Magnesium in PDB 8a5p: Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna

The binding sites of Magnesium atom in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna (pdb code 8a5p). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna, PDB code: 8a5p:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna within 5.0Å range: probe atom residue distance (Å) B Occ U:Mg901 b:94.4 occ:1.00 O1B U:ATP900 2.0 77.6 1.0 O2G U:ATP900 2.3 141.3 1.0 PB U:ATP900 3.2 62.3 1.0 OE2 U:GLU336 3.3 268.6 1.0 O3B U:ATP900 3.5 87.3 1.0 PG U:ATP900 3.5 86.9 1.0 O2B U:ATP900 4.0 75.1 1.0 O2A U:ATP900 4.0 69.2 1.0 NE2 U:HIS110 4.1 111.6 1.0 CE1 U:HIS110 4.2 86.3 1.0 OD2 U:ASP353 4.2 256.3 1.0 O3G U:ATP900 4.2 114.7 1.0 OD1 U:ASP353 4.4 188.7 1.0 CD U:GLU336 4.5 257.6 1.0 O3A U:ATP900 4.5 73.3 1.0 NH1 U:ARG117 4.5 126.7 1.0 O U:PRO111 4.6 141.5 1.0 O1G U:ATP900 4.6 86.4 1.0 CG U:ASP353 4.7 211.3 1.0 PA U:ATP900 4.8 116.9 1.0 CA U:GLY355 4.9 124.4 1.0 OE1 U:GLU336 4.9 314.3 1.0 NZ U:LYS358 5.0 181.2 1.0

Magnesium binding site 2 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna within 5.0Å range: probe atom residue distance (Å) B Occ V:Mg501 b:65.8 occ:1.00 O2B V:ATP500 1.9 112.3 1.0 O2G V:ATP500 2.0 143.7 1.0 PG V:ATP500 3.1 81.5 1.0 PB V:ATP500 3.2 61.5 1.0 O1G V:ATP500 3.5 91.0 1.0 O3B V:ATP500 3.6 73.4 1.0 O2A V:ATP500 3.9 79.9 1.0 OE1 V:GLN137 4.2 141.2 1.0 O3A V:ATP500 4.2 54.3 1.0 O1B V:ATP500 4.2 76.5 1.0 OD2 V:ASP11 4.3 114.5 1.0 NZ V:LYS18 4.4 147.4 1.0 CD V:GLN137 4.5 114.1 1.0 O3G V:ATP500 4.5 137.1 1.0 PA V:ATP500 4.5 79.0 1.0 NE2 V:GLN137 4.5 117.3 1.0 CA V:GLY13 4.5 99.1 1.0 OD2 V:ASP154 4.7 201.1 1.0 OD1 V:ASP11 4.8 110.0 1.0 CG V:ASP11 5.0 125.1 1.0 CA V:GLY156 5.0 105.8 1.0 O1A V:ATP500 5.0 85.3 1.0

Magnesium binding site 3 out of 3 in the Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of ARP4-IES4-N-Actin-ARP8-INO80HSA Subcomplex (A-Module) of Chaetomium Thermophilum INO80 on Curved Dna within 5.0Å range: probe atom residue distance (Å) B Occ W:Mg501 b:81.9 occ:1.00 O1B W:ATP500 1.8 86.3 1.0 O2G W:ATP500 1.9 134.8 1.0 PB W:ATP500 3.2 68.8 1.0 PG W:ATP500 3.2 91.5 1.0 O3B W:ATP500 3.6 64.4 1.0 O3A W:ATP500 3.7 87.6 1.0 O1G W:ATP500 3.9 92.9 1.0 O1A W:ATP500 4.1 75.5 1.0 NH2 W:ARG34 4.2 136.5 1.0 O3G W:ATP500 4.4 91.2 1.0 O2B W:ATP500 4.4 56.7 1.0 NH1 W:ARG34 4.5 107.7 1.0 PA W:ATP500 4.5 84.2 1.0 CA W:GLY29 4.8 128.5 1.0 CZ W:ARG34 4.8 91.8 1.0 OD1 W:ASP197 4.9 253.1 1.0

F.Kunert, F.J.Metzner, J.Jung, M.Hopfler, S.Woike, K.Schall, D.Kostrewa, M.Moldt, J.X.Chen, S.Bantele, B.Pfander, S.Eustermann, K.P.Hopfner. Structural Mechanism of Extranucleosomal Dna Readout By the INO80 Complex. Sci Adv V. 8 D3189 2022.
ISSN: ESSN 2375-2548
PubMed: 36490333
DOI: 10.1126/SCIADV.ADD3189