jung, M.Hopfler, S.Woike, K.Schall, D.Kostrewa, M.Moldt, J.X.Chen, S.Bantele, B.Pfander, S.Eustermann, K.P.Hopfner. Structural Mechanism of Extranucleosomal Dna Readout By the INO80 Complex. Sci Adv V. 8 D3189 2022.
ISSN: ESSN 2375-2548
PubMed: 36490333
DOI: 10.1126/SCIADV.ADD3189