Atomistry » Magnesium » PDB 8anf-8au2 » 8asd
Atomistry »
  Magnesium »
    PDB 8anf-8au2 »
      8asd »

Magnesium in PDB 8asd: Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation]

Enzymatic activity of Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation]

All present enzymatic activity of Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation]:
2.7.7.48;

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation] (pdb code 8asd). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation], PDB code: 8asd:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8asd

Go back to Magnesium Binding Sites List in 8asd
Magnesium binding site 1 out of 3 in the Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2101

b:18.9
occ:1.00
OD1 A:ASP1127 2.1 25.3 1.0
O G:HOH101 2.2 23.4 1.0
O3' G:C13 2.4 27.1 1.0
OD1 A:ASP985 2.4 21.6 1.0
OD1 A:ASP1126 2.6 26.8 1.0
O2A A:2KH2104 2.7 27.1 1.0
CG A:ASP1127 3.1 25.3 1.0
OD2 A:ASP1126 3.2 26.8 1.0
CG A:ASP1126 3.2 26.8 1.0
OD2 A:ASP1127 3.5 25.3 1.0
CG A:ASP985 3.5 21.6 1.0
C3' G:C13 3.7 27.1 1.0
PA A:2KH2104 3.7 27.1 1.0
MG A:MG2102 3.9 27.1 1.0
O5' A:2KH2104 4.0 27.1 1.0
O1A A:2KH2104 4.0 27.1 1.0
O G:HOH102 4.1 42.4 1.0
OD2 A:ASP985 4.1 21.6 1.0
C5' A:2KH2104 4.2 27.1 1.0
C4' G:C13 4.2 27.1 1.0
C5' G:C13 4.4 27.1 1.0
CB A:ASP1127 4.4 25.3 1.0
N A:ASP1127 4.5 25.3 1.0
CB A:ASP1126 4.6 26.8 1.0
CB A:ASP985 4.7 21.6 1.0
CA A:ASP1127 4.8 25.3 1.0
C A:ASP1126 4.8 26.8 1.0
O2' G:C13 4.8 27.1 1.0
C2' G:C13 4.8 27.1 1.0
O5' G:C13 5.0 27.1 1.0

Magnesium binding site 2 out of 3 in 8asd

Go back to Magnesium Binding Sites List in 8asd
Magnesium binding site 2 out of 3 in the Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2102

b:27.1
occ:1.00
O3G A:2KH2104 2.1 27.1 1.0
O1B A:2KH2104 2.2 27.1 1.0
O2A A:2KH2104 2.3 27.1 1.0
OD2 A:ASP1126 2.3 26.8 1.0
O A:ALA986 2.4 21.4 1.0
OD2 A:ASP985 2.5 21.6 1.0
PB A:2KH2104 3.2 27.1 1.0
CG A:ASP985 3.3 21.6 1.0
PG A:2KH2104 3.4 27.1 1.0
PA A:2KH2104 3.5 27.1 1.0
OD1 A:ASP985 3.5 21.6 1.0
C A:ALA986 3.5 21.4 1.0
CG A:ASP1126 3.6 26.8 1.0
O3B A:2KH2104 3.6 27.1 1.0
N3A A:2KH2104 3.6 27.1 1.0
MG A:MG2101 3.9 18.9 1.0
N A:ALA986 3.9 21.4 1.0
O1G A:2KH2104 4.1 27.1 1.0
C5' A:2KH2104 4.2 27.1 1.0
NZ A:LYS1170 4.2 24.5 1.0
CA A:ALA986 4.3 21.4 1.0
OD1 A:ASP1126 4.3 26.8 1.0
O5' A:2KH2104 4.4 27.1 1.0
O2G A:2KH2104 4.5 27.1 1.0
O2B A:2KH2104 4.5 27.1 1.0
N A:LYS987 4.6 22.7 1.0
CB A:ASP1126 4.6 26.8 1.0
O1A A:2KH2104 4.6 27.1 1.0
N A:LYS988 4.6 26.0 1.0
CB A:ASP985 4.7 21.6 1.0
CE A:LYS1170 4.7 24.5 1.0
CB A:ALA986 4.8 21.4 1.0
CA A:LYS987 4.8 22.7 1.0
C A:ASP985 4.8 21.6 1.0
CB A:TRP989 4.9 27.1 1.0
N A:TRP989 4.9 27.1 1.0
O G:HOH101 5.0 23.4 1.0

Magnesium binding site 3 out of 3 in 8asd

Go back to Magnesium Binding Sites List in 8asd
Magnesium binding site 3 out of 3 in the Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation]


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Sftsv L Protein Stalled at Late Elongation [Late- Elongation] within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg2103

b:44.8
occ:1.00
OP1 E:A5 2.0 59.2 1.0
OE2 A:GLU126 2.1 39.0 1.0
CD A:GLU126 2.9 39.0 1.0
OE1 A:GLU126 3.2 39.0 1.0
P E:A5 3.3 59.2 1.0
O3' E:C4 3.8 66.3 1.0
CB A:ALA112 3.9 47.8 1.0
NE2 A:HIS80 3.9 39.3 1.0
O A:PHE127 3.9 35.0 1.0
OP2 E:A5 4.1 59.2 1.0
N A:ALA112 4.1 47.8 1.0
CG A:GLU126 4.2 39.0 1.0
N A:PHE127 4.3 35.0 1.0
CA A:ALA112 4.3 47.8 1.0
NZ A:LYS145 4.4 39.3 1.0
CE1 A:HIS80 4.4 39.3 1.0
O5' E:A5 4.5 59.2 1.0
O A:THR110 4.7 60.8 1.0
C A:PHE127 4.9 35.0 1.0
C5' E:A5 4.9 59.2 1.0
C A:PRO111 4.9 53.6 1.0
CD2 A:HIS80 4.9 39.3 1.0
OD1 A:ASP92 4.9 82.9 1.0

Reference:

H.M.Williams, S.R.Thorkelsson, D.Vogel, M.Milewski, C.Busch, S.Cusack, K.Grunewald, E.R.J.Quemin, M.Rosenthal. Structural Insights Into Viral Genome Replication By the Severe Fever with Thrombocytopenia Syndrome Virus L Protein Nucleic Acids Res. 2023.
ISSN: ESSN 1362-4962
DOI: 10.1093/NAR/GKAC1249
Page generated: Thu Oct 3 18:43:33 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy