Magnesium in PDB 8b6u: MPF2BA1 Monomer

The structure of MPF2BA1 Monomer, PDB code: 8b6u was solved by G.Marini, B.Poland, C.Leininger, N.Lukoyanova, D.Spielbauer, J.Barry, D.Altier, A.Lum, E.Scolaro, C.Perez-Ortega, N.Yalpani, G.Sandahl, T.Mabry, J.Klever, T.Nowatzki, J.Z.Zhao, A.Sethi, A.Kassa, V.Crane, A.Lu, M.E.Nelson, N.Eswar, M.Topf, H.R.Saibil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.13 / 2.13
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	127.6, 127.6, 116.12, 90, 90, 90
R / Rfree (%)	20.9 / 24.1

The binding sites of Magnesium atom in the MPF2BA1 Monomer (pdb code 8b6u). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the MPF2BA1 Monomer, PDB code: 8b6u:

Magnesium binding site 1 out of 1 in the MPF2BA1 Monomer


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of MPF2BA1 Monomer within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:22.7 occ:1.00 O A:LEU365 2.2 31.8 1.0 O A:LEU465 2.2 34.0 1.0 O A:LEU415 2.2 39.7 1.0 OD1 A:ASN466 2.3 31.6 1.0 OD1 A:ASN366 2.3 41.8 1.0 OD1 A:ASN416 2.5 39.2 1.0 HA A:ASN416 2.7 55.8 1.0 HA A:ASN466 2.9 36.0 1.0 HA A:ASN366 3.0 40.7 1.0 C A:LEU415 3.3 44.2 1.0 C A:LEU465 3.3 41.9 1.0 C A:LEU365 3.4 34.6 1.0 CG A:ASN466 3.4 32.1 1.0 CG A:ASN416 3.5 46.0 1.0 CG A:ASN366 3.5 37.7 1.0 CA A:ASN416 3.6 56.2 1.0 CA A:ASN466 3.7 34.8 1.0 CA A:ASN366 3.8 43.1 1.0 HB3 A:LEU365 3.9 32.7 1.0 N A:ASN416 3.9 54.3 1.0 N A:ASN466 3.9 40.1 1.0 N A:ASN366 3.9 38.3 1.0 HB3 A:LEU415 4.1 42.1 1.0 CB A:ASN466 4.1 32.7 1.0 CB A:ASN416 4.1 52.1 1.0 HD12 A:ILE474 4.2 32.4 1.0 CB A:ASN366 4.3 35.8 1.0 HB3 A:LEU465 4.4 37.5 1.0 HD12 A:ILE374 4.4 38.0 1.0 HD22 A:ASN366 4.4 37.3 0.0 HD22 A:ASN466 4.5 28.1 0.0 ND2 A:ASN466 4.5 27.1 1.0 ND2 A:ASN416 4.5 41.2 1.0 ND2 A:ASN366 4.5 37.4 1.0 HD22 A:ASN416 4.5 40.2 0.0 CA A:LEU365 4.6 32.4 1.0 CA A:LEU415 4.6 41.4 1.0 HB3 A:ALA419 4.6 64.9 1.0 CA A:LEU465 4.6 40.2 1.0 CB A:LEU365 4.7 31.3 1.0 HB2 A:ASN416 4.7 51.5 1.0 H A:ASN466 4.7 39.2 1.0 HB2 A:ASN466 4.7 33.1 1.0 HB3 A:ALA369 4.7 36.6 1.0 H A:ASN416 4.7 52.0 1.0 C A:ASN416 4.8 61.8 1.0 HB3 A:ASN366 4.8 37.9 1.0 H A:ASN366 4.8 38.4 1.0 HB3 A:ASN466 4.8 33.1 1.0 HB2 A:LEU465 4.8 37.5 1.0 CB A:LEU415 4.8 41.8 1.0 HB3 A:ASN416 4.8 51.6 1.0 CB A:LEU465 4.9 36.4 1.0 HA A:LEU365 4.9 32.1 1.0 HA A:LEU415 4.9 41.5 1.0 HA A:LEU465 4.9 39.2 1.0 C A:ASN466 5.0 38.5 1.0 HB2 A:ASN366 5.0 37.9 1.0

G.Marini, B.Poland, C.Leininger, N.Lukoyanova, D.Spielbauer, J.Barry, D.Altier, A.Lum, E.Scolaro, C.Perez-Ortega, N.Yalpani, G.Sandahl, T.Mabry, J.Klever, T.Nowatzki, J.Z.Zhao, A.Sethi, A.Kassa, V.Crane, A.Lu, M.E.Nelson, N.Eswar, M.Topf, H.R.Saibil. Structural Journey of An Insecticidal Pore-Forming Protein Targeting Western Corn Rootworm To Be Published.