Atomistry » Magnesium » PDB 8ac0-8anc » 8anc
Atomistry »
  Magnesium »
    PDB 8ac0-8anc »
      8anc »

Magnesium in PDB 8anc: 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex

Enzymatic activity of 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex

All present enzymatic activity of 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex:
2.3.1.286;

Protein crystallography data

The structure of 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex, PDB code: 8anc was solved by M.Weyand, C.Steegborn, L.Debbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.68 / 1.11
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 82.6, 112.39, 62.69, 90, 90, 90
R / Rfree (%) 12.7 / 14.6

Other elements in 8anc:

The structure of 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex (pdb code 8anc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex, PDB code: 8anc:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8anc

Go back to Magnesium Binding Sites List in 8anc
Magnesium binding site 1 out of 3 in the 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:26.8
occ:1.00
O A:HOH596 1.7 53.4 1.0
O A:HOH578 2.2 54.2 1.0
OE2 A:GLU89 2.3 14.3 1.0
O A:HOH674 2.4 30.4 1.0
O A:HOH704 2.9 49.1 1.0
CD A:GLU89 3.4 10.8 1.0
O A:HOH570 3.9 29.2 1.0
CG A:GLU89 4.1 9.9 1.0
OE1 A:GLU89 4.2 10.9 1.0
NH1 A:ARG85 4.4 14.6 1.0
OE1 A:GLN93 4.5 12.1 1.0
O A:HOH701 4.6 36.8 1.0
O A:HOH548 4.6 36.2 1.0
CB A:GLU89 4.7 8.7 1.0
CG A:GLU86 4.7 12.5 1.0
NE2 A:GLN93 4.7 13.1 1.0
CG2 A:THR90 4.7 8.1 0.2
OG1 A:THR90 4.9 13.8 0.8

Magnesium binding site 2 out of 3 in 8anc

Go back to Magnesium Binding Sites List in 8anc
Magnesium binding site 2 out of 3 in the 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:8.4
occ:0.50
O A:HOH614 2.3 21.7 1.0
O A:HOH741 2.4 46.2 1.0
OE2 A:GLU2 2.4 10.6 1.0
O A:HOH435 2.5 10.8 1.0
CD A:GLU2 3.4 8.9 1.0
OE1 A:GLU2 3.7 10.2 1.0
O A:HOH637 4.3 12.3 1.0
O A:HOH473 4.5 12.6 1.0
CG A:GLU2 4.7 7.5 1.0
CA A:GLU2 4.9 6.3 1.0
N A:ARG3 5.0 6.4 1.0

Magnesium binding site 3 out of 3 in 8anc

Go back to Magnesium Binding Sites List in 8anc
Magnesium binding site 3 out of 3 in the 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:31.5
occ:1.00
O A:HOH565 2.1 26.0 1.0
O A:HOH569 2.6 14.9 1.0
O A:HOH692 2.7 34.7 1.0
OE1 A:GLU31 2.9 19.7 1.0
NZ A:LYS27 3.0 15.7 1.0
O A:HOH676 3.6 40.4 1.0
CD A:GLU31 3.7 14.8 1.0
CG A:LYS27 3.7 8.1 1.0
CD A:LYS27 3.7 11.6 1.0
O A:HOH466 3.8 21.6 1.0
OE2 A:GLU31 3.8 18.3 1.0
CE A:LYS27 4.0 12.6 1.0
N A:SER-3 4.4 24.0 1.0
CB A:LYS27 4.5 7.0 1.0
CA A:GLY-4 4.5 41.4 1.0
N A:GLY28 4.5 6.1 1.0
CA A:GLY28 4.7 6.9 1.0
C A:LYS27 4.8 6.6 1.0
N A:MET-2 4.8 13.1 1.0
C A:GLY-4 4.8 21.1 1.0
CG A:MET-2 4.9 11.6 1.0
N A:GLY-4 4.9 48.6 1.0
O A:HOH757 4.9 38.0 1.0
CG A:GLU31 5.0 10.1 1.0

Reference:

M.Weyand, C.Steegborn. 14-3-3 Sigma Sirtuin-3 Phospho-Peptide Complex To Be Published.
Page generated: Thu Oct 3 18:11:05 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy