Magnesium in PDB 8am5: Rcii/Psi Complex, Class 3
Enzymatic activity of Rcii/Psi Complex, Class 3
Other elements in 8am5:
The structure of Rcii/Psi Complex, Class 3 also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
102;
Binding sites:
The binding sites of Magnesium atom in the Rcii/Psi Complex, Class 3
(pdb code 8am5). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 102 binding sites of Magnesium where determined in the
Rcii/Psi Complex, Class 3, PDB code: 8am5:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 1 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:117.5
occ:1.00
|
MG
|
A:CLA402
|
0.0
|
117.5
|
1.0
|
|
NE2
|
A:HIS198
|
1.9
|
128.0
|
1.0
|
|
NB
|
A:CLA402
|
2.0
|
116.1
|
1.0
|
|
ND
|
A:CLA402
|
2.0
|
117.8
|
1.0
|
|
NC
|
A:CLA402
|
2.1
|
115.8
|
1.0
|
|
NA
|
A:CLA402
|
2.1
|
114.3
|
1.0
|
|
CE1
|
A:HIS198
|
2.6
|
126.2
|
1.0
|
|
C4D
|
A:CLA402
|
2.9
|
117.4
|
1.0
|
|
C1B
|
A:CLA402
|
3.0
|
117.5
|
1.0
|
|
C4A
|
A:CLA402
|
3.0
|
114.2
|
1.0
|
|
C4B
|
A:CLA402
|
3.1
|
116.8
|
1.0
|
|
C1C
|
A:CLA402
|
3.1
|
114.9
|
1.0
|
|
C4C
|
A:CLA402
|
3.1
|
116.2
|
1.0
|
|
C1A
|
A:CLA402
|
3.1
|
114.7
|
1.0
|
|
CD2
|
A:HIS198
|
3.1
|
125.1
|
1.0
|
|
C1D
|
A:CLA402
|
3.2
|
117.7
|
1.0
|
|
CHB
|
A:CLA402
|
3.4
|
117.1
|
1.0
|
|
CHC
|
A:CLA402
|
3.4
|
116.2
|
1.0
|
|
CHA
|
A:CLA402
|
3.5
|
115.2
|
1.0
|
|
CHD
|
A:CLA402
|
3.5
|
117.5
|
1.0
|
|
ND1
|
A:HIS198
|
3.8
|
122.2
|
1.0
|
|
CE
|
A:MET183
|
3.9
|
119.2
|
1.0
|
|
CG
|
A:HIS198
|
4.1
|
121.6
|
1.0
|
|
C3D
|
A:CLA402
|
4.2
|
119.4
|
1.0
|
|
CAB
|
D:CLA402
|
4.3
|
140.1
|
1.0
|
|
C2B
|
A:CLA402
|
4.3
|
120.8
|
1.0
|
|
C3B
|
A:CLA402
|
4.3
|
119.8
|
1.0
|
|
C2C
|
A:CLA402
|
4.3
|
115.2
|
1.0
|
|
C2D
|
A:CLA402
|
4.4
|
117.9
|
1.0
|
|
C3C
|
A:CLA402
|
4.4
|
114.6
|
1.0
|
|
C3A
|
A:CLA402
|
4.4
|
116.2
|
1.0
|
|
C2A
|
A:CLA402
|
4.5
|
117.8
|
1.0
|
|
CBB
|
D:CLA402
|
4.9
|
140.3
|
1.0
|
|
CBD
|
A:CLA402
|
4.9
|
116.4
|
1.0
|
|
CG2
|
A:VAL202
|
5.0
|
134.0
|
1.0
|
|
Magnesium binding site 2 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 2 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:147.6
occ:1.00
|
MG
|
A:CLA403
|
0.0
|
147.6
|
1.0
|
|
NB
|
A:CLA403
|
2.0
|
147.9
|
1.0
|
|
ND
|
A:CLA403
|
2.0
|
145.6
|
1.0
|
|
NC
|
A:CLA403
|
2.1
|
146.5
|
1.0
|
|
NA
|
A:CLA403
|
2.1
|
148.7
|
1.0
|
|
C4D
|
A:CLA403
|
2.9
|
145.7
|
1.0
|
|
C1B
|
A:CLA403
|
3.0
|
148.1
|
1.0
|
|
C4A
|
A:CLA403
|
3.0
|
147.8
|
1.0
|
|
C4B
|
A:CLA403
|
3.1
|
146.4
|
1.0
|
|
C1C
|
A:CLA403
|
3.1
|
145.6
|
1.0
|
|
C4C
|
A:CLA403
|
3.1
|
146.8
|
1.0
|
|
C1A
|
A:CLA403
|
3.2
|
148.2
|
1.0
|
|
C1D
|
A:CLA403
|
3.2
|
145.1
|
1.0
|
|
CHB
|
A:CLA403
|
3.4
|
147.4
|
1.0
|
|
CHC
|
A:CLA403
|
3.4
|
145.3
|
1.0
|
|
CHA
|
A:CLA403
|
3.5
|
147.2
|
1.0
|
|
CHD
|
A:CLA403
|
3.5
|
146.6
|
1.0
|
|
C20
|
D:PHO401
|
3.7
|
174.6
|
1.0
|
|
O1A
|
A:CLA403
|
4.0
|
149.7
|
1.0
|
|
C3D
|
A:CLA403
|
4.3
|
145.2
|
1.0
|
|
C2B
|
A:CLA403
|
4.3
|
147.3
|
1.0
|
|
C3B
|
A:CLA403
|
4.3
|
146.7
|
1.0
|
|
C2C
|
A:CLA403
|
4.3
|
145.9
|
1.0
|
|
C2D
|
A:CLA403
|
4.4
|
144.0
|
1.0
|
|
C3C
|
A:CLA403
|
4.4
|
145.9
|
1.0
|
|
C3A
|
A:CLA403
|
4.4
|
146.6
|
1.0
|
|
C2A
|
A:CLA403
|
4.5
|
147.4
|
1.0
|
|
CBD
|
A:CLA403
|
4.9
|
147.7
|
1.0
|
|
Magnesium binding site 3 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 3 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg405
b:128.4
occ:1.00
|
MG
|
A:CLA405
|
0.0
|
128.4
|
1.0
|
|
NE2
|
A:HIS118
|
1.9
|
125.8
|
1.0
|
|
NB
|
A:CLA405
|
2.0
|
127.0
|
1.0
|
|
ND
|
A:CLA405
|
2.0
|
125.2
|
1.0
|
|
NA
|
A:CLA405
|
2.1
|
122.7
|
1.0
|
|
NC
|
A:CLA405
|
2.1
|
125.9
|
1.0
|
|
CE1
|
A:HIS118
|
2.5
|
122.4
|
1.0
|
|
C4D
|
A:CLA405
|
2.9
|
122.4
|
1.0
|
|
C1B
|
A:CLA405
|
3.0
|
125.7
|
1.0
|
|
C4A
|
A:CLA405
|
3.0
|
120.4
|
1.0
|
|
C4B
|
A:CLA405
|
3.1
|
125.7
|
1.0
|
|
C1C
|
A:CLA405
|
3.1
|
124.5
|
1.0
|
|
C4C
|
A:CLA405
|
3.1
|
124.5
|
1.0
|
|
C1A
|
A:CLA405
|
3.1
|
122.1
|
1.0
|
|
C1D
|
A:CLA405
|
3.2
|
124.2
|
1.0
|
|
CD2
|
A:HIS118
|
3.2
|
122.5
|
1.0
|
|
CHB
|
A:CLA405
|
3.4
|
122.8
|
1.0
|
|
CHC
|
A:CLA405
|
3.4
|
123.7
|
1.0
|
|
CHA
|
A:CLA405
|
3.5
|
121.3
|
1.0
|
|
CHD
|
A:CLA405
|
3.5
|
124.3
|
1.0
|
|
ND1
|
A:HIS118
|
3.8
|
117.8
|
1.0
|
|
CG
|
A:HIS118
|
4.1
|
118.7
|
1.0
|
|
CG1
|
I:VAL8
|
4.1
|
143.6
|
1.0
|
|
C3D
|
A:CLA405
|
4.3
|
121.7
|
1.0
|
|
C2B
|
A:CLA405
|
4.3
|
124.4
|
1.0
|
|
C3B
|
A:CLA405
|
4.3
|
124.6
|
1.0
|
|
C2C
|
A:CLA405
|
4.3
|
124.5
|
1.0
|
|
C2D
|
A:CLA405
|
4.4
|
121.8
|
1.0
|
|
C3C
|
A:CLA405
|
4.4
|
124.8
|
1.0
|
|
C3A
|
A:CLA405
|
4.4
|
122.5
|
1.0
|
|
CG1
|
I:VAL12
|
4.5
|
144.6
|
1.0
|
|
C2A
|
A:CLA405
|
4.5
|
123.4
|
1.0
|
|
CBD
|
A:CLA405
|
4.9
|
123.2
|
1.0
|
|
Magnesium binding site 4 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 4 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg407
b:132.6
occ:1.00
|
MG
|
A:CLA407
|
0.0
|
132.6
|
1.0
|
|
NB
|
A:CLA407
|
2.0
|
131.0
|
1.0
|
|
ND
|
A:CLA407
|
2.0
|
131.1
|
1.0
|
|
NC
|
A:CLA407
|
2.1
|
134.4
|
1.0
|
|
NA
|
A:CLA407
|
2.1
|
131.2
|
1.0
|
|
C4D
|
A:CLA407
|
2.9
|
130.2
|
1.0
|
|
C1B
|
A:CLA407
|
3.0
|
130.5
|
1.0
|
|
C4A
|
A:CLA407
|
3.0
|
130.3
|
1.0
|
|
C4B
|
A:CLA407
|
3.1
|
130.9
|
1.0
|
|
C1C
|
A:CLA407
|
3.1
|
132.2
|
1.0
|
|
C4C
|
A:CLA407
|
3.1
|
132.6
|
1.0
|
|
C1A
|
A:CLA407
|
3.2
|
131.6
|
1.0
|
|
C1D
|
A:CLA407
|
3.2
|
130.5
|
1.0
|
|
CHB
|
A:CLA407
|
3.4
|
130.5
|
1.0
|
|
CHC
|
A:CLA407
|
3.4
|
130.1
|
1.0
|
|
CHA
|
A:CLA407
|
3.5
|
131.3
|
1.0
|
|
CHD
|
A:CLA407
|
3.5
|
130.9
|
1.0
|
|
CBB
|
A:PHO404
|
4.1
|
133.4
|
1.0
|
|
C3D
|
A:CLA407
|
4.3
|
130.1
|
1.0
|
|
C2B
|
A:CLA407
|
4.3
|
131.5
|
1.0
|
|
C3B
|
A:CLA407
|
4.3
|
133.0
|
1.0
|
|
C2C
|
A:CLA407
|
4.3
|
132.9
|
1.0
|
|
C2D
|
A:CLA407
|
4.4
|
130.3
|
1.0
|
|
C3C
|
A:CLA407
|
4.4
|
131.3
|
1.0
|
|
C3A
|
A:CLA407
|
4.4
|
129.0
|
1.0
|
|
C2A
|
A:CLA407
|
4.5
|
130.9
|
1.0
|
|
O1A
|
A:CLA407
|
4.5
|
138.4
|
1.0
|
|
CG2
|
A:THR179
|
4.8
|
121.5
|
1.0
|
|
CBD
|
A:CLA407
|
4.9
|
131.5
|
1.0
|
|
Magnesium binding site 5 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 5 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg402
b:144.9
occ:1.00
|
MG
|
D:CLA402
|
0.0
|
144.9
|
1.0
|
|
NE2
|
D:HIS197
|
1.9
|
142.3
|
1.0
|
|
NB
|
D:CLA402
|
2.0
|
142.2
|
1.0
|
|
ND
|
D:CLA402
|
2.0
|
143.5
|
1.0
|
|
NC
|
D:CLA402
|
2.1
|
140.8
|
1.0
|
|
NA
|
D:CLA402
|
2.1
|
140.2
|
1.0
|
|
CE1
|
D:HIS197
|
2.6
|
141.9
|
1.0
|
|
C4D
|
D:CLA402
|
2.9
|
140.5
|
1.0
|
|
C1B
|
D:CLA402
|
3.0
|
141.1
|
1.0
|
|
C4A
|
D:CLA402
|
3.0
|
140.5
|
1.0
|
|
C4B
|
D:CLA402
|
3.1
|
140.8
|
1.0
|
|
C1C
|
D:CLA402
|
3.1
|
139.3
|
1.0
|
|
CD2
|
D:HIS197
|
3.1
|
140.1
|
1.0
|
|
C4C
|
D:CLA402
|
3.1
|
139.4
|
1.0
|
|
C1A
|
D:CLA402
|
3.2
|
140.1
|
1.0
|
|
C1D
|
D:CLA402
|
3.2
|
142.4
|
1.0
|
|
CHB
|
D:CLA402
|
3.4
|
141.3
|
1.0
|
|
CHC
|
D:CLA402
|
3.4
|
140.1
|
1.0
|
|
CHA
|
D:CLA402
|
3.5
|
139.1
|
1.0
|
|
CHD
|
D:CLA402
|
3.5
|
140.2
|
1.0
|
|
ND1
|
D:HIS197
|
3.8
|
137.7
|
1.0
|
|
CAB
|
A:CLA402
|
3.9
|
120.4
|
1.0
|
|
CG
|
D:HIS197
|
4.1
|
138.0
|
1.0
|
|
C3D
|
D:CLA402
|
4.3
|
140.8
|
1.0
|
|
C2B
|
D:CLA402
|
4.3
|
140.0
|
1.0
|
|
C3B
|
D:CLA402
|
4.3
|
139.5
|
1.0
|
|
C2C
|
D:CLA402
|
4.3
|
137.4
|
1.0
|
|
C2D
|
D:CLA402
|
4.4
|
141.2
|
1.0
|
|
C3C
|
D:CLA402
|
4.4
|
137.6
|
1.0
|
|
CBB
|
A:CLA402
|
4.4
|
122.3
|
1.0
|
|
C3A
|
D:CLA402
|
4.4
|
141.5
|
1.0
|
|
C2A
|
D:CLA402
|
4.5
|
141.9
|
1.0
|
|
C3B
|
A:CLA402
|
4.7
|
119.8
|
1.0
|
|
NE1
|
D:TRP191
|
4.8
|
138.3
|
1.0
|
|
CG2
|
D:VAL201
|
4.8
|
145.5
|
1.0
|
|
CBD
|
D:CLA402
|
4.9
|
140.6
|
1.0
|
|
Magnesium binding site 6 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 6 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg403
b:170.8
occ:1.00
|
MG
|
D:CLA403
|
0.0
|
170.8
|
1.0
|
|
NB
|
D:CLA403
|
2.0
|
170.1
|
1.0
|
|
ND
|
D:CLA403
|
2.0
|
169.6
|
1.0
|
|
NC
|
D:CLA403
|
2.1
|
171.4
|
1.0
|
|
NA
|
D:CLA403
|
2.1
|
170.5
|
1.0
|
|
C4D
|
D:CLA403
|
2.9
|
169.2
|
1.0
|
|
C1B
|
D:CLA403
|
3.0
|
169.9
|
1.0
|
|
C4A
|
D:CLA403
|
3.0
|
168.8
|
1.0
|
|
C4B
|
D:CLA403
|
3.1
|
170.0
|
1.0
|
|
C1C
|
D:CLA403
|
3.1
|
171.2
|
1.0
|
|
C4C
|
D:CLA403
|
3.1
|
171.9
|
1.0
|
|
C1D
|
D:CLA403
|
3.2
|
169.8
|
1.0
|
|
C1A
|
D:CLA403
|
3.2
|
170.7
|
1.0
|
|
CHB
|
D:CLA403
|
3.4
|
168.4
|
1.0
|
|
CHC
|
D:CLA403
|
3.4
|
170.1
|
1.0
|
|
CHA
|
D:CLA403
|
3.5
|
169.7
|
1.0
|
|
CHD
|
D:CLA403
|
3.5
|
171.1
|
1.0
|
|
NE2
|
D:HIS117
|
4.0
|
186.3
|
1.0
|
|
CE1
|
D:HIS117
|
4.1
|
187.3
|
1.0
|
|
C3D
|
D:CLA403
|
4.3
|
169.3
|
1.0
|
|
C2B
|
D:CLA403
|
4.3
|
170.0
|
1.0
|
|
C3B
|
D:CLA403
|
4.3
|
170.4
|
1.0
|
|
C2C
|
D:CLA403
|
4.3
|
171.9
|
1.0
|
|
C2D
|
D:CLA403
|
4.4
|
169.4
|
1.0
|
|
C3C
|
D:CLA403
|
4.4
|
171.8
|
1.0
|
|
C3A
|
D:CLA403
|
4.4
|
169.1
|
1.0
|
|
C2A
|
D:CLA403
|
4.5
|
171.0
|
1.0
|
|
CBD
|
D:CLA403
|
4.9
|
169.2
|
1.0
|
|
Magnesium binding site 7 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 7 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mg801
b:35.7
occ:1.00
|
MG
|
a:CL0801
|
0.0
|
35.7
|
1.0
|
|
NE2
|
a:HIS676
|
1.9
|
40.9
|
1.0
|
|
NB
|
a:CL0801
|
2.0
|
35.1
|
1.0
|
|
ND
|
a:CL0801
|
2.0
|
30.6
|
1.0
|
|
NA
|
a:CL0801
|
2.1
|
33.8
|
1.0
|
|
NC
|
a:CL0801
|
2.1
|
33.8
|
1.0
|
|
CE1
|
a:HIS676
|
2.7
|
44.1
|
1.0
|
|
C4D
|
a:CL0801
|
2.9
|
28.0
|
1.0
|
|
C1B
|
a:CL0801
|
3.0
|
27.8
|
1.0
|
|
C4A
|
a:CL0801
|
3.0
|
30.5
|
1.0
|
|
C4B
|
a:CL0801
|
3.0
|
33.5
|
1.0
|
|
CD2
|
a:HIS676
|
3.1
|
38.8
|
1.0
|
|
C1C
|
a:CL0801
|
3.1
|
34.3
|
1.0
|
|
C4C
|
a:CL0801
|
3.1
|
33.4
|
1.0
|
|
C1A
|
a:CL0801
|
3.1
|
33.2
|
1.0
|
|
C1D
|
a:CL0801
|
3.1
|
36.6
|
1.0
|
|
CHB
|
a:CL0801
|
3.4
|
28.5
|
1.0
|
|
CHC
|
a:CL0801
|
3.4
|
33.0
|
1.0
|
|
CHA
|
a:CL0801
|
3.5
|
23.0
|
1.0
|
|
CHD
|
a:CL0801
|
3.5
|
37.8
|
1.0
|
|
CAB
|
b:CLA801
|
3.6
|
40.1
|
1.0
|
|
ND1
|
a:HIS676
|
3.9
|
34.1
|
1.0
|
|
C3B
|
b:CLA801
|
4.0
|
40.8
|
1.0
|
|
CG
|
a:HIS676
|
4.1
|
33.9
|
1.0
|
|
C3D
|
a:CL0801
|
4.3
|
40.1
|
1.0
|
|
C2B
|
a:CL0801
|
4.3
|
35.3
|
1.0
|
|
C3B
|
a:CL0801
|
4.3
|
39.0
|
1.0
|
|
C2C
|
a:CL0801
|
4.3
|
40.0
|
1.0
|
|
CBB
|
b:CLA801
|
4.3
|
41.2
|
1.0
|
|
C2D
|
a:CL0801
|
4.4
|
40.2
|
1.0
|
|
C3C
|
a:CL0801
|
4.4
|
38.2
|
1.0
|
|
C3A
|
a:CL0801
|
4.4
|
25.8
|
1.0
|
|
CHC
|
b:CLA801
|
4.4
|
32.3
|
1.0
|
|
C4B
|
b:CLA801
|
4.4
|
31.2
|
1.0
|
|
C2A
|
a:CL0801
|
4.4
|
31.3
|
1.0
|
|
CZ
|
b:PHE617
|
4.7
|
48.7
|
1.0
|
|
C2B
|
b:CLA801
|
4.8
|
38.7
|
1.0
|
|
CBD
|
a:CL0801
|
4.9
|
23.1
|
1.0
|
|
Magnesium binding site 8 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 8 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mg802
b:50.8
occ:1.00
|
MG
|
a:CLA802
|
0.0
|
50.8
|
1.0
|
|
NB
|
a:CLA802
|
2.0
|
45.7
|
1.0
|
|
ND
|
a:CLA802
|
2.0
|
47.1
|
1.0
|
|
NC
|
a:CLA802
|
2.1
|
40.4
|
1.0
|
|
NA
|
a:CLA802
|
2.1
|
47.7
|
1.0
|
|
C4D
|
a:CLA802
|
2.9
|
37.6
|
1.0
|
|
C1B
|
a:CLA802
|
3.0
|
38.0
|
1.0
|
|
C4B
|
a:CLA802
|
3.0
|
48.6
|
1.0
|
|
C4A
|
a:CLA802
|
3.0
|
40.5
|
1.0
|
|
C1C
|
a:CLA802
|
3.1
|
41.7
|
1.0
|
|
C4C
|
a:CLA802
|
3.1
|
45.7
|
1.0
|
|
C1D
|
a:CLA802
|
3.2
|
45.6
|
1.0
|
|
C1A
|
a:CLA802
|
3.2
|
43.2
|
1.0
|
|
CBB
|
a:CLA803
|
3.4
|
49.5
|
1.0
|
|
CHB
|
a:CLA802
|
3.4
|
36.6
|
1.0
|
|
CHC
|
a:CLA802
|
3.4
|
46.4
|
1.0
|
|
CHA
|
a:CLA802
|
3.5
|
39.7
|
1.0
|
|
CHD
|
a:CLA802
|
3.5
|
41.2
|
1.0
|
|
C2B
|
a:CLA802
|
4.2
|
47.9
|
1.0
|
|
C3B
|
a:CLA802
|
4.2
|
41.7
|
1.0
|
|
CAB
|
a:CLA803
|
4.2
|
51.1
|
1.0
|
|
C3D
|
a:CLA802
|
4.3
|
32.7
|
1.0
|
|
C2C
|
a:CLA802
|
4.3
|
39.0
|
1.0
|
|
C2D
|
a:CLA802
|
4.4
|
47.8
|
1.0
|
|
C3C
|
a:CLA802
|
4.4
|
50.0
|
1.0
|
|
C3A
|
a:CLA802
|
4.4
|
37.8
|
1.0
|
|
CB
|
a:ALA680
|
4.4
|
18.2
|
1.0
|
|
C2A
|
a:CLA802
|
4.5
|
37.8
|
1.0
|
|
OD1
|
b:ASN582
|
4.5
|
58.6
|
1.0
|
|
CZ2
|
b:TRP586
|
4.8
|
29.2
|
1.0
|
|
CBD
|
a:CLA802
|
4.9
|
35.5
|
1.0
|
|
Magnesium binding site 9 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 9 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mg803
b:65.0
occ:1.00
|
MG
|
a:CLA803
|
0.0
|
65.0
|
1.0
|
|
NB
|
a:CLA803
|
2.0
|
44.0
|
1.0
|
|
ND
|
a:CLA803
|
2.0
|
44.1
|
1.0
|
|
NA
|
a:CLA803
|
2.1
|
44.0
|
1.0
|
|
NC
|
a:CLA803
|
2.1
|
50.3
|
1.0
|
|
SD
|
a:MET684
|
2.3
|
48.3
|
1.0
|
|
C4D
|
a:CLA803
|
2.9
|
47.4
|
1.0
|
|
C1B
|
a:CLA803
|
3.0
|
40.3
|
1.0
|
|
C4A
|
a:CLA803
|
3.0
|
43.6
|
1.0
|
|
C4B
|
a:CLA803
|
3.1
|
45.6
|
1.0
|
|
C1C
|
a:CLA803
|
3.1
|
38.0
|
1.0
|
|
CG
|
a:MET684
|
3.1
|
47.8
|
1.0
|
|
C4C
|
a:CLA803
|
3.1
|
49.8
|
1.0
|
|
C1D
|
a:CLA803
|
3.1
|
35.8
|
1.0
|
|
C1A
|
a:CLA803
|
3.1
|
36.8
|
1.0
|
|
CHB
|
a:CLA803
|
3.4
|
41.9
|
1.0
|
|
CHC
|
a:CLA803
|
3.4
|
36.5
|
1.0
|
|
CHA
|
a:CLA803
|
3.5
|
41.5
|
1.0
|
|
CHD
|
a:CLA803
|
3.5
|
38.6
|
1.0
|
|
NE1
|
b:TRP579
|
3.7
|
44.0
|
1.0
|
|
CE
|
a:MET684
|
3.9
|
45.6
|
1.0
|
|
CB
|
a:MET684
|
4.0
|
41.8
|
1.0
|
|
CZ2
|
b:TRP579
|
4.2
|
38.2
|
1.0
|
|
C3D
|
a:CLA803
|
4.3
|
52.4
|
1.0
|
|
C2B
|
a:CLA803
|
4.3
|
46.7
|
1.0
|
|
C3B
|
a:CLA803
|
4.3
|
51.2
|
1.0
|
|
C2C
|
a:CLA803
|
4.3
|
43.7
|
1.0
|
|
CE2
|
b:TRP579
|
4.3
|
39.9
|
1.0
|
|
C3C
|
a:CLA803
|
4.4
|
49.9
|
1.0
|
|
C2D
|
a:CLA803
|
4.4
|
41.4
|
1.0
|
|
C3A
|
a:CLA803
|
4.4
|
44.2
|
1.0
|
|
C2A
|
a:CLA803
|
4.4
|
36.9
|
1.0
|
|
CD1
|
b:TRP579
|
4.8
|
39.1
|
1.0
|
|
CBD
|
a:CLA803
|
4.9
|
44.1
|
1.0
|
|
Magnesium binding site 10 out
of 102 in 8am5
Go back to
Magnesium Binding Sites List in 8am5
Magnesium binding site 10 out
of 102 in the Rcii/Psi Complex, Class 3
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Rcii/Psi Complex, Class 3 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mg804
b:52.4
occ:1.00
|
MG
|
a:CLA804
|
0.0
|
52.4
|
1.0
|
|
NE2
|
a:HIS52
|
1.9
|
73.8
|
1.0
|
|
NB
|
a:CLA804
|
2.0
|
55.5
|
1.0
|
|
ND
|
a:CLA804
|
2.0
|
55.8
|
1.0
|
|
NC
|
a:CLA804
|
2.1
|
54.0
|
1.0
|
|
NA
|
a:CLA804
|
2.1
|
58.6
|
1.0
|
|
CE1
|
a:HIS52
|
2.6
|
68.2
|
1.0
|
|
C4D
|
a:CLA804
|
2.9
|
51.8
|
1.0
|
|
C1B
|
a:CLA804
|
3.0
|
54.0
|
1.0
|
|
C4A
|
a:CLA804
|
3.0
|
61.4
|
1.0
|
|
C4B
|
a:CLA804
|
3.1
|
53.7
|
1.0
|
|
C1C
|
a:CLA804
|
3.1
|
55.5
|
1.0
|
|
C4C
|
a:CLA804
|
3.1
|
53.6
|
1.0
|
|
CD2
|
a:HIS52
|
3.1
|
70.8
|
1.0
|
|
C1A
|
a:CLA804
|
3.1
|
51.8
|
1.0
|
|
C1D
|
a:CLA804
|
3.2
|
57.8
|
1.0
|
|
CHB
|
a:CLA804
|
3.4
|
56.7
|
1.0
|
|
CHC
|
a:CLA804
|
3.4
|
50.3
|
1.0
|
|
CHA
|
a:CLA804
|
3.5
|
48.2
|
1.0
|
|
CHD
|
a:CLA804
|
3.5
|
54.1
|
1.0
|
|
CG
|
j:PRO12
|
3.7
|
72.4
|
1.0
|
|
ND1
|
a:HIS52
|
3.8
|
58.8
|
1.0
|
|
CB
|
j:PRO12
|
3.8
|
67.5
|
1.0
|
|
CG
|
a:HIS52
|
4.1
|
57.7
|
1.0
|
|
C3D
|
a:CLA804
|
4.3
|
54.1
|
1.0
|
|
C2B
|
a:CLA804
|
4.3
|
56.6
|
1.0
|
|
C3B
|
a:CLA804
|
4.3
|
54.0
|
1.0
|
|
C2C
|
a:CLA804
|
4.3
|
60.5
|
1.0
|
|
C2D
|
a:CLA804
|
4.4
|
55.7
|
1.0
|
|
C3C
|
a:CLA804
|
4.4
|
59.2
|
1.0
|
|
C3A
|
a:CLA804
|
4.4
|
58.5
|
1.0
|
|
CD
|
j:PRO12
|
4.4
|
72.3
|
1.0
|
|
C2A
|
a:CLA804
|
4.5
|
54.6
|
1.0
|
|
CBD
|
a:CLA804
|
4.9
|
55.5
|
1.0
|
|
Reference:
Z.Zhao,
I.Vercellino,
J.Knoppova,
R.Sobotka,
J.W.Murray,
P.J.Nixon,
L.A.Sazanov,
J.Komenda.
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ISSN: ESSN 2041-1723
PubMed: 37542031
DOI: 10.1038/S41467-023-40388-6
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