Magnesium in PDB 8a5d: Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80

The binding sites of Magnesium atom in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 (pdb code 8a5d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80, PDB code: 8a5d:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 within 5.0Å range: probe atom residue distance (Å) B Occ U:Mg901 b:98.8 occ:1.00 O3G U:AGS900 2.0 109.7 1.0 O1B U:AGS900 2.4 62.0 1.0 PG U:AGS900 3.2 86.6 1.0 O2G U:AGS900 3.5 105.3 1.0 PB U:AGS900 3.7 59.3 1.0 O3B U:AGS900 3.8 75.6 1.0 O2A U:AGS900 3.8 48.0 1.0 OE2 U:GLU336 3.9 136.2 1.0 OD1 U:ASP353 4.1 122.3 1.0 NE2 U:HIS110 4.2 72.7 1.0 CE1 U:HIS110 4.3 66.2 1.0 OD2 U:ASP353 4.3 120.0 1.0 O3A U:AGS900 4.5 67.0 1.0 CG U:ASP353 4.6 101.7 1.0 PA U:AGS900 4.7 57.5 1.0 S1G U:AGS900 4.7 77.9 1.0 CD U:GLU336 4.7 135.8 1.0 NH1 U:ARG117 4.8 66.4 1.0 O2B U:AGS900 4.9 46.9 1.0 NZ U:LYS358 4.9 122.1 1.0

Magnesium binding site 2 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 within 5.0Å range: probe atom residue distance (Å) B Occ V:Mg501 b:59.0 occ:1.00 O2G V:AGS500 2.0 73.0 1.0 O1B V:AGS500 2.2 57.5 1.0 PG V:AGS500 3.2 58.8 1.0 PB V:AGS500 3.3 51.1 1.0 O3B V:AGS500 3.4 67.6 1.0 O3G V:AGS500 3.6 100.9 1.0 O2A V:AGS500 3.9 52.9 1.0 NZ V:LYS18 4.4 50.8 1.0 OE1 V:GLN137 4.4 74.8 1.0 O2B V:AGS500 4.4 80.6 1.0 O3A V:AGS500 4.4 65.2 1.0 PA V:AGS500 4.6 65.4 1.0 OD2 V:ASP11 4.7 122.2 1.0 S1G V:AGS500 4.8 96.7 1.0 CD V:GLN137 4.8 85.8 1.0 CA V:GLY13 4.9 48.7 1.0 OD2 V:ASP154 5.0 167.5 1.0 NE2 V:GLN137 5.0 91.6 1.0

Magnesium binding site 3 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg501 b:74.3 occ:1.00 O2G W:AGS500 2.0 88.6 1.0 O1B W:AGS500 2.2 78.0 1.0 PG W:AGS500 3.2 72.5 1.0 PB W:AGS500 3.4 66.7 1.0 O3B W:AGS500 3.6 86.8 1.0 O3G W:AGS500 3.7 108.5 1.0 O2A W:AGS500 4.1 73.2 1.0 O3A W:AGS500 4.1 57.9 1.0 OD1 W:ASP197 4.4 134.3 1.0 O2B W:AGS500 4.5 54.2 1.0 PA W:AGS500 4.6 62.8 1.0 NH2 W:ARG34 4.6 99.0 1.0 CA W:GLY199 4.7 84.0 1.0 S1G W:AGS500 4.8 135.5 1.0 CG2 W:THR180 4.9 140.2 1.0 OD2 W:ASP197 4.9 155.5 1.0 NH1 W:ARG34 5.0 62.9 1.0

F.Kunert, F.J.Metzner, J.Jung, M.Hopfler, S.Woike, K.Schall, D.Kostrewa, M.Moldt, J.X.Chen, S.Bantele, B.Pfander, S.Eustermann, K.P.Hopfner. Structural Mechanism of Extranucleosomal Dna Readout By the INO80 Complex. Sci Adv V. 8 D3189 2022.
ISSN: ESSN 2375-2548
PubMed: 36490333
DOI: 10.1126/SCIADV.ADD3189