Magnesium in PDB 8bd5: CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex

Other elements in 8bd5:

The structure of CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex (pdb code 8bd5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex, PDB code: 8bd5:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in 8bd5

Go back to Magnesium Binding Sites List in 8bd5
Magnesium binding site 1 out of 7 in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Mg302

b:138.7
occ:1.00
OG1 E:THR67 2.1 132.1 1.0
O1B E:ATP301 2.1 136.9 1.0
O2A E:ATP301 2.2 136.9 1.0
O1G E:ATP301 2.2 136.9 1.0
PG E:ATP301 2.6 136.9 1.0
PB E:ATP301 2.7 136.9 1.0
O3B E:ATP301 2.7 136.9 1.0
CB E:THR67 2.8 132.1 1.0
O2G E:ATP301 2.8 136.9 1.0
PA E:ATP301 3.0 136.9 1.0
O3A E:ATP301 3.0 136.9 1.0
O1A E:ATP301 3.5 136.9 1.0
N E:THR67 3.5 132.1 1.0
CA E:THR67 3.7 132.1 1.0
OE2 E:GLU145 3.8 120.6 1.0
CG2 E:THR67 4.0 132.1 1.0
NZ E:LYS66 4.1 136.0 1.0
O3G E:ATP301 4.1 136.9 1.0
O2B E:ATP301 4.2 136.9 1.0
O5' E:ATP301 4.4 136.9 1.0
OE2 F:GLU162 4.6 112.6 1.0
N E:LYS66 4.7 136.0 1.0
C E:LYS66 4.7 136.0 1.0
OD2 E:ASP144 4.8 123.0 1.0
NH2 E:ARG63 4.8 133.4 1.0
NH2 F:ARG189 4.9 121.0 1.0
OD1 E:ASP144 4.9 123.0 1.0
C E:THR67 4.9 132.1 1.0

Magnesium binding site 2 out of 7 in 8bd5

Go back to Magnesium Binding Sites List in 8bd5
Magnesium binding site 2 out of 7 in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Mg302

b:128.1
occ:1.00
O1B F:ATP301 2.2 133.1 1.0
O3B F:ATP301 2.3 133.1 1.0
O1G F:ATP301 2.4 133.1 1.0
PG F:ATP301 2.6 133.1 1.0
PB F:ATP301 2.7 133.1 1.0
O2G F:ATP301 2.8 133.1 1.0
OE2 F:GLU145 3.0 111.3 1.0
CG2 F:THR67 3.0 120.5 1.0
CD F:GLU145 3.8 111.3 1.0
NH2 G:ARG189 3.8 151.5 1.0
O3A F:ATP301 3.8 133.1 1.0
O2B F:ATP301 3.9 133.1 1.0
OG1 F:THR67 3.9 120.5 1.0
O3G F:ATP301 4.1 133.1 1.0
CB F:THR67 4.1 120.5 1.0
O2A F:ATP301 4.2 133.1 1.0
OE1 F:GLU145 4.3 111.3 1.0
OD1 F:ASP144 4.3 107.5 1.0
O F:GLY65 4.4 125.4 1.0
OD2 F:ASP144 4.4 107.5 1.0
PA F:ATP301 4.7 133.1 1.0
CG F:GLU145 4.8 111.3 1.0
CG F:ASP144 4.8 107.5 1.0
N F:THR67 5.0 120.5 1.0

Magnesium binding site 3 out of 7 in 8bd5

Go back to Magnesium Binding Sites List in 8bd5
Magnesium binding site 3 out of 7 in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Mg302

b:234.2
occ:1.00
O1B G:ATP301 2.1 236.8 1.0
OG1 G:THR67 2.2 220.2 1.0
O3B G:ATP301 2.2 236.8 1.0
O2A G:ATP301 2.3 236.8 1.0
PB G:ATP301 2.4 236.8 1.0
O1G G:ATP301 2.5 236.8 1.0
PG G:ATP301 2.8 236.8 1.0
O3A G:ATP301 2.9 236.8 1.0
PA G:ATP301 3.1 236.8 1.0
CB G:THR67 3.2 220.2 1.0
O2G G:ATP301 3.5 236.8 1.0
N G:THR67 3.8 220.2 1.0
O2B G:ATP301 3.9 236.8 1.0
O1A G:ATP301 3.9 236.8 1.0
OE2 H:GLU162 4.0 240.1 1.0
CA G:THR67 4.1 220.2 1.0
O3G G:ATP301 4.1 236.8 1.0
CG2 G:THR67 4.3 220.2 1.0
NH2 G:ARG63 4.4 241.0 1.0
O5' G:ATP301 4.4 236.8 1.0
NH2 H:ARG189 4.5 252.3 1.0
C5' G:ATP301 4.7 236.8 1.0
CD H:GLU162 4.7 240.1 1.0
N G:LYS66 4.9 219.0 1.0
NE G:ARG63 5.0 241.0 1.0
C G:LYS66 5.0 219.0 1.0

Magnesium binding site 4 out of 7 in 8bd5

Go back to Magnesium Binding Sites List in 8bd5
Magnesium binding site 4 out of 7 in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Mg302

b:305.9
occ:1.00
OG1 H:THR67 2.1 294.0 1.0
O1G H:ATP301 2.2 311.1 1.0
O1B H:ATP301 2.2 311.1 1.0
O2A H:ATP301 2.2 311.1 1.0
PB H:ATP301 2.6 311.1 1.0
O3B H:ATP301 2.6 311.1 1.0
PG H:ATP301 2.7 311.1 1.0
PA H:ATP301 2.7 311.1 1.0
O3A H:ATP301 2.7 311.1 1.0
CB H:THR67 2.9 294.0 1.0
O1A H:ATP301 3.0 311.1 1.0
O2G H:ATP301 3.2 311.1 1.0
N H:THR67 3.5 294.0 1.0
CA H:THR67 3.8 294.0 1.0
CG2 H:THR67 4.1 294.0 1.0
O2B H:ATP301 4.1 311.1 1.0
O3G H:ATP301 4.1 311.1 1.0
O5' H:ATP301 4.2 311.1 1.0
N H:LYS66 4.7 295.6 1.0
NH2 I:ARG189 4.7 287.2 1.0
C H:LYS66 4.7 295.6 1.0
OE2 I:GLU162 4.8 281.2 1.0

Magnesium binding site 5 out of 7 in 8bd5

Go back to Magnesium Binding Sites List in 8bd5
Magnesium binding site 5 out of 7 in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Mg302

b:329.5
occ:1.00
O1B I:ATP301 2.1 329.6 1.0
O3B I:ATP301 2.2 329.6 1.0
O2A I:ATP301 2.2 329.6 1.0
O2G I:ATP301 2.4 329.6 1.0
PB I:ATP301 2.4 329.6 1.0
PG I:ATP301 2.5 329.6 1.0
OG1 I:THR67 2.7 312.3 1.0
O1G I:ATP301 2.9 329.6 1.0
O3A I:ATP301 2.9 329.6 1.0
PA I:ATP301 3.1 329.6 1.0
CB I:THR67 3.5 312.3 1.0
NH2 I:ARG63 3.8 327.6 1.0
O2B I:ATP301 3.9 329.6 1.0
N I:THR67 4.0 312.3 1.0
O3G I:ATP301 4.0 329.6 1.0
O1A I:ATP301 4.1 329.6 1.0
O5' I:ATP301 4.2 329.6 1.0
CA I:THR67 4.4 312.3 1.0
CG2 I:THR67 4.6 312.3 1.0
CZ I:ARG63 4.9 327.6 1.0
CB I:LYS66 5.0 311.1 1.0

Magnesium binding site 6 out of 7 in 8bd5

Go back to Magnesium Binding Sites List in 8bd5
Magnesium binding site 6 out of 7 in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Mg302

b:335.9
occ:1.00
O1B J:ATP301 2.0 336.2 1.0
OG1 J:THR67 2.0 329.3 1.0
O2A J:ATP301 2.4 336.2 1.0
PB J:ATP301 2.5 336.2 1.0
O3A J:ATP301 2.6 336.2 1.0
PA J:ATP301 2.6 336.2 1.0
O3B J:ATP301 2.8 336.2 1.0
O1A J:ATP301 2.8 336.2 1.0
CB J:THR67 3.0 329.3 1.0
N J:THR67 3.5 329.3 1.0
CA J:THR67 3.8 329.3 1.0
PG J:ATP301 3.8 336.2 1.0
O2G J:ATP301 3.9 336.2 1.0
O2B J:ATP301 4.0 336.2 1.0
O5' J:ATP301 4.2 336.2 1.0
O1G J:ATP301 4.2 336.2 1.0
CG2 J:THR67 4.2 329.3 1.0
NH2 J:ARG63 4.4 335.6 1.0
OD1 J:ASP144 4.5 308.8 1.0
C J:LYS66 4.6 332.3 1.0
N J:LYS66 4.6 332.3 1.0
CB J:LYS66 4.7 332.3 1.0
OD2 J:ASP144 4.8 308.8 1.0
CA J:LYS66 4.9 332.3 1.0

Magnesium binding site 7 out of 7 in 8bd5

Go back to Magnesium Binding Sites List in 8bd5
Magnesium binding site 7 out of 7 in the CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of CAS12K-Sgrna-Dsdna-S15-Tniq-Tnsc Transposon Recruitment Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Mg302

b:312.1
occ:1.00
O1B K:ATP301 2.0 314.2 1.0
O1G K:ATP301 2.0 314.2 1.0
PG K:ATP301 2.4 314.2 1.0
O3B K:ATP301 2.5 314.2 1.0
OG1 K:THR67 2.6 300.4 1.0
O2G K:ATP301 2.6 314.2 1.0
PB K:ATP301 2.6 314.2 1.0
O3A K:ATP301 3.3 314.2 1.0
CB K:THR67 3.5 300.4 1.0
O2A K:ATP301 3.6 314.2 1.0
O3G K:ATP301 3.9 314.2 1.0
O2B K:ATP301 4.0 314.2 1.0
PA K:ATP301 4.0 314.2 1.0
N K:THR67 4.3 300.4 1.0
CA K:THR67 4.5 300.4 1.0
CG2 K:THR67 4.6 300.4 1.0
O1A K:ATP301 4.6 314.2 1.0
OD1 K:ASP144 4.6 268.8 1.0

Reference:

M.Schmitz, I.Querques, S.Oberli, C.Chanez, M.Jinek. Structural Basis For the Assembly of the Type V Crispr-Associated Transposon Complex. Cell V. 185 4999 2022.
ISSN: ISSN 1097-4172
PubMed: 36435179
DOI: 10.1016/J.CELL.2022.11.009
Page generated: Fri Apr 7 06:33:42 2023

Last articles

Mg in 8AV7
Mg in 8AV8
Mg in 8AV4
Mg in 8AV3
Mg in 8AV0
Mg in 8AV5
Mg in 8AUY
Mg in 8AU2
Mg in 8ASN
Mg in 8AUS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy