Magnesium in PDB 8a5o: Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80

The binding sites of Magnesium atom in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80 (pdb code 8a5o). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80, PDB code: 8a5o:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80 within 5.0Å range: probe atom residue distance (Å) B Occ U:Mg901 b:78.6 occ:1.00 O2B U:AGS900 2.2 74.4 1.0 O3G U:AGS900 2.3 75.5 1.0 PB U:AGS900 3.3 45.2 1.0 OE2 U:GLU484 3.3 191.3 1.0 PG U:AGS900 3.4 65.9 1.0 OD1 U:ASN502 3.5 107.3 1.0 O1B U:AGS900 3.7 86.8 1.0 O3B U:AGS900 3.7 73.5 1.0 S1G U:AGS900 4.1 143.5 1.0 CG U:ASN502 4.4 62.9 1.0 CD U:GLU484 4.5 164.0 1.0 CE1 U:HIS272 4.7 64.0 1.0 O3A U:AGS900 4.7 58.2 1.0 ND2 U:ASN502 4.7 67.7 1.0 NE2 U:HIS272 4.7 53.3 1.0 O2G U:AGS900 4.7 101.5 1.0 O2A U:AGS900 4.8 73.8 1.0 CA U:GLY504 4.8 80.8 1.0 NZ U:LYS279 5.0 85.6 1.0

Magnesium binding site 2 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80 within 5.0Å range: probe atom residue distance (Å) B Occ V:Mg501 b:62.0 occ:1.00 O2G V:AGS500 2.1 85.1 1.0 O2B V:AGS500 2.4 70.8 1.0 PG V:AGS500 3.2 59.6 1.0 O3B V:AGS500 3.4 60.4 1.0 PB V:AGS500 3.4 49.4 1.0 O3G V:AGS500 3.5 101.4 1.0 OE1 V:GLN137 3.9 100.6 1.0 O2A V:AGS500 3.9 50.6 1.0 O1B V:AGS500 4.3 64.4 1.0 OD2 V:ASP11 4.4 122.6 1.0 NZ V:LYS18 4.4 69.4 1.0 CD V:GLN137 4.5 85.9 1.0 O3A V:AGS500 4.6 57.4 1.0 PA V:AGS500 4.8 63.5 1.0 NE2 V:GLN137 4.8 96.4 1.0 S1G V:AGS500 4.9 134.2 1.0 O V:ASN12 4.9 110.9 1.0

Magnesium binding site 3 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of S. Cerevisiae INO80 within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg501 b:65.1 occ:1.00 O2G W:AGS500 2.0 82.1 1.0 O1B W:AGS500 2.3 59.9 1.0 PG W:AGS500 3.2 73.7 1.0 PB W:AGS500 3.4 39.5 1.0 O3B W:AGS500 3.6 40.5 1.0 O3G W:AGS500 4.0 73.7 1.0 O1A W:AGS500 4.2 110.3 1.0 OD1 W:ASP159 4.2 206.5 1.0 O3A W:AGS500 4.3 74.7 1.0 OD2 W:ASP159 4.5 186.9 1.0 O2B W:AGS500 4.5 49.7 1.0 PA W:AGS500 4.6 61.3 1.0 S1G W:AGS500 4.7 83.6 1.0 CG W:ASP159 4.7 176.1 1.0 O2A W:AGS500 4.8 41.2 1.0

F.Kunert, F.J.Metzner, J.Jung, M.Hopfler, S.Woike, K.Schall, D.Kostrewa, M.Moldt, J.X.Chen, S.Bantele, B.Pfander, S.Eustermann, K.P.Hopfner. Structural Mechanism of Extranucleosomal Dna Readout By the INO80 Complex. Sci Adv V. 8 D3189 2022.
ISSN: ESSN 2375-2548
PubMed: 36490333
DOI: 10.1126/SCIADV.ADD3189