Magnesium in PDB 8aa3: Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 (pdb code 8aa3). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25, PDB code: 8aa3:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8aa3

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Magnesium binding site 1 out of 4 in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg601

b:10.5
occ:1.00
 OD1 B:ASN401 2.1 47.0 1.0
O B:TYR273 2.1 47.5 1.0
ND2 A:ASN664 2.2 58.9 1.0
OE1 B:GLU262 2.4 55.7 1.0
O B:SER399 2.6 40.4 1.0
OE2 B:GLU262 3.0 64.0 1.0
CD B:GLU262 3.0 58.1 1.0
CG B:ASN401 3.1 41.5 1.0
C B:TYR273 3.2 42.5 1.0
CG A:ASN664 3.4 64.6 1.0
N B:TYR273 3.4 30.2 1.0
ND2 B:ASN401 3.7 41.2 1.0
CA B:TYR273 3.8 31.4 1.0
C B:SER399 3.8 34.3 1.0
OD1 A:ASN664 4.0 72.6 1.0
N B:ASN401 4.1 32.8 1.0
CB B:TYR273 4.2 33.3 1.0
CB B:ASN401 4.3 29.9 1.0
C B:GLN272 4.4 34.9 1.0
N B:SER274 4.4 37.4 1.0
CA B:ASN401 4.4 26.3 1.0
CB A:ASN664 4.4 52.4 1.0
CG B:GLU262 4.5 52.9 1.0
C B:LEU400 4.5 39.8 1.0
CB B:SER399 4.5 37.2 1.0
CA A:ASN664 4.5 53.5 1.0
CA B:GLN272 4.6 32.5 1.0
CA B:SER399 4.7 29.7 1.0
CA B:LEU400 4.7 34.8 1.0
N B:LEU400 4.7 40.0 1.0
OG B:SER399 4.7 44.7 1.0
CA B:SER274 4.8 34.0 1.0

Magnesium binding site 2 out of 4 in 8aa3

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Magnesium binding site 2 out of 4 in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1101

b:55.0
occ:1.00
 OD1 A:ASN841 2.1 70.7 1.0
OD2 A:ASP848 2.1 70.1 1.0
OD1 A:ASP839 2.2 78.5 1.0
OD1 A:ASP848 2.3 72.6 1.0
CG A:ASP848 2.5 69.2 1.0
O A:VAL843 2.7 62.7 1.0
OD1 A:ASP837 2.7 69.7 1.0
CG A:ASN841 2.8 71.0 1.0
ND2 A:ASN841 2.9 70.6 1.0
CG A:ASP839 3.2 75.9 1.0
CG A:ASP837 3.4 71.1 1.0
OD2 A:ASP839 3.4 73.3 1.0
OD2 A:ASP837 3.6 75.8 1.0
OD1 A:ASP845 3.6 77.2 1.0
C A:VAL843 3.9 60.4 1.0
CB A:ASP848 4.0 66.0 1.0
CB A:ASN841 4.2 68.0 1.0
N A:ASN841 4.3 69.1 1.0
N A:ASP839 4.5 73.8 1.0
CG A:ASP845 4.5 75.5 1.0
CA A:ILE844 4.5 59.1 1.0
CB A:ASP839 4.5 74.4 1.0
CB A:ASP837 4.6 66.8 1.0
N A:VAL843 4.6 61.8 1.0
N A:ILE844 4.6 57.5 1.0
CA A:ASP837 4.7 63.5 1.0
N A:HIS840 4.7 75.5 1.0
N A:ASP845 4.7 64.6 1.0
CA A:ASN841 4.7 69.2 1.0
CA A:ASP848 4.8 64.9 1.0
N A:ILE838 4.8 68.8 1.0
OD2 A:ASP845 4.8 74.3 1.0
CD1 A:ILE844 4.8 61.4 1.0
N A:ASP848 4.9 65.8 1.0
CA A:ASP839 4.9 72.7 1.0
CA A:VAL843 4.9 62.7 1.0
C A:ASP837 5.0 68.2 1.0
C A:ASP839 5.0 73.5 1.0

Magnesium binding site 3 out of 4 in 8aa3

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Magnesium binding site 3 out of 4 in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg601

b:10.5
occ:1.00
 OD1 J:ASN401 2.1 47.0 1.0
O J:TYR273 2.1 47.5 1.0
ND2 I:ASN664 2.2 58.9 1.0
OE1 J:GLU262 2.4 55.7 1.0
O J:SER399 2.6 40.4 1.0
OE2 J:GLU262 3.0 64.0 1.0
CD J:GLU262 3.0 58.1 1.0
CG J:ASN401 3.1 41.5 1.0
C J:TYR273 3.2 42.5 1.0
CG I:ASN664 3.4 64.6 1.0
N J:TYR273 3.4 30.2 1.0
ND2 J:ASN401 3.7 41.2 1.0
CA J:TYR273 3.8 31.4 1.0
C J:SER399 3.8 34.3 1.0
OD1 I:ASN664 4.0 72.6 1.0
N J:ASN401 4.1 32.8 1.0
CB J:TYR273 4.2 33.3 1.0
CB J:ASN401 4.3 29.9 1.0
C J:GLN272 4.4 34.9 1.0
N J:SER274 4.4 37.4 1.0
CB I:ASN664 4.4 52.4 1.0
CA J:ASN401 4.4 26.3 1.0
CG J:GLU262 4.5 52.9 1.0
C J:LEU400 4.5 39.8 1.0
CB J:SER399 4.5 37.2 1.0
CA I:ASN664 4.5 53.5 1.0
CA J:GLN272 4.6 32.5 1.0
CA J:SER399 4.7 29.7 1.0
CA J:LEU400 4.7 34.8 1.0
N J:LEU400 4.7 40.0 1.0
OG J:SER399 4.7 44.7 1.0
CA J:SER274 4.8 34.0 1.0
N I:ASN664 5.0 57.0 1.0

Magnesium binding site 4 out of 4 in 8aa3

Go back to Magnesium Binding Sites List in 8aa3
Magnesium binding site 4 out of 4 in the Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Core Suscd Transporter Units From the Inactive Levan Utilisome in the Presence of Levan Fructo-Oligosaccharides Dp 15-25 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg1101

b:55.0
occ:1.00
 OD1 I:ASN841 2.1 70.7 1.0
OD2 I:ASP848 2.1 70.1 1.0
OD1 I:ASP839 2.2 78.5 1.0
OD1 I:ASP848 2.3 72.6 1.0
CG I:ASP848 2.5 69.2 1.0
O I:VAL843 2.7 62.7 1.0
OD1 I:ASP837 2.7 69.7 1.0
CG I:ASN841 2.8 71.0 1.0
ND2 I:ASN841 2.9 70.6 1.0
CG I:ASP839 3.2 75.9 1.0
CG I:ASP837 3.4 71.1 1.0
OD2 I:ASP839 3.4 73.3 1.0
OD2 I:ASP837 3.6 75.8 1.0
OD1 I:ASP845 3.6 77.2 1.0
C I:VAL843 3.9 60.4 1.0
CB I:ASP848 4.0 66.0 1.0
CB I:ASN841 4.2 68.0 1.0
N I:ASN841 4.3 69.1 1.0
N I:ASP839 4.5 73.8 1.0
CG I:ASP845 4.5 75.5 1.0
CA I:ILE844 4.5 59.1 1.0
CB I:ASP839 4.5 74.4 1.0
CB I:ASP837 4.6 66.8 1.0
N I:VAL843 4.6 61.8 1.0
N I:ILE844 4.6 57.5 1.0
CA I:ASP837 4.7 63.5 1.0
N I:HIS840 4.7 75.5 1.0
N I:ASP845 4.7 64.6 1.0
CA I:ASN841 4.7 69.2 1.0
CA I:ASP848 4.8 64.9 1.0
N I:ILE838 4.8 68.8 1.0
OD2 I:ASP845 4.8 74.3 1.0
CD1 I:ILE844 4.8 61.4 1.0
N I:ASP848 4.9 65.8 1.0
CA I:ASP839 4.9 72.7 1.0
CA I:VAL843 4.9 62.7 1.0
C I:ASP837 5.0 68.2 1.0
C I:ASP839 5.0 73.5 1.0

Reference:

J.B.R.White, A.Silale, M.Feasy, T.Heunis, Y.Zhu, H.Zheng, A.Gajbhiye, S.Firbank, A.Basle, M.Trost, D.N.Bolam, B.Van Den Berg, N.A.Ranson. Outer Membrane Utilisomes Mediate Glycan Uptake in Gut Bacteroidetes Nature 2023.
ISSN: ESSN 1476-4687
DOI: 10.1038/S41586-023-06146-W
Page generated: Thu Jul 27 22:21:30 2023

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