Magnesium in PDB 8b64: Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
Other elements in 8b64:
The structure of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
34;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
(pdb code 8b64). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 34 binding sites of Magnesium where determined in the
Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus, PDB code: 8b64:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 1 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
a:Mg100
b:25.0
occ:1.00
|
MG
|
a:BCL100
|
0.0
|
25.0
|
1.0
|
|
ND
|
a:BCL100
|
2.0
|
24.2
|
1.0
|
|
NB
|
a:BCL100
|
2.1
|
24.1
|
1.0
|
|
NC
|
a:BCL100
|
2.1
|
29.0
|
1.0
|
|
NA
|
a:BCL100
|
2.2
|
28.3
|
1.0
|
|
NE2
|
a:HIS32
|
2.6
|
16.3
|
1.0
|
|
C4D
|
a:BCL100
|
3.0
|
23.8
|
1.0
|
|
C4B
|
a:BCL100
|
3.1
|
27.3
|
1.0
|
|
C1B
|
a:BCL100
|
3.1
|
24.0
|
1.0
|
|
C1C
|
a:BCL100
|
3.1
|
23.1
|
1.0
|
|
C1D
|
a:BCL100
|
3.1
|
26.9
|
1.0
|
|
C4A
|
a:BCL100
|
3.1
|
27.1
|
1.0
|
|
C4C
|
a:BCL100
|
3.2
|
22.7
|
1.0
|
|
C1A
|
a:BCL100
|
3.2
|
26.3
|
1.0
|
|
CHC
|
a:BCL100
|
3.4
|
25.7
|
1.0
|
|
CHB
|
a:BCL100
|
3.4
|
25.3
|
1.0
|
|
CHA
|
a:BCL100
|
3.5
|
23.8
|
1.0
|
|
CHD
|
a:BCL100
|
3.5
|
24.8
|
1.0
|
|
CE1
|
a:HIS32
|
3.5
|
19.9
|
1.0
|
|
CD2
|
a:HIS32
|
3.6
|
19.1
|
1.0
|
|
C3D
|
a:BCL100
|
4.2
|
23.6
|
1.0
|
|
C2B
|
a:BCL100
|
4.3
|
24.8
|
1.0
|
|
C2D
|
a:BCL100
|
4.3
|
22.1
|
1.0
|
|
C3B
|
a:BCL100
|
4.3
|
27.5
|
1.0
|
|
CMD
|
A:BCL202
|
4.4
|
23.7
|
1.0
|
|
C2C
|
a:BCL100
|
4.4
|
24.5
|
1.0
|
|
C3C
|
a:BCL100
|
4.5
|
27.3
|
1.0
|
|
C3A
|
a:BCL100
|
4.5
|
25.6
|
1.0
|
|
C2A
|
a:BCL100
|
4.5
|
24.4
|
1.0
|
|
ND1
|
a:HIS32
|
4.7
|
27.9
|
1.0
|
|
CG
|
a:HIS32
|
4.8
|
17.8
|
1.0
|
|
CBD
|
a:BCL100
|
4.9
|
23.9
|
1.0
|
|
Magnesium binding site 2 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 2 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:Mg101
b:33.9
occ:1.00
|
MG
|
e:BCL101
|
0.0
|
33.9
|
1.0
|
|
ND
|
e:BCL101
|
2.0
|
5.6
|
1.0
|
|
NB
|
e:BCL101
|
2.1
|
15.4
|
1.0
|
|
NC
|
e:BCL101
|
2.1
|
17.5
|
1.0
|
|
NA
|
e:BCL101
|
2.2
|
19.9
|
1.0
|
|
C4D
|
e:BCL101
|
3.0
|
8.4
|
1.0
|
|
C1B
|
e:BCL101
|
3.1
|
10.0
|
1.0
|
|
C4B
|
e:BCL101
|
3.1
|
7.7
|
1.0
|
|
C1C
|
e:BCL101
|
3.1
|
11.1
|
1.0
|
|
NE2
|
e:HIS32
|
3.1
|
5.9
|
1.0
|
|
C4A
|
e:BCL101
|
3.1
|
11.2
|
1.0
|
|
C1D
|
e:BCL101
|
3.1
|
11.2
|
1.0
|
|
C4C
|
e:BCL101
|
3.2
|
10.9
|
1.0
|
|
C1A
|
e:BCL101
|
3.2
|
16.5
|
1.0
|
|
CHC
|
e:BCL101
|
3.4
|
7.5
|
1.0
|
|
CHB
|
e:BCL101
|
3.4
|
11.0
|
1.0
|
|
CHA
|
e:BCL101
|
3.5
|
13.7
|
1.0
|
|
CHD
|
e:BCL101
|
3.5
|
11.1
|
1.0
|
|
CBB
|
D:BCL101
|
3.8
|
4.3
|
1.0
|
|
CE1
|
e:HIS32
|
4.0
|
7.1
|
1.0
|
|
C18
|
E:SPO202
|
4.0
|
15.3
|
1.0
|
|
CD2
|
e:HIS32
|
4.1
|
5.3
|
1.0
|
|
CMB
|
D:BCL101
|
4.2
|
5.7
|
1.0
|
|
C3D
|
e:BCL101
|
4.2
|
11.2
|
1.0
|
|
C2B
|
e:BCL101
|
4.3
|
9.9
|
1.0
|
|
C2D
|
e:BCL101
|
4.3
|
12.9
|
1.0
|
|
C3B
|
e:BCL101
|
4.3
|
8.7
|
1.0
|
|
C2C
|
e:BCL101
|
4.4
|
12.8
|
1.0
|
|
C3C
|
e:BCL101
|
4.5
|
14.4
|
1.0
|
|
C3A
|
e:BCL101
|
4.5
|
12.4
|
1.0
|
|
C2A
|
e:BCL101
|
4.5
|
14.9
|
1.0
|
|
C20
|
E:SPO202
|
4.6
|
16.4
|
1.0
|
|
C2B
|
D:BCL101
|
4.7
|
13.5
|
1.0
|
|
C17
|
E:SPO202
|
4.7
|
22.9
|
1.0
|
|
CAB
|
D:BCL101
|
4.8
|
10.2
|
1.0
|
|
CBD
|
e:BCL101
|
5.0
|
8.5
|
1.0
|
|
C3B
|
D:BCL101
|
5.0
|
11.8
|
1.0
|
|
Magnesium binding site 3 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 3 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
e:Mg102
b:20.3
occ:1.00
|
MG
|
e:BCL102
|
0.0
|
20.3
|
1.0
|
|
ND
|
e:BCL102
|
2.0
|
10.8
|
1.0
|
|
NB
|
e:BCL102
|
2.1
|
15.4
|
1.0
|
|
NC
|
e:BCL102
|
2.1
|
18.6
|
1.0
|
|
NA
|
e:BCL102
|
2.2
|
21.9
|
1.0
|
|
NE2
|
E:HIS39
|
2.5
|
6.5
|
1.0
|
|
C4D
|
e:BCL102
|
3.0
|
11.5
|
1.0
|
|
C4B
|
e:BCL102
|
3.1
|
14.1
|
1.0
|
|
C1B
|
e:BCL102
|
3.1
|
14.0
|
1.0
|
|
C1C
|
e:BCL102
|
3.1
|
15.9
|
1.0
|
|
C4A
|
e:BCL102
|
3.1
|
15.2
|
1.0
|
|
C1D
|
e:BCL102
|
3.2
|
12.3
|
1.0
|
|
C4C
|
e:BCL102
|
3.2
|
12.9
|
1.0
|
|
C1A
|
e:BCL102
|
3.2
|
20.4
|
1.0
|
|
CD2
|
E:HIS39
|
3.2
|
10.2
|
1.0
|
|
CHC
|
e:BCL102
|
3.4
|
13.1
|
1.0
|
|
CHB
|
e:BCL102
|
3.4
|
19.6
|
1.0
|
|
CHA
|
e:BCL102
|
3.5
|
19.9
|
1.0
|
|
CHD
|
e:BCL102
|
3.5
|
11.2
|
1.0
|
|
CE1
|
E:HIS39
|
3.7
|
14.9
|
1.0
|
|
C3D
|
e:BCL102
|
4.2
|
2.4
|
1.0
|
|
CMB
|
f:BCL101
|
4.3
|
12.3
|
1.0
|
|
C2B
|
e:BCL102
|
4.3
|
15.9
|
1.0
|
|
C3B
|
e:BCL102
|
4.3
|
14.9
|
1.0
|
|
C2D
|
e:BCL102
|
4.3
|
8.2
|
1.0
|
|
CBB
|
f:BCL101
|
4.4
|
12.6
|
1.0
|
|
C2C
|
e:BCL102
|
4.4
|
17.9
|
1.0
|
|
C3A
|
e:BCL102
|
4.5
|
16.5
|
1.0
|
|
C2A
|
e:BCL102
|
4.5
|
19.0
|
1.0
|
|
C3C
|
e:BCL102
|
4.5
|
16.4
|
1.0
|
|
CG
|
E:HIS39
|
4.5
|
12.6
|
1.0
|
|
C10
|
e:BCL102
|
4.6
|
15.4
|
1.0
|
|
ND1
|
E:HIS39
|
4.7
|
16.4
|
1.0
|
|
CD1
|
e:ILE31
|
4.8
|
4.9
|
1.0
|
|
CAB
|
f:BCL101
|
4.9
|
12.9
|
1.0
|
|
C2B
|
f:BCL101
|
4.9
|
13.4
|
1.0
|
|
CBD
|
e:BCL102
|
4.9
|
11.3
|
1.0
|
|
Magnesium binding site 4 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 4 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg101
b:17.0
occ:1.00
|
MG
|
D:BCL101
|
0.0
|
17.0
|
1.0
|
|
ND
|
D:BCL101
|
2.0
|
14.9
|
1.0
|
|
NB
|
D:BCL101
|
2.1
|
17.3
|
1.0
|
|
NC
|
D:BCL101
|
2.1
|
18.6
|
1.0
|
|
NA
|
D:BCL101
|
2.2
|
15.4
|
1.0
|
|
NE2
|
D:HIS39
|
2.5
|
10.8
|
1.0
|
|
C4D
|
D:BCL101
|
3.0
|
11.9
|
1.0
|
|
C4B
|
D:BCL101
|
3.1
|
12.0
|
1.0
|
|
C1B
|
D:BCL101
|
3.1
|
13.3
|
1.0
|
|
C1C
|
D:BCL101
|
3.1
|
12.1
|
1.0
|
|
C4A
|
D:BCL101
|
3.1
|
15.3
|
1.0
|
|
C1D
|
D:BCL101
|
3.1
|
11.9
|
1.0
|
|
C4C
|
D:BCL101
|
3.2
|
11.3
|
1.0
|
|
C1A
|
D:BCL101
|
3.2
|
11.7
|
1.0
|
|
CD2
|
D:HIS39
|
3.3
|
6.5
|
1.0
|
|
CHC
|
D:BCL101
|
3.4
|
14.5
|
1.0
|
|
CHB
|
D:BCL101
|
3.4
|
10.4
|
1.0
|
|
CHA
|
D:BCL101
|
3.5
|
13.7
|
1.0
|
|
CHD
|
D:BCL101
|
3.5
|
7.2
|
1.0
|
|
CE1
|
D:HIS39
|
3.6
|
15.9
|
1.0
|
|
CBB
|
e:BCL101
|
4.2
|
7.9
|
1.0
|
|
C3D
|
D:BCL101
|
4.2
|
9.0
|
1.0
|
|
C2B
|
D:BCL101
|
4.3
|
13.5
|
1.0
|
|
C3B
|
D:BCL101
|
4.3
|
11.8
|
1.0
|
|
C2D
|
D:BCL101
|
4.3
|
7.7
|
1.0
|
|
CMB
|
e:BCL101
|
4.4
|
13.2
|
1.0
|
|
C2C
|
D:BCL101
|
4.4
|
10.2
|
1.0
|
|
C3A
|
D:BCL101
|
4.5
|
12.6
|
1.0
|
|
C2A
|
D:BCL101
|
4.5
|
11.7
|
1.0
|
|
C3C
|
D:BCL101
|
4.5
|
13.5
|
1.0
|
|
CG
|
D:HIS39
|
4.5
|
9.9
|
1.0
|
|
C10
|
D:BCL101
|
4.6
|
14.4
|
1.0
|
|
ND1
|
D:HIS39
|
4.7
|
14.6
|
1.0
|
|
CD1
|
d:ILE31
|
4.9
|
6.1
|
1.0
|
|
CAB
|
e:BCL101
|
4.9
|
10.7
|
1.0
|
|
C2B
|
e:BCL101
|
4.9
|
9.9
|
1.0
|
|
CBD
|
D:BCL101
|
4.9
|
9.4
|
1.0
|
|
Magnesium binding site 5 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 5 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Mg101
b:30.4
occ:1.00
|
MG
|
b:BCL101
|
0.0
|
30.4
|
1.0
|
|
ND
|
b:BCL101
|
2.0
|
15.7
|
1.0
|
|
NB
|
b:BCL101
|
2.1
|
11.8
|
1.0
|
|
NC
|
b:BCL101
|
2.1
|
17.2
|
1.0
|
|
NA
|
b:BCL101
|
2.2
|
16.4
|
1.0
|
|
C4D
|
b:BCL101
|
3.0
|
8.3
|
1.0
|
|
NE2
|
b:HIS32
|
3.1
|
2.5
|
1.0
|
|
C1B
|
b:BCL101
|
3.1
|
12.7
|
1.0
|
|
C4B
|
b:BCL101
|
3.1
|
14.3
|
1.0
|
|
C1C
|
b:BCL101
|
3.1
|
12.2
|
1.0
|
|
C1D
|
b:BCL101
|
3.1
|
17.4
|
1.0
|
|
C4A
|
b:BCL101
|
3.2
|
18.1
|
1.0
|
|
C4C
|
b:BCL101
|
3.2
|
10.8
|
1.0
|
|
C1A
|
b:BCL101
|
3.2
|
16.3
|
1.0
|
|
CHC
|
b:BCL101
|
3.4
|
9.5
|
1.0
|
|
CHB
|
b:BCL101
|
3.4
|
13.7
|
1.0
|
|
CHA
|
b:BCL101
|
3.5
|
14.2
|
1.0
|
|
CHD
|
b:BCL101
|
3.5
|
10.0
|
1.0
|
|
C18
|
B:SPO101
|
3.9
|
20.4
|
1.0
|
|
CBB
|
A:BCL202
|
3.9
|
19.1
|
1.0
|
|
CE1
|
b:HIS32
|
3.9
|
9.6
|
1.0
|
|
CD2
|
b:HIS32
|
4.1
|
9.8
|
1.0
|
|
C3D
|
b:BCL101
|
4.2
|
11.1
|
1.0
|
|
C2B
|
b:BCL101
|
4.3
|
12.9
|
1.0
|
|
C2D
|
b:BCL101
|
4.3
|
17.2
|
1.0
|
|
CMB
|
A:BCL202
|
4.3
|
20.1
|
1.0
|
|
C3B
|
b:BCL101
|
4.3
|
14.1
|
1.0
|
|
C2C
|
b:BCL101
|
4.4
|
17.4
|
1.0
|
|
C3A
|
b:BCL101
|
4.5
|
16.9
|
1.0
|
|
C3C
|
b:BCL101
|
4.5
|
19.5
|
1.0
|
|
C2A
|
b:BCL101
|
4.5
|
12.2
|
1.0
|
|
C20
|
B:SPO101
|
4.7
|
16.5
|
1.0
|
|
C17
|
B:SPO101
|
4.8
|
23.7
|
1.0
|
|
C2B
|
A:BCL202
|
4.9
|
20.5
|
1.0
|
|
CBD
|
b:BCL101
|
4.9
|
12.3
|
1.0
|
|
CAB
|
A:BCL202
|
5.0
|
23.9
|
1.0
|
|
CMD
|
b:BCL102
|
5.0
|
8.4
|
1.0
|
|
Magnesium binding site 6 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 6 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
b:Mg102
b:22.1
occ:1.00
|
MG
|
b:BCL102
|
0.0
|
22.1
|
1.0
|
|
ND
|
b:BCL102
|
2.0
|
12.6
|
1.0
|
|
NB
|
b:BCL102
|
2.1
|
15.7
|
1.0
|
|
NC
|
b:BCL102
|
2.1
|
17.6
|
1.0
|
|
NA
|
b:BCL102
|
2.2
|
17.1
|
1.0
|
|
NE2
|
B:HIS39
|
2.5
|
13.7
|
1.0
|
|
C4D
|
b:BCL102
|
3.0
|
10.4
|
1.0
|
|
C4B
|
b:BCL102
|
3.1
|
11.2
|
1.0
|
|
C1B
|
b:BCL102
|
3.1
|
15.4
|
1.0
|
|
C1C
|
b:BCL102
|
3.1
|
12.0
|
1.0
|
|
C4A
|
b:BCL102
|
3.1
|
15.6
|
1.0
|
|
C1D
|
b:BCL102
|
3.2
|
12.6
|
1.0
|
|
C4C
|
b:BCL102
|
3.2
|
12.3
|
1.0
|
|
C1A
|
b:BCL102
|
3.2
|
18.0
|
1.0
|
|
CD2
|
B:HIS39
|
3.3
|
6.8
|
1.0
|
|
CHC
|
b:BCL102
|
3.4
|
11.7
|
1.0
|
|
CHB
|
b:BCL102
|
3.4
|
16.0
|
1.0
|
|
CHA
|
b:BCL102
|
3.5
|
12.1
|
1.0
|
|
CHD
|
b:BCL102
|
3.5
|
12.3
|
1.0
|
|
CE1
|
B:HIS39
|
3.6
|
20.0
|
1.0
|
|
CMB
|
d:BCL101
|
4.2
|
11.2
|
1.0
|
|
C3D
|
b:BCL102
|
4.2
|
7.1
|
1.0
|
|
CBB
|
d:BCL101
|
4.3
|
6.0
|
1.0
|
|
C2B
|
b:BCL102
|
4.3
|
16.3
|
1.0
|
|
C3B
|
b:BCL102
|
4.3
|
18.9
|
1.0
|
|
C2D
|
b:BCL102
|
4.3
|
10.8
|
1.0
|
|
C2C
|
b:BCL102
|
4.4
|
16.5
|
1.0
|
|
C3A
|
b:BCL102
|
4.5
|
19.4
|
1.0
|
|
C3C
|
b:BCL102
|
4.5
|
15.2
|
1.0
|
|
C2A
|
b:BCL102
|
4.5
|
17.9
|
1.0
|
|
CG
|
B:HIS39
|
4.5
|
9.2
|
1.0
|
|
ND1
|
B:HIS39
|
4.6
|
19.7
|
1.0
|
|
C2B
|
d:BCL101
|
4.8
|
11.5
|
1.0
|
|
CAB
|
d:BCL101
|
4.9
|
11.1
|
1.0
|
|
C10
|
b:BCL102
|
4.9
|
14.7
|
1.0
|
|
CBD
|
b:BCL102
|
4.9
|
8.5
|
1.0
|
|
CMD
|
b:BCL101
|
5.0
|
10.3
|
1.0
|
|
CD1
|
b:ILE31
|
5.0
|
3.9
|
1.0
|
|
Magnesium binding site 7 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 7 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg202
b:30.0
occ:1.00
|
MG
|
A:BCL202
|
0.0
|
30.0
|
1.0
|
|
ND
|
A:BCL202
|
2.0
|
23.8
|
1.0
|
|
NB
|
A:BCL202
|
2.1
|
25.2
|
1.0
|
|
NC
|
A:BCL202
|
2.1
|
22.3
|
1.0
|
|
NA
|
A:BCL202
|
2.2
|
23.7
|
1.0
|
|
NE2
|
A:HIS39
|
2.6
|
20.6
|
1.0
|
|
C4D
|
A:BCL202
|
3.0
|
20.3
|
1.0
|
|
C4B
|
A:BCL202
|
3.1
|
16.8
|
1.0
|
|
C1B
|
A:BCL202
|
3.1
|
23.1
|
1.0
|
|
C1C
|
A:BCL202
|
3.1
|
17.2
|
1.0
|
|
C4A
|
A:BCL202
|
3.1
|
24.1
|
1.0
|
|
C1D
|
A:BCL202
|
3.2
|
22.2
|
1.0
|
|
C4C
|
A:BCL202
|
3.2
|
18.0
|
1.0
|
|
C1A
|
A:BCL202
|
3.2
|
23.7
|
1.0
|
|
CD2
|
A:HIS39
|
3.2
|
21.9
|
1.0
|
|
CHC
|
A:BCL202
|
3.4
|
13.5
|
1.0
|
|
CHB
|
A:BCL202
|
3.4
|
20.5
|
1.0
|
|
CHA
|
A:BCL202
|
3.5
|
20.6
|
1.0
|
|
CHD
|
A:BCL202
|
3.5
|
20.8
|
1.0
|
|
CE1
|
A:HIS39
|
3.7
|
28.8
|
1.0
|
|
CBB
|
b:BCL101
|
4.2
|
12.0
|
1.0
|
|
C3D
|
A:BCL202
|
4.2
|
21.5
|
1.0
|
|
C2B
|
A:BCL202
|
4.3
|
20.5
|
1.0
|
|
CMB
|
b:BCL101
|
4.3
|
15.5
|
1.0
|
|
C3B
|
A:BCL202
|
4.3
|
20.0
|
1.0
|
|
C2D
|
A:BCL202
|
4.3
|
18.0
|
1.0
|
|
C2C
|
A:BCL202
|
4.4
|
21.2
|
1.0
|
|
C2A
|
A:BCL202
|
4.4
|
25.1
|
1.0
|
|
C3A
|
A:BCL202
|
4.5
|
25.9
|
1.0
|
|
C3C
|
A:BCL202
|
4.5
|
22.8
|
1.0
|
|
CG
|
A:HIS39
|
4.5
|
29.3
|
1.0
|
|
ND1
|
A:HIS39
|
4.7
|
34.2
|
1.0
|
|
CAB
|
b:BCL101
|
4.7
|
15.6
|
1.0
|
|
C2B
|
b:BCL101
|
4.9
|
12.9
|
1.0
|
|
C12
|
A:BCL202
|
4.9
|
30.6
|
1.0
|
|
CBD
|
A:BCL202
|
4.9
|
17.0
|
1.0
|
|
CD1
|
a:ILE31
|
4.9
|
13.5
|
1.0
|
|
Magnesium binding site 8 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 8 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Mg301
b:6.6
occ:1.00
|
MG
|
L:BCL301
|
0.0
|
6.6
|
1.0
|
|
ND
|
L:BCL301
|
2.0
|
1.0
|
1.0
|
|
NB
|
L:BCL301
|
2.1
|
0.0
|
1.0
|
|
NC
|
L:BCL301
|
2.1
|
0.7
|
1.0
|
|
NA
|
L:BCL301
|
2.2
|
9.7
|
1.0
|
|
CE1
|
L:HIS173
|
2.6
|
0.0
|
1.0
|
|
C4D
|
L:BCL301
|
3.0
|
0.0
|
1.0
|
|
C4B
|
L:BCL301
|
3.1
|
0.0
|
1.0
|
|
C1B
|
L:BCL301
|
3.1
|
0.0
|
1.0
|
|
C1C
|
L:BCL301
|
3.1
|
0.0
|
1.0
|
|
C4A
|
L:BCL301
|
3.1
|
0.0
|
1.0
|
|
C1D
|
L:BCL301
|
3.1
|
0.1
|
1.0
|
|
C4C
|
L:BCL301
|
3.2
|
0.0
|
1.0
|
|
NE2
|
L:HIS173
|
3.2
|
1.2
|
1.0
|
|
C1A
|
L:BCL301
|
3.2
|
3.6
|
1.0
|
|
CHC
|
L:BCL301
|
3.4
|
0.0
|
1.0
|
|
CHB
|
L:BCL301
|
3.4
|
0.0
|
1.0
|
|
CHA
|
L:BCL301
|
3.5
|
6.3
|
1.0
|
|
CBB
|
M:BCL407
|
3.5
|
0.0
|
1.0
|
|
CHD
|
L:BCL301
|
3.5
|
0.0
|
1.0
|
|
CAB
|
M:BCL407
|
3.6
|
0.0
|
1.0
|
|
OBB
|
M:BCL407
|
3.6
|
2.3
|
1.0
|
|
ND1
|
L:HIS173
|
3.7
|
10.3
|
1.0
|
|
C3D
|
L:BCL301
|
4.2
|
0.0
|
1.0
|
|
C2B
|
L:BCL301
|
4.3
|
0.0
|
1.0
|
|
C2D
|
L:BCL301
|
4.3
|
0.0
|
1.0
|
|
C3B
|
L:BCL301
|
4.3
|
0.0
|
1.0
|
|
C3B
|
M:BCL407
|
4.4
|
0.0
|
1.0
|
|
C3A
|
L:BCL301
|
4.4
|
0.8
|
1.0
|
|
C2C
|
L:BCL301
|
4.4
|
0.3
|
1.0
|
|
C3C
|
L:BCL301
|
4.5
|
0.3
|
1.0
|
|
CD2
|
L:HIS173
|
4.5
|
15.5
|
1.0
|
|
C2A
|
L:BCL301
|
4.5
|
3.9
|
1.0
|
|
CG
|
L:HIS173
|
4.7
|
12.8
|
1.0
|
|
CD2
|
L:PHE167
|
4.7
|
0.0
|
1.0
|
|
CBD
|
L:BCL301
|
5.0
|
2.7
|
1.0
|
|
CMA
|
L:BCL301
|
5.0
|
0.0
|
1.0
|
|
Magnesium binding site 9 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 9 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg401
b:24.5
occ:1.00
|
MG
|
M:BCL401
|
0.0
|
24.5
|
1.0
|
|
ND
|
M:BCL401
|
2.0
|
17.5
|
1.0
|
|
NB
|
M:BCL401
|
2.1
|
17.2
|
1.0
|
|
NC
|
M:BCL401
|
2.1
|
19.8
|
1.0
|
|
NA
|
M:BCL401
|
2.2
|
19.9
|
1.0
|
|
NE2
|
L:HIS153
|
2.6
|
0.0
|
1.0
|
|
C4D
|
M:BCL401
|
3.0
|
12.4
|
1.0
|
|
C4B
|
M:BCL401
|
3.1
|
12.7
|
1.0
|
|
C1B
|
M:BCL401
|
3.1
|
11.8
|
1.0
|
|
C1C
|
M:BCL401
|
3.1
|
15.7
|
1.0
|
|
C1D
|
M:BCL401
|
3.1
|
13.8
|
1.0
|
|
C4A
|
M:BCL401
|
3.1
|
18.1
|
1.0
|
|
C4C
|
M:BCL401
|
3.2
|
11.1
|
1.0
|
|
C1A
|
M:BCL401
|
3.2
|
15.9
|
1.0
|
|
CD2
|
L:HIS153
|
3.3
|
1.3
|
1.0
|
|
CHC
|
M:BCL401
|
3.4
|
12.5
|
1.0
|
|
CHB
|
M:BCL401
|
3.4
|
9.8
|
1.0
|
|
CHA
|
M:BCL401
|
3.5
|
11.4
|
1.0
|
|
CHD
|
M:BCL401
|
3.5
|
7.1
|
1.0
|
|
CE1
|
L:HIS153
|
3.7
|
0.0
|
1.0
|
|
C3D
|
M:BCL401
|
4.2
|
15.5
|
1.0
|
|
C2D
|
M:BCL401
|
4.3
|
10.0
|
1.0
|
|
C2B
|
M:BCL401
|
4.3
|
14.0
|
1.0
|
|
C3B
|
M:BCL401
|
4.3
|
19.3
|
1.0
|
|
C2C
|
M:BCL401
|
4.4
|
16.5
|
1.0
|
|
C3A
|
M:BCL401
|
4.5
|
15.5
|
1.0
|
|
C3C
|
M:BCL401
|
4.5
|
20.0
|
1.0
|
|
C2A
|
M:BCL401
|
4.5
|
13.5
|
1.0
|
|
CG
|
L:HIS153
|
4.5
|
7.1
|
1.0
|
|
OBB
|
L:BPH302
|
4.6
|
15.7
|
1.0
|
|
ND1
|
L:HIS153
|
4.7
|
12.9
|
1.0
|
|
CE2
|
M:TYR208
|
4.8
|
12.7
|
1.0
|
|
CD1
|
L:LEU154
|
4.8
|
1.7
|
1.0
|
|
CBD
|
M:BCL401
|
4.9
|
11.2
|
1.0
|
|
C19
|
L:BPH302
|
4.9
|
13.1
|
1.0
|
|
Magnesium binding site 10 out
of 34 in 8b64
Go back to
Magnesium Binding Sites List in 8b64
Magnesium binding site 10 out
of 34 in the Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Rc-LH1-Pufx Photosynthetic Core Complex From Rba. Capsulatus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg405
b:15.7
occ:1.00
|
MG
|
M:BCL405
|
0.0
|
15.7
|
1.0
|
|
ND
|
M:BCL405
|
2.0
|
4.7
|
1.0
|
|
NB
|
M:BCL405
|
2.1
|
0.1
|
1.0
|
|
NC
|
M:BCL405
|
2.1
|
7.1
|
1.0
|
|
NA
|
M:BCL405
|
2.2
|
3.4
|
1.0
|
|
C4D
|
M:BCL405
|
3.0
|
5.0
|
1.0
|
|
C4B
|
M:BCL405
|
3.1
|
1.0
|
1.0
|
|
C1B
|
M:BCL405
|
3.1
|
1.7
|
1.0
|
|
C1C
|
M:BCL405
|
3.1
|
3.2
|
1.0
|
|
C4A
|
M:BCL405
|
3.1
|
9.7
|
1.0
|
|
C1D
|
M:BCL405
|
3.1
|
4.1
|
1.0
|
|
NE2
|
M:HIS180
|
3.2
|
0.0
|
1.0
|
|
C4C
|
M:BCL405
|
3.2
|
2.3
|
1.0
|
|
C1A
|
M:BCL405
|
3.2
|
7.4
|
1.0
|
|
CHC
|
M:BCL405
|
3.4
|
4.8
|
1.0
|
|
CHB
|
M:BCL405
|
3.4
|
4.7
|
1.0
|
|
CHA
|
M:BCL405
|
3.4
|
1.3
|
1.0
|
|
CHD
|
M:BCL405
|
3.5
|
0.0
|
1.0
|
|
CD2
|
M:HIS180
|
3.8
|
5.6
|
1.0
|
|
C3D
|
M:BCL405
|
4.2
|
2.8
|
1.0
|
|
C2B
|
M:BCL405
|
4.2
|
7.3
|
1.0
|
|
CE1
|
M:HIS180
|
4.3
|
3.1
|
1.0
|
|
C3B
|
M:BCL405
|
4.3
|
9.2
|
1.0
|
|
C2D
|
M:BCL405
|
4.3
|
0.5
|
1.0
|
|
OBB
|
M:BPH408
|
4.4
|
9.7
|
1.0
|
|
C2C
|
M:BCL405
|
4.4
|
8.6
|
1.0
|
|
C2A
|
M:BCL405
|
4.5
|
5.0
|
1.0
|
|
C3A
|
M:BCL405
|
4.5
|
8.2
|
1.0
|
|
C3C
|
M:BCL405
|
4.5
|
13.8
|
1.0
|
|
CBA
|
M:BCL405
|
4.7
|
0.8
|
1.0
|
|
CE2
|
L:PHE181
|
4.7
|
11.2
|
1.0
|
|
CBD
|
M:BCL405
|
4.9
|
0.0
|
1.0
|
|
Reference:
L.Bracun,
A.Yamagata,
B.M.Christianson,
M.Shirouzu,
L.N.Liu.
Cryo-Em Structure of A Monomeric Rc-LH1-Pufx Supercomplex with High-Carotenoid Content From Rhodobacter Capsulatus Structure 2023.
ISSN: ISSN 0969-2126
DOI: 10.1016/J.STR.2023.01.006
Page generated: Thu Oct 3 19:11:38 2024
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