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Magnesium in PDB 8b68: Crystal Structure of Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 in Complex with Udp-Glucose

Enzymatic activity of Crystal Structure of Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 in Complex with Udp-Glucose

All present enzymatic activity of Crystal Structure of Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 in Complex with Udp-Glucose:
2.7.7.9;

Protein crystallography data

The structure of Crystal Structure of Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 in Complex with Udp-Glucose, PDB code: 8b68 was solved by J.U.Laustsen, I.Bento, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 90.08 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 48.036, 78.433, 90.289, 90, 93.9, 90
R / Rfree (%) 17.6 / 20.4

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 in Complex with Udp-Glucose (pdb code 8b68). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 in Complex with Udp-Glucose, PDB code: 8b68:

Magnesium binding site 1 out of 1 in 8b68

Go back to Magnesium Binding Sites List in 8b68
Magnesium binding site 1 out of 1 in the Crystal Structure of Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 in Complex with Udp-Glucose


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 in Complex with Udp-Glucose within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg320

b:47.3
occ:0.72
 O A:HOH515 2.0 35.7 0.7
O A:HOH561 2.0 30.6 0.7
O2B A:UPG301 2.1 44.5 0.7
OD2 A:ASP140 2.2 30.7 0.3
O2A A:UPG301 2.4 50.8 0.7
O A:HOH534 3.0 47.1 1.0
HO6' A:UPG301 3.1 30.0 0.0
CG A:ASP140 3.1 28.3 0.3
PB A:UPG301 3.2 48.4 0.7
O3A A:UPG301 3.4 49.2 0.7
PA A:UPG301 3.4 50.9 0.7
OD1 A:ASP140 3.5 29.9 0.3
H5C1 A:UPG301 3.5 39.4 0.7
HB2 A:ASP140 3.5 26.5 0.7
O A:HOH514 3.8 47.7 1.0
O A:HOH447 3.8 42.7 1.0
O6' A:UPG301 3.8 30.0 0.7
OD2 A:ASP140 4.1 31.4 0.7
HB3 A:ASP140 4.2 26.4 0.7
O A:HOH512 4.2 26.1 0.7
O5' A:UPG301 4.2 39.9 0.7
O1B A:UPG301 4.2 44.0 0.7
CB A:ASP140 4.3 27.4 0.7
CB A:ASP140 4.3 26.6 0.3
C5C A:UPG301 4.3 40.3 0.7
HB2 A:ASP140 4.3 26.4 0.3
O3B A:UPG301 4.3 44.4 0.7
O5C A:UPG301 4.4 41.7 0.7
H5' A:UPG301 4.5 37.2 0.7
H3C A:UPG301 4.5 35.1 0.7
O1A A:UPG301 4.5 44.7 0.7
HB3 A:ASP140 4.7 26.6 0.3
C1' A:UPG301 4.7 40.4 0.7
CG A:ASP140 4.7 26.8 0.7
H1' A:UPG301 4.7 40.4 0.7
HA3 A:GLY265 4.8 23.5 1.0
C5' A:UPG301 4.8 35.7 0.7
H5C2 A:UPG301 4.8 39.8 0.7
HD13 A:LEU138 4.8 22.1 1.0
C6' A:UPG301 4.9 34.8 0.7
O A:HOH537 5.0 51.8 1.0

Reference:

A.Kumpf, A.Maier, J.U.Laustsen, C.M.Jeffries, I.Bento, D.Tischler. Crystal Structure Determination of A Highly Active Udp-Glucose Pyrophosphorylase From Thermocrispum Agreste Dsm 44070 To Be Published.
Page generated: Thu Oct 3 19:11:47 2024

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