Magnesium in PDB 8bdb: Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
Enzymatic activity of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
All present enzymatic activity of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis:
4.1.1.39;
Protein crystallography data
The structure of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis, PDB code: 8bdb
was solved by
I.Andersson,
L.H.Gunn,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.60 /
1.70
|
|
Space group
|
C 1 2 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
210.328,
131.925,
196.319,
90,
94.75,
90
|
|
R / Rfree (%)
|
15.8 /
17.8
|
Magnesium Binding Sites:
The binding sites of Magnesium atom in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
(pdb code 8bdb). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the
Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis, PDB code: 8bdb:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Magnesium binding site 1 out
of 8 in 8bdb
Go back to
Magnesium Binding Sites List in 8bdb
Magnesium binding site 1 out
of 8 in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg501
b:16.7
occ:1.00
|
OD1
|
A:ASP207
|
1.9
|
14.4
|
1.0
|
|
OE1
|
A:GLU208
|
2.0
|
14.4
|
1.0
|
|
OQ1
|
A:KCX205
|
2.0
|
15.5
|
1.0
|
|
O6
|
A:CAP502
|
2.1
|
16.2
|
1.0
|
|
O3
|
A:CAP502
|
2.2
|
16.5
|
1.0
|
|
O2
|
A:CAP502
|
2.3
|
16.2
|
1.0
|
|
C
|
A:CAP502
|
2.9
|
16.3
|
1.0
|
|
C2
|
A:CAP502
|
2.9
|
16.4
|
1.0
|
|
CD
|
A:GLU208
|
3.1
|
14.3
|
1.0
|
|
C3
|
A:CAP502
|
3.1
|
16.4
|
1.0
|
|
CX
|
A:KCX205
|
3.1
|
15.7
|
1.0
|
|
CG
|
A:ASP207
|
3.1
|
15.0
|
1.0
|
|
OQ2
|
A:KCX205
|
3.4
|
16.0
|
1.0
|
|
OE2
|
A:GLU208
|
3.5
|
14.8
|
1.0
|
|
NZ
|
A:LYS181
|
3.6
|
16.5
|
1.0
|
|
OD2
|
A:ASP207
|
3.8
|
15.3
|
1.0
|
|
N
|
A:GLU208
|
3.8
|
13.6
|
1.0
|
|
NZ
|
A:LYS179
|
3.9
|
16.4
|
1.0
|
|
NE2
|
A:HIS297
|
4.0
|
14.1
|
1.0
|
|
CG2
|
A:THR177
|
4.0
|
15.1
|
1.0
|
|
O7
|
A:CAP502
|
4.1
|
15.7
|
1.0
|
|
CA
|
A:ASP207
|
4.2
|
14.0
|
1.0
|
|
CB
|
A:ASP207
|
4.2
|
14.4
|
1.0
|
|
NZ
|
A:KCX205
|
4.3
|
15.1
|
1.0
|
|
CG
|
A:GLU208
|
4.3
|
14.0
|
1.0
|
|
C4
|
A:CAP502
|
4.4
|
16.4
|
1.0
|
|
C1
|
A:CAP502
|
4.4
|
16.7
|
1.0
|
|
OG1
|
A:THR177
|
4.4
|
15.7
|
1.0
|
|
CD2
|
A:HIS297
|
4.4
|
14.0
|
1.0
|
|
CB
|
A:GLU208
|
4.5
|
13.7
|
1.0
|
|
C
|
A:ASP207
|
4.6
|
13.8
|
1.0
|
|
CB
|
A:THR177
|
4.7
|
15.2
|
1.0
|
|
CA
|
A:GLU208
|
4.8
|
13.6
|
1.0
|
|
C5
|
A:CAP502
|
4.9
|
16.3
|
1.0
|
|
O1
|
A:CAP502
|
4.9
|
16.6
|
1.0
|
|
CE1
|
A:HIS297
|
4.9
|
14.1
|
1.0
|
|
Magnesium binding site 2 out
of 8 in 8bdb
Go back to
Magnesium Binding Sites List in 8bdb
Magnesium binding site 2 out
of 8 in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg501
b:15.5
occ:1.00
|
OD1
|
C:ASP207
|
1.9
|
14.6
|
1.0
|
|
OQ2
|
C:KCX205
|
2.0
|
12.7
|
1.0
|
|
OE1
|
C:GLU208
|
2.1
|
14.5
|
1.0
|
|
O7
|
C:CAP502
|
2.1
|
14.9
|
1.0
|
|
O3
|
C:CAP502
|
2.2
|
15.7
|
1.0
|
|
O2
|
C:CAP502
|
2.4
|
15.8
|
1.0
|
|
C
|
C:CAP502
|
2.9
|
15.5
|
1.0
|
|
C2
|
C:CAP502
|
2.9
|
15.4
|
1.0
|
|
CX
|
C:KCX205
|
3.1
|
13.1
|
1.0
|
|
CD
|
C:GLU208
|
3.1
|
14.5
|
1.0
|
|
C3
|
C:CAP502
|
3.1
|
15.7
|
1.0
|
|
CG
|
C:ASP207
|
3.1
|
14.9
|
1.0
|
|
OQ1
|
C:KCX205
|
3.3
|
13.0
|
1.0
|
|
OE2
|
C:GLU208
|
3.5
|
15.9
|
1.0
|
|
NZ
|
C:LYS181
|
3.7
|
16.1
|
1.0
|
|
N
|
C:GLU208
|
3.8
|
13.7
|
1.0
|
|
OD2
|
C:ASP207
|
3.8
|
16.0
|
1.0
|
|
NZ
|
C:LYS179
|
3.9
|
15.6
|
1.0
|
|
CG2
|
C:THR177
|
3.9
|
15.0
|
1.0
|
|
NE2
|
C:HIS297
|
4.0
|
13.3
|
1.0
|
|
O6
|
C:CAP502
|
4.1
|
14.8
|
1.0
|
|
CA
|
C:ASP207
|
4.2
|
14.0
|
1.0
|
|
CB
|
C:ASP207
|
4.2
|
14.3
|
1.0
|
|
NZ
|
C:KCX205
|
4.2
|
12.9
|
1.0
|
|
OG1
|
C:THR177
|
4.3
|
14.4
|
1.0
|
|
CG
|
C:GLU208
|
4.4
|
14.2
|
1.0
|
|
C4
|
C:CAP502
|
4.4
|
15.7
|
1.0
|
|
C1
|
C:CAP502
|
4.4
|
15.7
|
1.0
|
|
CD2
|
C:HIS297
|
4.5
|
13.4
|
1.0
|
|
C
|
C:ASP207
|
4.5
|
13.6
|
1.0
|
|
CB
|
C:GLU208
|
4.5
|
14.0
|
1.0
|
|
CB
|
C:THR177
|
4.7
|
14.9
|
1.0
|
|
CA
|
C:GLU208
|
4.8
|
13.8
|
1.0
|
|
C5
|
C:CAP502
|
4.9
|
15.7
|
1.0
|
|
O1
|
C:CAP502
|
4.9
|
15.5
|
1.0
|
|
CE1
|
C:HIS297
|
5.0
|
13.6
|
1.0
|
|
Magnesium binding site 3 out
of 8 in 8bdb
Go back to
Magnesium Binding Sites List in 8bdb
Magnesium binding site 3 out
of 8 in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg501
b:15.0
occ:1.00
|
OD1
|
E:ASP207
|
2.0
|
14.9
|
1.0
|
|
OQ2
|
E:KCX205
|
2.0
|
13.2
|
1.0
|
|
OE1
|
E:GLU208
|
2.1
|
13.5
|
1.0
|
|
O6
|
E:CAP502
|
2.1
|
15.5
|
1.0
|
|
O3
|
E:CAP502
|
2.2
|
15.7
|
1.0
|
|
O2
|
E:CAP502
|
2.3
|
15.2
|
1.0
|
|
C
|
E:CAP502
|
2.9
|
16.1
|
1.0
|
|
C2
|
E:CAP502
|
2.9
|
15.8
|
1.0
|
|
CX
|
E:KCX205
|
3.1
|
13.5
|
1.0
|
|
C3
|
E:CAP502
|
3.1
|
15.8
|
1.0
|
|
CD
|
E:GLU208
|
3.1
|
13.8
|
1.0
|
|
CG
|
E:ASP207
|
3.1
|
14.8
|
1.0
|
|
OQ1
|
E:KCX205
|
3.3
|
13.6
|
1.0
|
|
OE2
|
E:GLU208
|
3.6
|
14.9
|
1.0
|
|
NZ
|
E:LYS181
|
3.7
|
14.7
|
1.0
|
|
OD2
|
E:ASP207
|
3.8
|
15.0
|
1.0
|
|
N
|
E:GLU208
|
3.8
|
13.3
|
1.0
|
|
CG2
|
E:THR177
|
4.0
|
14.4
|
1.0
|
|
NE2
|
E:HIS297
|
4.0
|
13.9
|
1.0
|
|
NZ
|
E:LYS179
|
4.0
|
16.0
|
1.0
|
|
O7
|
E:CAP502
|
4.1
|
16.2
|
1.0
|
|
NZ
|
E:KCX205
|
4.2
|
13.3
|
1.0
|
|
CA
|
E:ASP207
|
4.2
|
13.2
|
1.0
|
|
CB
|
E:ASP207
|
4.2
|
13.9
|
1.0
|
|
C4
|
E:CAP502
|
4.3
|
15.8
|
1.0
|
|
OG1
|
E:THR177
|
4.3
|
14.4
|
1.0
|
|
CG
|
E:GLU208
|
4.4
|
13.8
|
1.0
|
|
C1
|
E:CAP502
|
4.4
|
15.6
|
1.0
|
|
CD2
|
E:HIS297
|
4.5
|
13.9
|
1.0
|
|
CB
|
E:GLU208
|
4.5
|
13.6
|
1.0
|
|
C
|
E:ASP207
|
4.6
|
13.2
|
1.0
|
|
CB
|
E:THR177
|
4.7
|
14.5
|
1.0
|
|
CA
|
E:GLU208
|
4.8
|
13.4
|
1.0
|
|
C5
|
E:CAP502
|
4.8
|
15.3
|
1.0
|
|
O1
|
E:CAP502
|
4.9
|
15.7
|
1.0
|
|
Magnesium binding site 4 out
of 8 in 8bdb
Go back to
Magnesium Binding Sites List in 8bdb
Magnesium binding site 4 out
of 8 in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg501
b:14.1
occ:1.00
|
OD1
|
G:ASP207
|
1.9
|
12.6
|
1.0
|
|
OQ1
|
G:KCX205
|
2.0
|
12.8
|
1.0
|
|
OE1
|
G:GLU208
|
2.1
|
13.3
|
1.0
|
|
O7
|
G:CAP502
|
2.1
|
13.4
|
1.0
|
|
O3
|
G:CAP502
|
2.2
|
12.4
|
1.0
|
|
O2
|
G:CAP502
|
2.3
|
12.9
|
1.0
|
|
C
|
G:CAP502
|
2.9
|
13.4
|
1.0
|
|
C2
|
G:CAP502
|
2.9
|
13.1
|
1.0
|
|
CX
|
G:KCX205
|
3.1
|
12.8
|
1.0
|
|
C3
|
G:CAP502
|
3.1
|
12.9
|
1.0
|
|
CD
|
G:GLU208
|
3.1
|
13.2
|
1.0
|
|
CG
|
G:ASP207
|
3.2
|
12.7
|
1.0
|
|
OQ2
|
G:KCX205
|
3.3
|
13.2
|
1.0
|
|
OE2
|
G:GLU208
|
3.6
|
14.2
|
1.0
|
|
NZ
|
G:LYS181
|
3.7
|
15.7
|
1.0
|
|
OD2
|
G:ASP207
|
3.8
|
13.4
|
1.0
|
|
N
|
G:GLU208
|
3.9
|
12.1
|
1.0
|
|
NE2
|
G:HIS297
|
3.9
|
11.8
|
1.0
|
|
NZ
|
G:LYS179
|
4.0
|
13.0
|
1.0
|
|
CG2
|
G:THR177
|
4.0
|
12.2
|
1.0
|
|
O6
|
G:CAP502
|
4.1
|
13.1
|
1.0
|
|
CA
|
G:ASP207
|
4.2
|
11.9
|
1.0
|
|
NZ
|
G:KCX205
|
4.2
|
12.9
|
1.0
|
|
CB
|
G:ASP207
|
4.2
|
12.2
|
1.0
|
|
OG1
|
G:THR177
|
4.3
|
12.4
|
1.0
|
|
C4
|
G:CAP502
|
4.3
|
13.1
|
1.0
|
|
CG
|
G:GLU208
|
4.4
|
12.9
|
1.0
|
|
C1
|
G:CAP502
|
4.4
|
13.1
|
1.0
|
|
CD2
|
G:HIS297
|
4.4
|
11.5
|
1.0
|
|
CB
|
G:GLU208
|
4.6
|
12.4
|
1.0
|
|
C
|
G:ASP207
|
4.6
|
11.9
|
1.0
|
|
CB
|
G:THR177
|
4.7
|
12.4
|
1.0
|
|
C5
|
G:CAP502
|
4.8
|
12.9
|
1.0
|
|
CA
|
G:GLU208
|
4.8
|
12.2
|
1.0
|
|
O1
|
G:CAP502
|
4.9
|
13.3
|
1.0
|
|
CE1
|
G:HIS297
|
4.9
|
11.9
|
1.0
|
|
Magnesium binding site 5 out
of 8 in 8bdb
Go back to
Magnesium Binding Sites List in 8bdb
Magnesium binding site 5 out
of 8 in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg501
b:14.4
occ:1.00
|
OD1
|
I:ASP207
|
1.9
|
14.4
|
1.0
|
|
OQ2
|
I:KCX205
|
2.0
|
12.8
|
1.0
|
|
OE1
|
I:GLU208
|
2.0
|
14.7
|
1.0
|
|
O7
|
I:CAP502
|
2.2
|
15.5
|
1.0
|
|
O3
|
I:CAP502
|
2.2
|
15.3
|
1.0
|
|
O2
|
I:CAP502
|
2.4
|
15.7
|
1.0
|
|
C
|
I:CAP502
|
3.0
|
15.7
|
1.0
|
|
C2
|
I:CAP502
|
3.0
|
15.4
|
1.0
|
|
CX
|
I:KCX205
|
3.1
|
13.3
|
1.0
|
|
CD
|
I:GLU208
|
3.1
|
14.8
|
1.0
|
|
CG
|
I:ASP207
|
3.1
|
14.9
|
1.0
|
|
C3
|
I:CAP502
|
3.1
|
15.4
|
1.0
|
|
OQ1
|
I:KCX205
|
3.3
|
13.6
|
1.0
|
|
OE2
|
I:GLU208
|
3.5
|
16.0
|
1.0
|
|
NZ
|
I:LYS181
|
3.7
|
16.2
|
1.0
|
|
N
|
I:GLU208
|
3.8
|
13.8
|
1.0
|
|
OD2
|
I:ASP207
|
3.8
|
15.9
|
1.0
|
|
CG2
|
I:THR177
|
4.0
|
15.0
|
1.0
|
|
NE2
|
I:HIS297
|
4.0
|
14.6
|
1.0
|
|
NZ
|
I:LYS179
|
4.0
|
15.8
|
1.0
|
|
CA
|
I:ASP207
|
4.2
|
13.8
|
1.0
|
|
O6
|
I:CAP502
|
4.2
|
15.9
|
1.0
|
|
CB
|
I:ASP207
|
4.2
|
14.4
|
1.0
|
|
NZ
|
I:KCX205
|
4.2
|
13.0
|
1.0
|
|
CG
|
I:GLU208
|
4.3
|
14.7
|
1.0
|
|
OG1
|
I:THR177
|
4.3
|
15.0
|
1.0
|
|
C4
|
I:CAP502
|
4.4
|
15.4
|
1.0
|
|
C1
|
I:CAP502
|
4.4
|
15.2
|
1.0
|
|
CD2
|
I:HIS297
|
4.4
|
14.3
|
1.0
|
|
C
|
I:ASP207
|
4.5
|
13.9
|
1.0
|
|
CB
|
I:GLU208
|
4.5
|
14.2
|
1.0
|
|
CB
|
I:THR177
|
4.7
|
14.8
|
1.0
|
|
CA
|
I:GLU208
|
4.7
|
13.9
|
1.0
|
|
C5
|
I:CAP502
|
4.9
|
15.2
|
1.0
|
|
O1
|
I:CAP502
|
4.9
|
14.9
|
1.0
|
|
CE1
|
I:HIS297
|
5.0
|
14.7
|
1.0
|
|
Magnesium binding site 6 out
of 8 in 8bdb
Go back to
Magnesium Binding Sites List in 8bdb
Magnesium binding site 6 out
of 8 in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Mg501
b:13.7
occ:1.00
|
OE1
|
K:GLU208
|
2.0
|
12.7
|
1.0
|
|
OD1
|
K:ASP207
|
2.0
|
12.9
|
1.0
|
|
OQ1
|
K:KCX205
|
2.0
|
12.5
|
1.0
|
|
O6
|
K:CAP502
|
2.1
|
12.9
|
1.0
|
|
O3
|
K:CAP502
|
2.2
|
12.8
|
1.0
|
|
O2
|
K:CAP502
|
2.3
|
13.2
|
1.0
|
|
C
|
K:CAP502
|
2.9
|
13.4
|
1.0
|
|
C2
|
K:CAP502
|
2.9
|
13.2
|
1.0
|
|
CD
|
K:GLU208
|
3.1
|
12.5
|
1.0
|
|
C3
|
K:CAP502
|
3.1
|
13.1
|
1.0
|
|
CX
|
K:KCX205
|
3.1
|
12.6
|
1.0
|
|
CG
|
K:ASP207
|
3.2
|
12.8
|
1.0
|
|
OQ2
|
K:KCX205
|
3.3
|
12.9
|
1.0
|
|
OE2
|
K:GLU208
|
3.5
|
12.7
|
1.0
|
|
NZ
|
K:LYS181
|
3.7
|
14.3
|
1.0
|
|
N
|
K:GLU208
|
3.9
|
11.6
|
1.0
|
|
OD2
|
K:ASP207
|
3.9
|
13.7
|
1.0
|
|
NZ
|
K:LYS179
|
3.9
|
12.5
|
1.0
|
|
NE2
|
K:HIS297
|
4.0
|
12.0
|
1.0
|
|
CG2
|
K:THR177
|
4.0
|
12.2
|
1.0
|
|
O7
|
K:CAP502
|
4.1
|
13.0
|
1.0
|
|
CA
|
K:ASP207
|
4.3
|
11.7
|
1.0
|
|
CB
|
K:ASP207
|
4.3
|
12.1
|
1.0
|
|
NZ
|
K:KCX205
|
4.3
|
12.2
|
1.0
|
|
CG
|
K:GLU208
|
4.3
|
12.1
|
1.0
|
|
C4
|
K:CAP502
|
4.3
|
13.3
|
1.0
|
|
OG1
|
K:THR177
|
4.4
|
12.4
|
1.0
|
|
C1
|
K:CAP502
|
4.4
|
13.4
|
1.0
|
|
CD2
|
K:HIS297
|
4.5
|
12.0
|
1.0
|
|
CB
|
K:GLU208
|
4.5
|
11.9
|
1.0
|
|
C
|
K:ASP207
|
4.6
|
11.7
|
1.0
|
|
CB
|
K:THR177
|
4.7
|
12.1
|
1.0
|
|
CA
|
K:GLU208
|
4.8
|
11.7
|
1.0
|
|
C5
|
K:CAP502
|
4.8
|
13.2
|
1.0
|
|
O1
|
K:CAP502
|
4.9
|
13.6
|
1.0
|
|
CE1
|
K:HIS297
|
5.0
|
12.3
|
1.0
|
|
Magnesium binding site 7 out
of 8 in 8bdb
Go back to
Magnesium Binding Sites List in 8bdb
Magnesium binding site 7 out
of 8 in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Mg501
b:16.8
occ:1.00
|
OD1
|
M:ASP207
|
2.0
|
14.6
|
1.0
|
|
OQ2
|
M:KCX205
|
2.0
|
16.4
|
1.0
|
|
OE1
|
M:GLU208
|
2.0
|
16.2
|
1.0
|
|
O7
|
M:CAP502
|
2.2
|
18.5
|
1.0
|
|
O3
|
M:CAP502
|
2.2
|
18.9
|
1.0
|
|
O2
|
M:CAP502
|
2.4
|
18.0
|
1.0
|
|
C2
|
M:CAP502
|
2.9
|
18.4
|
1.0
|
|
C
|
M:CAP502
|
2.9
|
18.4
|
1.0
|
|
CX
|
M:KCX205
|
3.1
|
16.0
|
1.0
|
|
C3
|
M:CAP502
|
3.1
|
18.2
|
1.0
|
|
CD
|
M:GLU208
|
3.1
|
16.7
|
1.0
|
|
CG
|
M:ASP207
|
3.1
|
15.7
|
1.0
|
|
OQ1
|
M:KCX205
|
3.3
|
16.0
|
1.0
|
|
OE2
|
M:GLU208
|
3.6
|
17.2
|
1.0
|
|
NZ
|
M:LYS181
|
3.7
|
16.8
|
1.0
|
|
N
|
M:GLU208
|
3.8
|
15.5
|
1.0
|
|
OD2
|
M:ASP207
|
3.8
|
16.8
|
1.0
|
|
CG2
|
M:THR177
|
4.0
|
16.5
|
1.0
|
|
NZ
|
M:LYS179
|
4.0
|
17.5
|
1.0
|
|
NE2
|
M:HIS297
|
4.0
|
15.8
|
1.0
|
|
O6
|
M:CAP502
|
4.2
|
19.0
|
1.0
|
|
CA
|
M:ASP207
|
4.2
|
15.5
|
1.0
|
|
CB
|
M:ASP207
|
4.2
|
15.5
|
1.0
|
|
NZ
|
M:KCX205
|
4.2
|
15.4
|
1.0
|
|
OG1
|
M:THR177
|
4.3
|
16.4
|
1.0
|
|
CG
|
M:GLU208
|
4.3
|
16.4
|
1.0
|
|
C4
|
M:CAP502
|
4.4
|
18.2
|
1.0
|
|
C1
|
M:CAP502
|
4.4
|
17.4
|
1.0
|
|
CD2
|
M:HIS297
|
4.4
|
15.7
|
1.0
|
|
CB
|
M:GLU208
|
4.5
|
16.1
|
1.0
|
|
C
|
M:ASP207
|
4.5
|
15.6
|
1.0
|
|
CB
|
M:THR177
|
4.7
|
16.4
|
1.0
|
|
CA
|
M:GLU208
|
4.8
|
15.6
|
1.0
|
|
C5
|
M:CAP502
|
4.9
|
17.9
|
1.0
|
|
O1
|
M:CAP502
|
4.9
|
17.2
|
1.0
|
|
CE1
|
M:HIS297
|
5.0
|
15.7
|
1.0
|
|
Magnesium binding site 8 out
of 8 in 8bdb
Go back to
Magnesium Binding Sites List in 8bdb
Magnesium binding site 8 out
of 8 in the Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase From Griffithsia Monilis within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Mg501
b:15.3
occ:1.00
|
OD1
|
O:ASP207
|
2.0
|
13.2
|
1.0
|
|
OQ1
|
O:KCX205
|
2.0
|
13.0
|
1.0
|
|
OE1
|
O:GLU208
|
2.1
|
13.5
|
1.0
|
|
O6
|
O:CAP502
|
2.1
|
14.8
|
1.0
|
|
O3
|
O:CAP502
|
2.2
|
15.8
|
1.0
|
|
O2
|
O:CAP502
|
2.3
|
15.2
|
1.0
|
|
C
|
O:CAP502
|
2.9
|
15.3
|
1.0
|
|
C2
|
O:CAP502
|
2.9
|
15.6
|
1.0
|
|
C3
|
O:CAP502
|
3.1
|
15.6
|
1.0
|
|
CX
|
O:KCX205
|
3.1
|
13.9
|
1.0
|
|
CD
|
O:GLU208
|
3.1
|
13.6
|
1.0
|
|
CG
|
O:ASP207
|
3.2
|
13.3
|
1.0
|
|
OQ2
|
O:KCX205
|
3.3
|
14.0
|
1.0
|
|
OE2
|
O:GLU208
|
3.6
|
14.1
|
1.0
|
|
NZ
|
O:LYS181
|
3.7
|
14.9
|
1.0
|
|
N
|
O:GLU208
|
3.8
|
12.4
|
1.0
|
|
OD2
|
O:ASP207
|
3.9
|
13.7
|
1.0
|
|
NZ
|
O:LYS179
|
3.9
|
14.8
|
1.0
|
|
NE2
|
O:HIS297
|
4.0
|
13.6
|
1.0
|
|
CG2
|
O:THR177
|
4.0
|
14.3
|
1.0
|
|
O7
|
O:CAP502
|
4.1
|
14.9
|
1.0
|
|
CA
|
O:ASP207
|
4.2
|
12.7
|
1.0
|
|
CB
|
O:ASP207
|
4.2
|
12.9
|
1.0
|
|
NZ
|
O:KCX205
|
4.3
|
13.8
|
1.0
|
|
C4
|
O:CAP502
|
4.3
|
15.8
|
1.0
|
|
OG1
|
O:THR177
|
4.4
|
14.3
|
1.0
|
|
CG
|
O:GLU208
|
4.4
|
13.3
|
1.0
|
|
C1
|
O:CAP502
|
4.4
|
15.4
|
1.0
|
|
CD2
|
O:HIS297
|
4.5
|
13.6
|
1.0
|
|
C
|
O:ASP207
|
4.6
|
12.5
|
1.0
|
|
CB
|
O:GLU208
|
4.6
|
12.9
|
1.0
|
|
CB
|
O:THR177
|
4.7
|
14.4
|
1.0
|
|
CA
|
O:GLU208
|
4.8
|
12.6
|
1.0
|
|
C5
|
O:CAP502
|
4.9
|
15.3
|
1.0
|
|
O1
|
O:CAP502
|
4.9
|
15.2
|
1.0
|
|
CE1
|
O:HIS297
|
5.0
|
13.7
|
1.0
|
|
Reference:
Y.Zhou,
L.H.Gunn,
R.Birch,
I.Andersson,
S.M.Whitney.
Grafting Rhodobacter Sphaeroides with Red Algae Rubisco to Enhance Catalysis and Accelerate Plant Growth To Be Published.
DOI: 10.1038/S41477-023-01436-7
Page generated: Thu Oct 3 19:15:52 2024
|
