Atomistry » Magnesium » PDB 8ae7-8aq1 » 8agg
Atomistry »
  Magnesium »
    PDB 8ae7-8aq1 »
      8agg »

Magnesium in PDB 8agg: Structure of the Legionella Phosphocholine Hydrolase LEM3

Protein crystallography data

The structure of Structure of the Legionella Phosphocholine Hydrolase LEM3, PDB code: 8agg was solved by M.S.Kaspers, A.Itzen, V.Pogenberg, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 66.54 / 3.60
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 78.022, 78.022, 382.014, 90, 90, 120
R / Rfree (%) 26.3 / 29.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Legionella Phosphocholine Hydrolase LEM3 (pdb code 8agg). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Legionella Phosphocholine Hydrolase LEM3, PDB code: 8agg:

Magnesium binding site 1 out of 1 in 8agg

Go back to Magnesium Binding Sites List in 8agg
Magnesium binding site 1 out of 1 in the Structure of the Legionella Phosphocholine Hydrolase LEM3


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Legionella Phosphocholine Hydrolase LEM3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg601

b:196.3
occ:1.00
OD2 A:ASP105 2.1 191.4 1.0
OD2 A:ASP254 2.1 157.9 1.0
OD1 A:ASP254 2.1 178.5 1.0
OD1 A:ASP394 2.2 180.1 1.0
OD2 A:ASP394 2.2 190.9 1.0
OD1 A:ASP105 2.2 147.2 1.0
CG A:ASP394 2.4 169.5 1.0
CG A:ASP254 2.4 140.2 1.0
CG A:ASP105 2.5 159.6 1.0
CB A:ASP394 3.8 167.3 1.0
O A:CYS395 3.9 162.5 1.0
CB A:ASP254 3.9 150.6 1.0
CB A:ASP105 4.0 140.4 1.0
OD1 A:ASP82 4.3 158.2 1.0
N A:CYS395 4.3 162.5 1.0
OD2 A:ASP82 4.4 135.6 1.0
N A:ASP254 4.6 160.2 1.0
N A:GLY255 4.7 152.3 1.0
CA A:ASP254 4.8 152.9 1.0
CG A:ASP82 4.8 154.7 1.0
C A:CYS395 4.8 153.6 1.0
CA A:ASP394 4.8 158.1 1.0
CB A:CYS395 4.8 157.6 1.0
O A:GLY106 4.8 128.1 1.0
CA A:CYS395 4.9 147.3 1.0
CA A:ASP105 4.9 122.0 1.0
C A:ASP394 4.9 160.9 1.0

Reference:

M.S.Kaspers, V.Pogenberg, S.Ernst, F.Ecker, C.Hedberg, M.Groll, A.Itzen. Dephosphocholination By Legionella Effector LEM3 Functions Through Remodelling of the Switch II Region of RAB1B Nat Commun 2023.
ISSN: ESSN 2041-1723
DOI: 10.1038/S41467-023-37621-7
Page generated: Thu Oct 3 18:07:04 2024

Last articles

Mn in 2FAH
Mn in 2EF5
Mn in 2FAR
Mn in 2FER
Mn in 2FE6
Mn in 2FAQ
Mn in 2FC0
Mn in 2FE1
Mn in 2FBV
Mn in 2FDH
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy