Magnesium in PDB 8aa2: Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25

The binding sites of Magnesium atom in the Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 (pdb code 8aa2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25, PDB code: 8aa2:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:27.6 occ:1.00 OD1 A:ASN664 2.0 59.4 1.0 OD1 B:ASN401 2.0 57.2 1.0 O B:TYR273 2.2 60.5 1.0 OE1 B:GLU262 2.3 71.6 1.0 OE2 B:GLU262 2.6 74.6 1.0 O B:SER399 2.7 55.0 1.0 CD B:GLU262 2.7 71.0 1.0 CG B:ASN401 3.1 55.5 1.0 CG A:ASN664 3.2 63.5 1.0 C B:TYR273 3.3 54.4 1.0 N B:TYR273 3.7 48.4 1.0 ND2 B:ASN401 3.7 57.3 1.0 ND2 A:ASN664 3.9 68.9 1.0 N B:ASN401 3.9 47.9 1.0 C B:SER399 3.9 49.5 1.0 CA B:TYR273 4.0 44.8 1.0 CG B:GLU262 4.2 62.6 1.0 CB B:ASN401 4.2 42.8 1.0 CB A:ASN664 4.3 56.3 1.0 CA B:ASN401 4.3 43.0 1.0 CA A:ASN664 4.3 59.7 1.0 C B:LEU400 4.4 53.8 1.0 N B:SER274 4.4 46.4 1.0 CB B:TYR273 4.5 45.8 1.0 N A:ASN664 4.6 58.5 1.0 C B:GLN272 4.6 52.1 1.0 CA B:LEU400 4.7 51.0 1.0 CA B:SER274 4.7 47.5 1.0 CB B:SER399 4.7 54.1 1.0 N B:LEU400 4.8 51.9 1.0 CA B:GLN272 4.8 44.4 1.0 CA B:SER399 4.9 45.3 1.0 OG B:SER399 5.0 61.5 1.0 CB B:GLU262 5.0 62.6 1.0

Magnesium binding site 2 out of 4 in the Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1101 b:61.3 occ:1.00 OD1 A:ASN841 2.0 76.0 1.0 OD2 A:ASP848 2.0 73.9 1.0 OD1 A:ASP839 2.3 85.5 1.0 CG A:ASN841 2.5 72.2 1.0 OD1 A:ASP848 2.5 77.5 1.0 ND2 A:ASN841 2.5 69.9 1.0 CG A:ASP848 2.5 75.0 1.0 O A:VAL843 2.5 71.5 1.0 OD1 A:ASP837 2.8 69.9 1.0 CG A:ASP839 3.2 80.2 1.0 OD2 A:ASP839 3.4 76.9 1.0 OD1 A:ASP845 3.4 82.9 1.0 CG A:ASP837 3.5 72.8 1.0 OD2 A:ASP837 3.6 79.0 1.0 C A:VAL843 3.7 65.0 1.0 CB A:ASN841 3.9 66.2 1.0 CB A:ASP848 4.0 73.7 1.0 N A:ASN841 4.2 71.5 1.0 CG A:ASP845 4.3 80.7 1.0 CA A:ILE844 4.5 63.2 1.0 N A:VAL843 4.5 67.8 1.0 N A:ILE844 4.5 61.2 1.0 CA A:ASN841 4.5 71.0 1.0 N A:ASP839 4.5 76.1 1.0 CB A:ASP839 4.6 75.7 1.0 OD2 A:ASP845 4.6 78.9 1.0 N A:ASP845 4.6 70.1 1.0 CA A:ASP848 4.7 73.0 1.0 CB A:ASP837 4.7 69.3 1.0 N A:HIS840 4.7 75.1 1.0 N A:ASP848 4.7 75.4 1.0 CA A:VAL843 4.7 65.4 1.0 CA A:ASP837 4.8 68.3 1.0 CG1 A:VAL843 4.9 66.2 1.0 N A:ILE838 4.9 72.9 1.0 N A:GLY842 4.9 66.5 1.0 CA A:ASP839 4.9 75.3 1.0 C A:ILE844 5.0 61.9 1.0 CD1 A:ILE844 5.0 64.8 1.0 C A:ASP839 5.0 73.8 1.0 C A:ASN841 5.0 72.3 1.0

Magnesium binding site 3 out of 4 in the Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range: probe atom residue distance (Å) B Occ J:Mg601 b:27.6 occ:1.00 OD1 J:ASN401 2.0 57.2 1.0 OD1 I:ASN664 2.0 59.4 1.0 O J:TYR273 2.2 60.5 1.0 OE1 J:GLU262 2.3 71.6 1.0 OE2 J:GLU262 2.6 74.6 1.0 O J:SER399 2.7 55.0 1.0 CD J:GLU262 2.7 71.0 1.0 CG J:ASN401 3.1 55.5 1.0 CG I:ASN664 3.2 63.5 1.0 C J:TYR273 3.3 54.4 1.0 N J:TYR273 3.7 48.4 1.0 ND2 J:ASN401 3.7 57.3 1.0 ND2 I:ASN664 3.9 68.9 1.0 N J:ASN401 3.9 47.9 1.0 C J:SER399 3.9 49.5 1.0 CA J:TYR273 4.0 44.8 1.0 CB J:ASN401 4.2 42.8 1.0 CG J:GLU262 4.2 62.6 1.0 CA J:ASN401 4.3 43.0 1.0 CB I:ASN664 4.3 56.3 1.0 CA I:ASN664 4.4 59.7 1.0 C J:LEU400 4.4 53.8 1.0 N J:SER274 4.4 46.4 1.0 CB J:TYR273 4.5 45.8 1.0 C J:GLN272 4.6 52.1 1.0 N I:ASN664 4.6 58.5 1.0 CA J:LEU400 4.7 51.0 1.0 CA J:SER274 4.7 47.5 1.0 CB J:SER399 4.7 54.1 1.0 N J:LEU400 4.8 51.9 1.0 CA J:GLN272 4.8 44.4 1.0 CA J:SER399 4.9 45.3 1.0 OG J:SER399 5.0 61.5 1.0 CB J:GLU262 5.0 62.6 1.0

Magnesium binding site 4 out of 4 in the Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Inactive Levan Utilisation Machinery (Utilisome) in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg1101 b:61.3 occ:1.00 OD1 I:ASN841 2.0 76.0 1.0 OD2 I:ASP848 2.0 73.9 1.0 OD1 I:ASP839 2.3 85.5 1.0 CG I:ASN841 2.5 72.2 1.0 OD1 I:ASP848 2.5 77.5 1.0 ND2 I:ASN841 2.5 69.9 1.0 CG I:ASP848 2.5 75.0 1.0 O I:VAL843 2.5 71.5 1.0 OD1 I:ASP837 2.8 69.9 1.0 CG I:ASP839 3.2 80.2 1.0 OD2 I:ASP839 3.4 76.9 1.0 OD1 I:ASP845 3.4 82.9 1.0 CG I:ASP837 3.5 72.8 1.0 OD2 I:ASP837 3.6 79.0 1.0 C I:VAL843 3.7 65.0 1.0 CB I:ASN841 3.9 66.2 1.0 CB I:ASP848 4.0 73.7 1.0 N I:ASN841 4.2 71.5 1.0 CG I:ASP845 4.3 80.7 1.0 CA I:ILE844 4.5 63.2 1.0 N I:VAL843 4.5 67.8 1.0 N I:ILE844 4.5 61.2 1.0 CA I:ASN841 4.5 71.0 1.0 N I:ASP839 4.5 76.1 1.0 CB I:ASP839 4.6 75.7 1.0 OD2 I:ASP845 4.6 78.9 1.0 N I:ASP845 4.6 70.1 1.0 CA I:ASP848 4.7 73.0 1.0 CB I:ASP837 4.7 69.3 1.0 N I:HIS840 4.7 75.1 1.0 N I:ASP848 4.7 75.4 1.0 CA I:VAL843 4.7 65.4 1.0 CA I:ASP837 4.8 68.3 1.0 CG1 I:VAL843 4.9 66.2 1.0 N I:ILE838 4.9 72.9 1.0 N I:GLY842 4.9 66.5 1.0 CA I:ASP839 4.9 75.3 1.0 C I:ILE844 5.0 61.9 1.0 CD1 I:ILE844 5.0 64.8 1.0 C I:ASP839 5.0 73.8 1.0 C I:ASN841 5.0 72.3 1.0

J.B.R.White, A.Silale, M.Feasy, T.Heunis, Y.Zhu, H.Zheng, A.Gajbhiye, S.Firbank, A.Basle, M.Trost, D.N.Bolam, B.Van Den Berg, N.A.Ranson. Outer Membrane Utilisomes Mediate Glycan Uptake in Gut Bacteroidetes Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06146-W