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Magnesium in PDB 8as7: Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation]

Enzymatic activity of Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation]

All present enzymatic activity of Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation]:
2.7.7.48;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation] (pdb code 8as7). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation], PDB code: 8as7:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8as7

Go back to Magnesium Binding Sites List in 8as7
Magnesium binding site 1 out of 2 in the Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2101

b:28.0
occ:1.00
O A:ALA986 2.2 28.9 1.0
O1B A:2KH2104 2.5 40.8 1.0
O2A A:2KH2104 2.7 40.8 1.0
O1G A:2KH2104 2.7 40.8 1.0
OD2 A:ASP1126 3.0 33.3 1.0
C A:ALA986 3.4 28.9 1.0
N A:ALA986 3.6 28.9 1.0
PB A:2KH2104 3.7 40.8 1.0
CG A:ASP1126 3.9 33.3 1.0
PA A:2KH2104 4.0 40.8 1.0
CA A:ALA986 4.0 28.9 1.0
PG A:2KH2104 4.0 40.8 1.0
O3B A:2KH2104 4.1 40.8 1.0
N3A A:2KH2104 4.2 40.8 1.0
NZ A:LYS1170 4.3 27.9 0.5
CB A:ALA986 4.4 28.9 1.0
CB A:ASP985 4.5 27.8 1.0
N A:LYS987 4.5 26.8 1.0
O G:HOH101 4.5 34.6 1.0
C5' A:2KH2104 4.5 40.8 1.0
C A:ASP985 4.6 27.8 1.0
CB A:ASP1126 4.7 33.3 1.0
OD1 A:ASP1126 4.7 33.3 1.0
CA A:LYS987 4.8 26.8 1.0
O5' A:2KH2104 4.8 40.8 1.0
CA A:ASP985 4.8 27.8 1.0
O3G A:2KH2104 4.9 40.8 1.0
O2B A:2KH2104 5.0 40.8 1.0

Magnesium binding site 2 out of 2 in 8as7

Go back to Magnesium Binding Sites List in 8as7
Magnesium binding site 2 out of 2 in the Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Sftsv L Protein Stalled at Early Elongation [Early- Elongation] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2102

b:28.8
occ:1.00
OD1 A:ASP1127 2.1 32.7 1.0
OD1 A:ASP985 2.3 27.8 1.0
O A:HOH2201 2.5 27.3 1.0
O A:HOH2203 2.6 26.9 1.0
CG A:ASP1127 3.2 32.7 1.0
O A:ASN984 3.3 22.4 1.0
CG A:ASP985 3.3 27.8 1.0
OD2 A:ASP1127 3.6 32.7 1.0
OD2 A:ASP985 3.7 27.8 1.0
OE1 A:GLU1180 3.8 29.2 1.0
O A:TYR1181 3.8 30.9 1.0
OE2 A:GLU1180 4.0 29.2 1.0
C A:ASN984 4.1 22.4 1.0
CD A:GLU1180 4.3 29.2 1.0
CB A:ASP1127 4.5 32.7 1.0
O A:SER1128 4.6 27.7 1.0
N A:ASN984 4.6 22.4 1.0
CB A:ASP985 4.6 27.8 1.0
O A:GLU1180 4.6 29.2 1.0
N A:ASP985 4.7 27.8 1.0
CA A:ASP985 4.7 27.8 1.0
N A:SER1128 4.8 27.7 1.0
C A:SER983 4.8 24.2 1.0
C A:TYR1181 4.8 30.9 1.0
CA A:ASP1127 4.8 32.7 1.0
CA A:ASN984 4.9 22.4 1.0
CB A:SER983 5.0 24.2 1.0

Reference:

H.M.Williams, S.R.Thorkelsson, D.Vogel, M.Milewski, C.Busch, S.Cusack, K.Grunewald, E.R.J.Quemin, M.Rosenthal. Structural Insights Into Viral Genome Replication By the Severe Fever with Thrombocytopenia Syndrome Virus L Protein Nucleic Acids Res. 2023.
ISSN: ESSN 1362-4962
DOI: 10.1093/NAR/GKAC1249
Page generated: Thu Oct 3 18:43:07 2024

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