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Magnesium in PDB 8aa1: Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12 (pdb code 8aa1). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12, PDB code: 8aa1:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8aa1

Go back to Magnesium Binding Sites List in 8aa1
Magnesium binding site 1 out of 4 in the Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:15.8
occ:1.00
 OD1 B:ASN401 2.1 53.8 1.0
ND2 A:ASN664 2.1 60.5 1.0
O B:TYR273 2.1 47.5 1.0
OE1 B:GLU262 2.5 61.0 1.0
O B:SER399 2.6 46.1 1.0
CG B:ASN401 3.2 48.7 1.0
CD B:GLU262 3.2 64.5 1.0
CG A:ASN664 3.2 67.6 1.0
OE2 B:GLU262 3.3 73.4 1.0
C B:TYR273 3.3 46.8 1.0
N B:TYR273 3.6 35.0 1.0
ND2 B:ASN401 3.8 47.4 1.0
OD1 A:ASN664 3.8 77.2 1.0
C B:SER399 3.8 42.6 1.0
CA B:TYR273 3.9 32.6 1.0
N B:ASN401 4.2 30.1 1.0
CB A:ASN664 4.3 58.8 1.0
CB B:TYR273 4.3 32.5 1.0
CA A:ASN664 4.3 59.1 1.0
N B:SER274 4.4 36.0 1.0
CB B:SER399 4.4 41.8 1.0
CB B:ASN401 4.4 38.5 1.0
C B:GLN272 4.5 48.5 1.0
CA B:ASN401 4.6 27.6 1.0
C B:LEU400 4.6 39.4 1.0
CG B:GLU262 4.6 57.3 1.0
OE1 B:GLN272 4.6 50.8 1.0
CA B:SER399 4.6 37.1 1.0
CA B:SER274 4.7 36.5 1.0
N A:ASN664 4.7 61.4 1.0
CA B:GLN272 4.8 45.2 1.0
N B:LEU400 4.8 39.7 1.0
OG B:SER399 4.8 55.6 1.0
CA B:LEU400 4.8 36.4 1.0

Magnesium binding site 2 out of 4 in 8aa1

Go back to Magnesium Binding Sites List in 8aa1
Magnesium binding site 2 out of 4 in the Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1101

b:63.9
occ:1.00
 OD1 A:ASN841 2.1 75.6 1.0
OD2 A:ASP848 2.1 76.3 1.0
OD1 A:ASP839 2.3 83.1 1.0
O A:VAL843 2.4 72.9 1.0
OD1 A:ASP837 2.5 72.5 1.0
OD1 A:ASP848 2.7 75.4 1.0
CG A:ASP848 2.7 72.7 1.0
CG A:ASN841 2.8 77.0 1.0
ND2 A:ASN841 2.9 76.1 1.0
CG A:ASP839 3.2 77.4 1.0
OD2 A:ASP839 3.4 73.9 1.0
OD1 A:ASP845 3.4 82.4 1.0
CG A:ASP837 3.5 75.9 1.0
C A:VAL843 3.6 71.6 1.0
OD2 A:ASP837 3.9 82.1 1.0
CB A:ASP848 4.1 69.4 1.0
CB A:ASN841 4.2 73.4 1.0
N A:ASN841 4.3 75.0 1.0
CA A:ILE844 4.4 67.1 1.0
N A:VAL843 4.4 71.8 1.0
N A:ILE844 4.4 66.7 1.0
CG A:ASP845 4.5 82.8 1.0
N A:ASP839 4.5 76.6 1.0
CB A:ASP839 4.6 74.6 1.0
N A:ASP845 4.6 74.5 1.0
CA A:VAL843 4.6 73.9 1.0
CB A:ASP837 4.7 73.0 1.0
CA A:ASP837 4.7 69.8 1.0
N A:HIS840 4.7 77.8 1.0
CA A:ASN841 4.7 73.6 1.0
N A:ILE838 4.8 72.5 1.0
CG1 A:VAL843 4.8 73.6 1.0
CD1 A:ILE844 4.8 69.9 1.0
OD2 A:ASP845 4.9 83.7 1.0
CA A:ASP848 4.9 69.3 1.0
CA A:ASP839 4.9 76.0 1.0
C A:ILE844 5.0 69.5 1.0
N A:GLY842 5.0 67.7 1.0
C A:ASP837 5.0 75.8 1.0
N A:ASP848 5.0 72.2 1.0

Magnesium binding site 3 out of 4 in 8aa1

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Magnesium binding site 3 out of 4 in the Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg601

b:15.8
occ:1.00
 OD1 J:ASN401 2.1 53.8 1.0
ND2 I:ASN664 2.1 60.5 1.0
O J:TYR273 2.1 47.5 1.0
OE1 J:GLU262 2.5 61.0 1.0
O J:SER399 2.6 46.1 1.0
CG J:ASN401 3.2 48.7 1.0
CD J:GLU262 3.2 64.5 1.0
CG I:ASN664 3.2 67.6 1.0
OE2 J:GLU262 3.3 73.4 1.0
C J:TYR273 3.3 46.8 1.0
N J:TYR273 3.6 35.0 1.0
ND2 J:ASN401 3.8 47.4 1.0
OD1 I:ASN664 3.8 77.2 1.0
C J:SER399 3.8 42.6 1.0
CA J:TYR273 3.9 32.6 1.0
N J:ASN401 4.2 30.1 1.0
CB I:ASN664 4.3 58.8 1.0
CB J:TYR273 4.3 32.5 1.0
CA I:ASN664 4.3 59.1 1.0
N J:SER274 4.4 36.0 1.0
CB J:SER399 4.4 41.8 1.0
CB J:ASN401 4.4 38.5 1.0
C J:GLN272 4.5 48.5 1.0
CA J:ASN401 4.6 27.6 1.0
C J:LEU400 4.6 39.4 1.0
CG J:GLU262 4.6 57.3 1.0
OE1 J:GLN272 4.6 50.8 1.0
CA J:SER399 4.6 37.1 1.0
CA J:SER274 4.7 36.5 1.0
N I:ASN664 4.7 61.4 1.0
CA J:GLN272 4.8 45.2 1.0
N J:LEU400 4.8 39.7 1.0
OG J:SER399 4.8 55.6 1.0
CA J:LEU400 4.8 36.4 1.0

Magnesium binding site 4 out of 4 in 8aa1

Go back to Magnesium Binding Sites List in 8aa1
Magnesium binding site 4 out of 4 in the Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Core Suscd Transporter Units From the Levan Utilisome with Levan Fructo-Oligosaccharides Dp 8-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg1101

b:63.9
occ:1.00
 OD1 I:ASN841 2.1 75.6 1.0
OD2 I:ASP848 2.1 76.3 1.0
OD1 I:ASP839 2.3 83.1 1.0
O I:VAL843 2.4 72.9 1.0
OD1 I:ASP837 2.5 72.5 1.0
OD1 I:ASP848 2.7 75.4 1.0
CG I:ASP848 2.7 72.7 1.0
CG I:ASN841 2.8 77.0 1.0
ND2 I:ASN841 2.9 76.1 1.0
CG I:ASP839 3.2 77.4 1.0
OD2 I:ASP839 3.4 73.9 1.0
OD1 I:ASP845 3.4 82.4 1.0
CG I:ASP837 3.5 75.9 1.0
C I:VAL843 3.6 71.6 1.0
OD2 I:ASP837 3.9 82.1 1.0
CB I:ASP848 4.1 69.4 1.0
CB I:ASN841 4.2 73.4 1.0
N I:ASN841 4.3 75.0 1.0
CA I:ILE844 4.4 67.1 1.0
N I:VAL843 4.4 71.8 1.0
N I:ILE844 4.4 66.7 1.0
CG I:ASP845 4.5 82.8 1.0
N I:ASP839 4.5 76.6 1.0
CB I:ASP839 4.6 74.6 1.0
N I:ASP845 4.6 74.5 1.0
CA I:VAL843 4.6 73.9 1.0
CB I:ASP837 4.7 73.0 1.0
CA I:ASP837 4.7 69.8 1.0
N I:HIS840 4.7 77.8 1.0
CA I:ASN841 4.7 73.6 1.0
N I:ILE838 4.8 72.5 1.0
CG1 I:VAL843 4.8 73.6 1.0
CD1 I:ILE844 4.8 69.9 1.0
OD2 I:ASP845 4.9 83.7 1.0
CA I:ASP848 4.9 69.3 1.0
CA I:ASP839 4.9 76.0 1.0
N I:GLY842 5.0 67.7 1.0
C I:ILE844 5.0 69.5 1.0
C I:ASP837 5.0 75.8 1.0
N I:ASP848 5.0 72.2 1.0

Reference:

J.B.R.White, A.Silale, M.Feasy, T.Heunis, Y.Zhu, H.Zheng, A.Gajbhiye, S.Firbank, A.Basle, M.Trost, D.N.Bolam, B.Van Den Berg, N.A.Ranson. Outer Membrane Utilisomes Mediate Glycan Uptake in Gut Bacteroidetes Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06146-W
Page generated: Thu Oct 3 18:01:31 2024

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