Magnesium in PDB 8aa0: Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12

The binding sites of Magnesium atom in the Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12 (pdb code 8aa0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12, PDB code: 8aa0:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:26.2 occ:1.00 OD1 B:ASN401 2.0 59.1 1.0 ND2 A:ASN664 2.1 73.5 1.0 O B:TYR273 2.2 57.8 1.0 OE1 B:GLU262 2.3 73.1 1.0 OE2 B:GLU262 2.6 73.2 1.0 CD B:GLU262 2.8 74.6 1.0 O B:SER399 2.8 51.9 1.0 CG A:ASN664 3.1 79.1 1.0 CG B:ASN401 3.1 56.6 1.0 C B:TYR273 3.4 50.2 1.0 OD1 A:ASN664 3.5 85.4 1.0 ND2 B:ASN401 3.6 61.7 1.0 N B:TYR273 3.7 39.1 1.0 C B:SER399 4.1 50.3 1.0 CA B:TYR273 4.1 32.4 1.0 N B:ASN401 4.1 48.0 1.0 CG B:GLU262 4.2 69.6 1.0 CB A:ASN664 4.2 76.0 1.0 CA A:ASN664 4.3 77.0 1.0 CB B:ASN401 4.3 45.5 1.0 N B:SER274 4.4 45.3 1.0 OE1 B:GLN272 4.5 61.0 1.0 CA B:ASN401 4.5 43.6 1.0 N A:ASN664 4.6 79.3 1.0 CB B:TYR273 4.6 40.9 1.0 CA B:SER274 4.7 43.2 1.0 C B:LEU400 4.7 56.5 1.0 CB B:SER399 4.7 56.3 1.0 C B:GLN272 4.7 50.3 1.0 CA B:GLN272 4.9 43.8 1.0 CB B:GLU262 4.9 64.5 1.0 CA B:SER399 4.9 44.9 1.0 CA B:LEU400 4.9 49.9 1.0 N B:LEU400 5.0 53.7 1.0

Magnesium binding site 2 out of 4 in the Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:79.4 occ:1.00 OD2 A:ASP848 2.1 87.5 1.0 OD1 A:ASN841 2.1 89.1 1.0 OD1 A:ASP839 2.2 94.2 1.0 OD1 A:ASP848 2.4 94.3 1.0 O A:VAL843 2.5 88.0 1.0 ND2 A:ASN841 2.5 83.2 1.0 CG A:ASP848 2.5 87.7 1.0 CG A:ASN841 2.6 86.8 1.0 OD1 A:ASP837 2.6 83.6 1.0 CG A:ASP839 3.0 91.3 1.0 OD2 A:ASP839 3.2 89.8 1.0 OD1 A:ASP845 3.5 95.0 1.0 CG A:ASP837 3.5 85.1 1.0 C A:VAL843 3.7 83.8 1.0 OD2 A:ASP837 3.9 90.3 1.0 CB A:ASP848 4.0 83.5 1.0 CB A:ASN841 4.0 82.7 1.0 N A:ASN841 4.3 83.9 1.0 CA A:ILE844 4.4 77.6 1.0 CB A:ASP839 4.4 87.8 1.0 N A:VAL843 4.5 84.1 1.0 N A:ASP839 4.5 85.1 1.0 N A:ILE844 4.5 76.7 1.0 CG A:ASP845 4.5 92.5 1.0 N A:ASP845 4.6 87.7 1.0 CA A:ASN841 4.7 81.3 1.0 CA A:VAL843 4.7 84.6 1.0 CB A:ASP837 4.8 82.8 1.0 CG1 A:VAL843 4.8 84.7 1.0 CA A:ASP848 4.8 84.4 1.0 CA A:ASP837 4.8 83.6 1.0 N A:HIS840 4.8 86.5 1.0 N A:ILE838 4.9 87.8 1.0 CA A:ASP839 4.9 86.2 1.0 N A:ASP848 4.9 86.7 1.0 CD1 A:ILE844 4.9 80.0 1.0 C A:ILE844 5.0 81.8 1.0 OD2 A:ASP845 5.0 94.4 1.0

Magnesium binding site 3 out of 4 in the Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12 within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg601 b:26.2 occ:1.00 OD1 J:ASN401 2.0 59.1 1.0 ND2 I:ASN664 2.1 73.5 1.0 O J:TYR273 2.2 57.8 1.0 OE1 J:GLU262 2.3 73.1 1.0 OE2 J:GLU262 2.6 73.2 1.0 CD J:GLU262 2.8 74.6 1.0 O J:SER399 2.8 51.9 1.0 CG I:ASN664 3.0 79.1 1.0 CG J:ASN401 3.1 56.6 1.0 C J:TYR273 3.4 50.2 1.0 OD1 I:ASN664 3.5 85.4 1.0 ND2 J:ASN401 3.6 61.7 1.0 N J:TYR273 3.7 39.1 1.0 CA I:ASN664 4.0 77.0 1.0 C J:SER399 4.1 50.3 1.0 CB I:ASN664 4.1 76.0 1.0 CA J:TYR273 4.1 32.4 1.0 N J:ASN401 4.1 48.0 1.0 CG J:GLU262 4.2 69.6 1.0 N I:ASN664 4.2 79.3 1.0 CB J:ASN401 4.3 45.5 1.0 N J:SER274 4.4 45.3 1.0 OE1 J:GLN272 4.5 61.0 1.0 CA J:ASN401 4.5 43.6 1.0 CB J:TYR273 4.6 40.9 1.0 CA J:SER274 4.7 43.2 1.0 C J:LEU400 4.7 56.5 1.0 CB J:SER399 4.7 56.3 1.0 C J:GLN272 4.7 50.3 1.0 CA J:GLN272 4.9 43.8 1.0 CB J:GLU262 4.9 64.5 1.0 CA J:SER399 4.9 44.9 1.0 CA J:LEU400 4.9 49.9 1.0 N J:LEU400 5.0 53.7 1.0 OD2 I:ASP659 5.0 84.0 1.0

Magnesium binding site 4 out of 4 in the Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Levan Utilisation Machinery (Utilisome) with Levan Fructo- Oligosaccharides Dp 8-12 within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1101 b:79.4 occ:1.00 OD2 I:ASP848 2.1 87.5 1.0 OD1 I:ASN841 2.1 89.1 1.0 OD1 I:ASP839 2.2 94.2 1.0 OD1 I:ASP848 2.4 94.3 1.0 O I:VAL843 2.5 88.0 1.0 ND2 I:ASN841 2.5 83.2 1.0 CG I:ASP848 2.5 87.7 1.0 CG I:ASN841 2.6 86.8 1.0 OD1 I:ASP837 2.6 83.6 1.0 CG I:ASP839 3.0 91.3 1.0 OD2 I:ASP839 3.2 89.8 1.0 OD1 I:ASP845 3.5 95.0 1.0 CG I:ASP837 3.5 85.1 1.0 C I:VAL843 3.7 83.8 1.0 OD2 I:ASP837 3.9 90.3 1.0 CB I:ASP848 4.0 83.5 1.0 CB I:ASN841 4.0 82.7 1.0 N I:ASN841 4.3 83.9 1.0 CA I:ILE844 4.4 77.6 1.0 CB I:ASP839 4.4 87.8 1.0 N I:VAL843 4.5 84.1 1.0 N I:ASP839 4.5 85.1 1.0 N I:ILE844 4.5 76.7 1.0 CG I:ASP845 4.5 92.5 1.0 N I:ASP845 4.6 87.7 1.0 CA I:ASN841 4.7 81.3 1.0 CA I:VAL843 4.7 84.6 1.0 CB I:ASP837 4.8 82.8 1.0 CG1 I:VAL843 4.8 84.7 1.0 CA I:ASP848 4.8 84.4 1.0 CA I:ASP837 4.8 83.6 1.0 N I:HIS840 4.8 86.5 1.0 N I:ILE838 4.9 87.8 1.0 CA I:ASP839 4.9 86.2 1.0 N I:ASP848 4.9 86.7 1.0 CD1 I:ILE844 4.9 80.0 1.0 C I:ILE844 5.0 81.8 1.0 OD2 I:ASP845 5.0 94.4 1.0

J.B.R.White, A.Silale, M.Feasy, T.Heunis, Y.Zhu, H.Zheng, A.Gajbhiye, S.Firbank, A.Basle, M.Trost, D.N.Bolam, B.Van Den Berg, N.A.Ranson. Outer Membrane Utilisomes Mediate Glycan Uptake in Gut Bacteroidetes Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06146-W