Magnesium in PDB 8bcw: Photosystem I Assembly Intermediate of Avena Sativa

All present enzymatic activity of Photosystem I Assembly Intermediate of Avena Sativa:
1.97.1.12;

The structure of Photosystem I Assembly Intermediate of Avena Sativa also contains other interesting chemical elements:

Iron

(Fe)

12 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 88;

Binding sites:

The binding sites of Magnesium atom in the Photosystem I Assembly Intermediate of Avena Sativa (pdb code 8bcw). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 88 binding sites of Magnesium where determined in the Photosystem I Assembly Intermediate of Avena Sativa, PDB code: 8bcw:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg801 b:15.1 occ:1.00 MG A:CL0801 0.0 15.1 1.0 NB A:CL0801 1.9 15.1 1.0 NA A:CL0801 2.0 15.1 1.0 ND A:CL0801 2.0 15.1 1.0 NC A:CL0801 2.0 15.1 1.0 NE2 A:HIS675 2.2 15.9 1.0 C4D A:CL0801 2.9 15.1 1.0 C4A A:CL0801 2.9 15.1 1.0 C1C A:CL0801 3.0 15.1 1.0 C1B A:CL0801 3.0 15.1 1.0 CE1 A:HIS675 3.0 15.9 1.0 C4B A:CL0801 3.1 15.1 1.0 C1A A:CL0801 3.1 15.1 1.0 C1D A:CL0801 3.2 15.1 1.0 C4C A:CL0801 3.2 15.1 1.0 CHB A:CL0801 3.3 15.1 1.0 CD2 A:HIS675 3.4 15.9 1.0 CHA A:CL0801 3.4 15.1 1.0 CHC A:CL0801 3.4 15.1 1.0 CHD A:CL0801 3.6 15.1 1.0 CAB B:CLA801 3.8 16.8 1.0 C3B B:CLA801 4.1 16.8 1.0 C3D A:CL0801 4.2 15.1 1.0 C2B A:CL0801 4.2 15.1 1.0 ND1 A:HIS675 4.2 15.9 1.0 C3B A:CL0801 4.2 15.1 1.0 C3A A:CL0801 4.2 15.1 1.0 C2D A:CL0801 4.3 15.1 1.0 C2C A:CL0801 4.3 15.1 1.0 C2A A:CL0801 4.3 15.1 1.0 C3C A:CL0801 4.4 15.1 1.0 CG A:HIS675 4.4 15.9 1.0 C4B B:CLA801 4.4 16.8 1.0 CHC B:CLA801 4.6 16.8 1.0 CBB B:CLA801 4.7 16.8 1.0 C2B B:CLA801 4.8 16.8 1.0 CMA A:CL0801 4.9 15.1 1.0 CBD A:CL0801 4.9 15.1 1.0

Magnesium binding site 2 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg802 b:21.1 occ:1.00 MG A:CLA802 0.0 21.1 1.0 NB A:CLA802 2.0 21.1 1.0 ND A:CLA802 2.0 21.1 1.0 NA A:CLA802 2.1 21.1 1.0 NC A:CLA802 2.1 21.1 1.0 SD A:MET683 2.2 18.1 1.0 C4D A:CLA802 2.9 21.1 1.0 C4B A:CLA802 3.0 21.1 1.0 C1B A:CLA802 3.0 21.1 1.0 C4A A:CLA802 3.0 21.1 1.0 C1C A:CLA802 3.1 21.1 1.0 C1A A:CLA802 3.1 21.1 1.0 C1D A:CLA802 3.2 21.1 1.0 C4C A:CLA802 3.2 21.1 1.0 CHB A:CLA802 3.3 21.1 1.0 CHC A:CLA802 3.4 21.1 1.0 CE A:MET683 3.4 18.1 1.0 CHA A:CLA802 3.4 21.1 1.0 CG A:MET683 3.6 18.1 1.0 CHD A:CLA802 3.6 21.1 1.0 NE1 B:TRP582 3.9 17.6 1.0 C3B A:CLA802 4.2 21.1 1.0 C2B A:CLA802 4.2 21.1 1.0 C3D A:CLA802 4.2 21.1 1.0 CB A:MET683 4.2 18.1 1.0 C2D A:CLA802 4.3 21.1 1.0 C2C A:CLA802 4.3 21.1 1.0 CZ2 B:TRP582 4.3 17.6 1.0 C3A A:CLA802 4.3 21.1 1.0 C3C A:CLA802 4.4 21.1 1.0 C2A A:CLA802 4.4 21.1 1.0 CE2 B:TRP582 4.5 17.6 1.0 CBD A:CLA802 4.9 21.1 1.0

Magnesium binding site 3 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg803 b:17.0 occ:1.00 MG A:CLA803 0.0 17.0 1.0 NB A:CLA803 1.9 17.0 1.0 ND A:CLA803 2.0 17.0 1.0 NA A:CLA803 2.1 17.0 1.0 NC A:CLA803 2.1 17.0 1.0 O A:HOH990 2.1 12.0 1.0 C4D A:CLA803 2.9 17.0 1.0 C4B A:CLA803 3.0 17.0 1.0 C1B A:CLA803 3.0 17.0 1.0 C4A A:CLA803 3.0 17.0 1.0 C1C A:CLA803 3.1 17.0 1.0 C1A A:CLA803 3.1 17.0 1.0 C1D A:CLA803 3.2 17.0 1.0 C4C A:CLA803 3.2 17.0 1.0 CHB A:CLA803 3.3 17.0 1.0 CHC A:CLA803 3.4 17.0 1.0 CHA A:CLA803 3.4 17.0 1.0 CBB B:CLA802 3.5 17.8 1.0 CHD A:CLA803 3.6 17.0 1.0 C3B A:CLA803 4.1 17.0 1.0 C2B A:CLA803 4.1 17.0 1.0 C3D A:CLA803 4.2 17.0 1.0 CAB B:CLA802 4.3 17.8 1.0 C2D A:CLA803 4.3 17.0 1.0 C2C A:CLA803 4.3 17.0 1.0 C3A A:CLA803 4.3 17.0 1.0 C3C A:CLA803 4.4 17.0 1.0 C2A A:CLA803 4.4 17.0 1.0 OD1 A:ASN599 4.4 14.9 1.0 CB B:ALA658 4.6 14.8 1.0 C20 A:CL0801 4.7 15.1 1.0 C2 A:CL0801 4.8 15.1 1.0 ND2 A:ASN599 4.8 14.9 1.0 CBD A:CLA803 4.9 17.0 1.0

Magnesium binding site 4 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg804 b:36.0 occ:1.00 MG A:CLA804 0.0 36.0 1.0 NB A:CLA804 2.0 36.0 1.0 ND A:CLA804 2.0 36.0 1.0 NA A:CLA804 2.1 36.0 1.0 NC A:CLA804 2.1 36.0 1.0 NE2 A:HIS50 2.1 33.5 1.0 CE1 A:HIS50 2.8 33.5 1.0 C4D A:CLA804 2.9 36.0 1.0 C4B A:CLA804 3.0 36.0 1.0 C1B A:CLA804 3.0 36.0 1.0 C4A A:CLA804 3.0 36.0 1.0 C1C A:CLA804 3.1 36.0 1.0 C1A A:CLA804 3.1 36.0 1.0 C1D A:CLA804 3.2 36.0 1.0 C4C A:CLA804 3.2 36.0 1.0 CHB A:CLA804 3.3 36.0 1.0 CD2 A:HIS50 3.3 33.5 1.0 CHC A:CLA804 3.4 36.0 1.0 CHA A:CLA804 3.4 36.0 1.0 CHD A:CLA804 3.6 36.0 1.0 ND1 A:HIS50 4.0 33.5 1.0 C3B A:CLA804 4.2 36.0 1.0 C2B A:CLA804 4.2 36.0 1.0 C3D A:CLA804 4.2 36.0 1.0 C2D A:CLA804 4.3 36.0 1.0 CG A:HIS50 4.3 33.5 1.0 C2C A:CLA804 4.3 36.0 1.0 C2A A:CLA804 4.4 36.0 1.0 C3A A:CLA804 4.4 36.0 1.0 C3C A:CLA804 4.4 36.0 1.0 CBD A:CLA804 4.9 36.0 1.0

Magnesium binding site 5 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg805 b:35.4 occ:1.00 MG A:CLA805 0.0 35.4 1.0 NB A:CLA805 2.0 35.4 1.0 ND A:CLA805 2.0 35.4 1.0 NA A:CLA805 2.1 35.4 1.0 NC A:CLA805 2.1 35.4 1.0 NE2 A:HIS54 2.1 31.0 1.0 C4D A:CLA805 2.9 35.4 1.0 CE1 A:HIS54 2.9 31.0 1.0 C4B A:CLA805 3.0 35.4 1.0 C1B A:CLA805 3.0 35.4 1.0 C4A A:CLA805 3.0 35.4 1.0 C1C A:CLA805 3.1 35.4 1.0 C1A A:CLA805 3.1 35.4 1.0 C1D A:CLA805 3.2 35.4 1.0 C4C A:CLA805 3.2 35.4 1.0 CD2 A:HIS54 3.2 31.0 1.0 CHB A:CLA805 3.3 35.4 1.0 CHC A:CLA805 3.4 35.4 1.0 CHA A:CLA805 3.4 35.4 1.0 CHD A:CLA805 3.6 35.4 1.0 C7 A:CLA812 4.1 38.5 1.0 ND1 A:HIS54 4.1 31.0 1.0 C3B A:CLA805 4.2 35.4 1.0 C2B A:CLA805 4.2 35.4 1.0 C3D A:CLA805 4.2 35.4 1.0 C2D A:CLA805 4.3 35.4 1.0 CG A:HIS54 4.3 31.0 1.0 C2C A:CLA805 4.3 35.4 1.0 C3A A:CLA805 4.4 35.4 1.0 C3C A:CLA805 4.4 35.4 1.0 C2A A:CLA805 4.4 35.4 1.0 C5 A:CLA812 4.5 38.5 1.0 C10 A:CLA812 4.5 38.5 1.0 C6 A:CLA812 4.8 38.5 1.0 C8 A:CLA812 4.9 38.5 1.0 CBD A:CLA805 4.9 35.4 1.0 CB A:ALA53 5.0 33.9 1.0

Magnesium binding site 6 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg806 b:30.2 occ:1.00 MG A:CLA806 0.0 30.2 1.0 NB A:CLA806 2.0 30.2 1.0 ND A:CLA806 2.0 30.2 1.0 NA A:CLA806 2.1 30.2 1.0 NC A:CLA806 2.1 30.2 1.0 NE2 A:HIS74 2.1 31.0 1.0 CD2 A:HIS74 2.8 31.0 1.0 C4D A:CLA806 2.9 30.2 1.0 C4B A:CLA806 3.0 30.2 1.0 C1B A:CLA806 3.0 30.2 1.0 C4A A:CLA806 3.0 30.2 1.0 C1C A:CLA806 3.1 30.2 1.0 C1A A:CLA806 3.1 30.2 1.0 C1D A:CLA806 3.2 30.2 1.0 C4C A:CLA806 3.2 30.2 1.0 CE1 A:HIS74 3.3 31.0 1.0 CHB A:CLA806 3.3 30.2 1.0 CHC A:CLA806 3.4 30.2 1.0 CHA A:CLA806 3.4 30.2 1.0 CMB A:CLA831 3.5 25.2 1.0 CHD A:CLA806 3.6 30.2 1.0 CG A:HIS74 4.1 31.0 1.0 C3B A:CLA806 4.2 30.2 1.0 C2B A:CLA806 4.2 30.2 1.0 C3D A:CLA806 4.2 30.2 1.0 ND1 A:HIS74 4.2 31.0 1.0 C2D A:CLA806 4.3 30.2 1.0 C2C A:CLA806 4.3 30.2 1.0 CG1 A:VAL70 4.3 32.8 1.0 C3A A:CLA806 4.4 30.2 1.0 C2A A:CLA806 4.4 30.2 1.0 C3C A:CLA806 4.4 30.2 1.0 CBD A:CLA806 4.9 30.2 1.0 C2B A:CLA831 4.9 25.2 1.0

Magnesium binding site 7 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg807 b:27.1 occ:1.00 MG A:CLA807 0.0 27.1 1.0 NB A:CLA807 2.0 27.1 1.0 ND A:CLA807 2.0 27.1 1.0 NA A:CLA807 2.1 27.1 1.0 NC A:CLA807 2.1 27.1 1.0 OE1 A:GLN77 2.1 30.2 1.0 C4D A:CLA807 2.9 27.1 1.0 C4B A:CLA807 3.0 27.1 1.0 C1B A:CLA807 3.0 27.1 1.0 C4A A:CLA807 3.0 27.1 1.0 C1C A:CLA807 3.1 27.1 1.0 C1A A:CLA807 3.1 27.1 1.0 CD A:GLN77 3.1 30.2 1.0 C1D A:CLA807 3.2 27.1 1.0 C4C A:CLA807 3.2 27.1 1.0 CHB A:CLA807 3.3 27.1 1.0 CHC A:CLA807 3.4 27.1 1.0 CHA A:CLA807 3.4 27.1 1.0 NE2 A:GLN77 3.5 30.2 1.0 CHD A:CLA807 3.6 27.1 1.0 C16 A:CLA807 3.9 27.1 1.0 C3B A:CLA807 4.2 27.1 1.0 C2B A:CLA807 4.2 27.1 1.0 C3D A:CLA807 4.2 27.1 1.0 C17 A:CLA807 4.2 27.1 1.0 C2D A:CLA807 4.3 27.1 1.0 C2C A:CLA807 4.3 27.1 1.0 C3A A:CLA807 4.4 27.1 1.0 CG A:GLN77 4.4 30.2 1.0 C2A A:CLA807 4.4 27.1 1.0 C3C A:CLA807 4.4 27.1 1.0 C18 A:CLA807 4.7 27.1 1.0 CMA A:CLA806 4.8 30.2 1.0 CBD A:CLA807 4.9 27.1 1.0

Magnesium binding site 8 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg808 b:32.1 occ:1.00 MG A:CLA808 0.0 32.1 1.0 NB A:CLA808 2.0 32.1 1.0 ND A:CLA808 2.0 32.1 1.0 NA A:CLA808 2.1 32.1 1.0 NC A:CLA808 2.1 32.1 1.0 NE2 A:HIS91 2.2 32.5 1.0 C4D A:CLA808 2.9 32.1 1.0 CE1 A:HIS91 2.9 32.5 1.0 C4B A:CLA808 3.0 32.1 1.0 C1B A:CLA808 3.0 32.1 1.0 C4A A:CLA808 3.0 32.1 1.0 C1C A:CLA808 3.1 32.1 1.0 C1A A:CLA808 3.1 32.1 1.0 C1D A:CLA808 3.2 32.1 1.0 C4C A:CLA808 3.2 32.1 1.0 CD2 A:HIS91 3.3 32.5 1.0 CHB A:CLA808 3.3 32.1 1.0 CHC A:CLA808 3.4 32.1 1.0 CHA A:CLA808 3.4 32.1 1.0 CHD A:CLA808 3.6 32.1 1.0 ND1 A:HIS91 4.1 32.5 1.0 C3B A:CLA808 4.2 32.1 1.0 C2B A:CLA808 4.2 32.1 1.0 C3D A:CLA808 4.2 32.1 1.0 C2D A:CLA808 4.3 32.1 1.0 C2C A:CLA808 4.3 32.1 1.0 CG A:HIS91 4.3 32.5 1.0 C3A A:CLA808 4.4 32.1 1.0 C3C A:CLA808 4.4 32.1 1.0 C2A A:CLA808 4.4 32.1 1.0 CBD A:CLA808 4.9 32.1 1.0

Magnesium binding site 9 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg809 b:29.1 occ:1.00 MG A:CLA809 0.0 29.1 1.0 NB A:CLA809 2.0 29.1 1.0 ND A:CLA809 2.0 29.1 1.0 NA A:CLA809 2.1 29.1 1.0 NC A:CLA809 2.1 29.1 1.0 OE1 A:GLN113 2.1 32.6 1.0 C4D A:CLA809 2.9 29.1 1.0 C4B A:CLA809 3.0 29.1 1.0 C1B A:CLA809 3.0 29.1 1.0 C4A A:CLA809 3.0 29.1 1.0 C1C A:CLA809 3.1 29.1 1.0 C1A A:CLA809 3.1 29.1 1.0 CD A:GLN113 3.1 32.6 1.0 C1D A:CLA809 3.2 29.1 1.0 C4C A:CLA809 3.2 29.1 1.0 CHB A:CLA809 3.3 29.1 1.0 CHC A:CLA809 3.4 29.1 1.0 CHA A:CLA809 3.4 29.1 1.0 NE2 A:GLN113 3.4 32.6 1.0 CHD A:CLA809 3.6 29.1 1.0 C5 A:CLA829 3.9 24.2 1.0 C3B A:CLA809 4.2 29.1 1.0 C2B A:CLA809 4.2 29.1 1.0 C3D A:CLA809 4.2 29.1 1.0 C2 A:CLA829 4.2 24.2 1.0 C2D A:CLA809 4.3 29.1 1.0 C2C A:CLA809 4.3 29.1 1.0 C3A A:CLA809 4.3 29.1 1.0 C2A A:CLA809 4.4 29.1 1.0 C3C A:CLA809 4.4 29.1 1.0 CG A:GLN113 4.5 32.6 1.0 C7 A:CLA829 4.5 24.2 1.0 C6 A:CLA829 4.5 24.2 1.0 C3 A:CLA829 4.6 24.2 1.0 CBD A:CLA809 4.9 29.1 1.0 CB A:GLN113 4.9 32.6 1.0

Magnesium binding site 10 out of 88 in the Photosystem I Assembly Intermediate of Avena Sativa


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Photosystem I Assembly Intermediate of Avena Sativa within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg810 b:33.0 occ:1.00 MG A:CLA810 0.0 33.0 1.0 NB A:CLA810 2.0 33.0 1.0 ND A:CLA810 2.0 33.0 1.0 NA A:CLA810 2.1 33.0 1.0 NC A:CLA810 2.1 33.0 1.0 OE1 A:GLN121 2.1 35.0 1.0 C4D A:CLA810 2.9 33.0 1.0 C4B A:CLA810 3.0 33.0 1.0 C1B A:CLA810 3.0 33.0 1.0 C4A A:CLA810 3.0 33.0 1.0 C1C A:CLA810 3.1 33.0 1.0 C1A A:CLA810 3.1 33.0 1.0 C1D A:CLA810 3.2 33.0 1.0 CD A:GLN121 3.2 35.0 1.0 C4C A:CLA810 3.2 33.0 1.0 CHB A:CLA810 3.3 33.0 1.0 CHC A:CLA810 3.4 33.0 1.0 CHA A:CLA810 3.4 33.0 1.0 CHD A:CLA810 3.6 33.0 1.0 NE2 A:GLN121 3.7 35.0 1.0 C3B A:CLA810 4.2 33.0 1.0 C2B A:CLA810 4.2 33.0 1.0 C3D A:CLA810 4.2 33.0 1.0 C2D A:CLA810 4.3 33.0 1.0 C2C A:CLA810 4.3 33.0 1.0 C3A A:CLA810 4.4 33.0 1.0 C3C A:CLA810 4.4 33.0 1.0 C2A A:CLA810 4.4 33.0 1.0 CG A:GLN121 4.5 35.0 1.0 CB A:GLN121 4.7 35.0 1.0 CBD A:CLA810 4.9 33.0 1.0

A.Naschberger, A.Amunts, N.Nelson. Photosystem I Assembly Intermediate of Avena Sativa To Be Published.