Atomistry » Magnesium » PDB 8a0m-8a6v » 8a5d
Atomistry »
  Magnesium »
    PDB 8a0m-8a6v »
      8a5d »

Magnesium in PDB 8a5d: Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 (pdb code 8a5d). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80, PDB code: 8a5d:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8a5d

Go back to Magnesium Binding Sites List in 8a5d
Magnesium binding site 1 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 within 5.0Å range:
probe atom residue distance (Å) B Occ
U:Mg901

b:98.8
occ:1.00
O3G U:AGS900 2.0 109.7 1.0
O1B U:AGS900 2.4 62.0 1.0
PG U:AGS900 3.2 86.6 1.0
O2G U:AGS900 3.5 105.3 1.0
PB U:AGS900 3.7 59.3 1.0
O3B U:AGS900 3.8 75.6 1.0
O2A U:AGS900 3.8 48.0 1.0
OE2 U:GLU336 3.9 136.2 1.0
OD1 U:ASP353 4.1 122.3 1.0
NE2 U:HIS110 4.2 72.7 1.0
CE1 U:HIS110 4.3 66.2 1.0
OD2 U:ASP353 4.3 120.0 1.0
O3A U:AGS900 4.5 67.0 1.0
CG U:ASP353 4.6 101.7 1.0
PA U:AGS900 4.7 57.5 1.0
S1G U:AGS900 4.7 77.9 1.0
CD U:GLU336 4.7 135.8 1.0
NH1 U:ARG117 4.8 66.4 1.0
O2B U:AGS900 4.9 46.9 1.0
NZ U:LYS358 4.9 122.1 1.0

Magnesium binding site 2 out of 3 in 8a5d

Go back to Magnesium Binding Sites List in 8a5d
Magnesium binding site 2 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 within 5.0Å range:
probe atom residue distance (Å) B Occ
V:Mg501

b:59.0
occ:1.00
O2G V:AGS500 2.0 73.0 1.0
O1B V:AGS500 2.2 57.5 1.0
PG V:AGS500 3.2 58.8 1.0
PB V:AGS500 3.3 51.1 1.0
O3B V:AGS500 3.4 67.6 1.0
O3G V:AGS500 3.6 100.9 1.0
O2A V:AGS500 3.9 52.9 1.0
NZ V:LYS18 4.4 50.8 1.0
OE1 V:GLN137 4.4 74.8 1.0
O2B V:AGS500 4.4 80.6 1.0
O3A V:AGS500 4.4 65.2 1.0
PA V:AGS500 4.6 65.4 1.0
OD2 V:ASP11 4.7 122.2 1.0
S1G V:AGS500 4.8 96.7 1.0
CD V:GLN137 4.8 85.8 1.0
CA V:GLY13 4.9 48.7 1.0
OD2 V:ASP154 5.0 167.5 1.0
NE2 V:GLN137 5.0 91.6 1.0

Magnesium binding site 3 out of 3 in 8a5d

Go back to Magnesium Binding Sites List in 8a5d
Magnesium binding site 3 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 within 5.0Å range:
probe atom residue distance (Å) B Occ
W:Mg501

b:74.3
occ:1.00
O2G W:AGS500 2.0 88.6 1.0
O1B W:AGS500 2.2 78.0 1.0
PG W:AGS500 3.2 72.5 1.0
PB W:AGS500 3.4 66.7 1.0
O3B W:AGS500 3.6 86.8 1.0
O3G W:AGS500 3.7 108.5 1.0
O2A W:AGS500 4.1 73.2 1.0
O3A W:AGS500 4.1 57.9 1.0
OD1 W:ASP197 4.4 134.3 1.0
O2B W:AGS500 4.5 54.2 1.0
PA W:AGS500 4.6 62.8 1.0
NH2 W:ARG34 4.6 99.0 1.0
CA W:GLY199 4.7 84.0 1.0
S1G W:AGS500 4.8 135.5 1.0
CG2 W:THR180 4.9 140.2 1.0
OD2 W:ASP197 4.9 155.5 1.0
NH1 W:ARG34 5.0 62.9 1.0

Reference:

F.Kunert, F.J.Metzner, J.Jung, M.Hopfler, S.Woike, K.Schall, D.Kostrewa, M.Moldt, J.X.Chen, S.Bantele, B.Pfander, S.Eustermann, K.P.Hopfner. Structural Mechanism of Extranucleosomal Dna Readout By the INO80 Complex. Sci Adv V. 8 D3189 2022.
ISSN: ESSN 2375-2548
PubMed: 36490333
DOI: 10.1126/SCIADV.ADD3189
Page generated: Thu Oct 3 17:15:01 2024

Last articles

Sr in 3BNQ
Sr in 2X53
Sr in 2SPT
Sr in 2QJY
Sr in 2XRM
Sr in 2WOH
Sr in 2RIO
Sr in 2PN4
Sr in 2QJP
Sr in 2HMP
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy