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Magnesium in PDB 8a9c: Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp

Enzymatic activity of Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp

All present enzymatic activity of Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp:
2.2.1.7;

Protein crystallography data

The structure of Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp, PDB code: 8a9c was solved by S.Adam, A.Hirsch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.37 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 89.673, 72.559, 91.438, 90, 108.46, 90
R / Rfree (%) 15.4 / 19.1

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp (pdb code 8a9c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp, PDB code: 8a9c:

Magnesium binding site 1 out of 1 in 8a9c

Go back to Magnesium Binding Sites List in 8a9c
Magnesium binding site 1 out of 1 in the Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg602

b:74.8
occ:1.00
 O3A B:TPP601 2.2 82.3 1.0
PB B:TPP601 2.7 112.8 1.0
O1A B:TPP601 2.8 95.0 1.0
O2B B:TPP601 2.8 76.6 1.0
O3B B:TPP601 2.9 84.7 1.0
OD1 B:ASP152 3.0 61.7 1.0
OD1 B:ASN181 3.0 64.6 1.0
PA B:TPP601 3.1 110.2 1.0
ND2 B:ASN181 3.2 60.3 1.0
CG B:ASN181 3.3 70.3 1.0
O B:ASN179 3.4 36.9 1.0
N B:ASP152 3.6 35.3 1.0
CA B:GLY151 3.7 31.6 1.0
O7 B:TPP601 4.1 96.9 1.0
C B:GLY151 4.1 35.5 1.0
CG B:ASP152 4.1 53.1 1.0
H71 B:TPP601 4.1 94.3 1.0
O1B B:TPP601 4.2 74.8 1.0
O2A B:TPP601 4.2 97.8 1.0
N B:ASN181 4.4 57.5 1.0
C B:ASN179 4.6 45.8 1.0
N B:GLY153 4.6 32.3 1.0
CB B:ASN181 4.7 65.3 1.0
C7 B:TPP601 4.7 78.6 1.0
CA B:ASP152 4.7 32.3 1.0
CB B:ASP152 4.8 48.6 1.0
ND2 B:ASN179 5.0 43.5 1.0

Reference:

S.Adam, A.Hirsch. Structure of Truncated 1-Deoxy-D-Xylulose 5-Phosphate Synthase (Dxs) From Klebsiella Pneumoniae in Complex with Cofactor Tpp To Be Published.
Page generated: Thu Jul 27 22:18:39 2023

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