Magnesium in PDB 8bdr: Early Transcription Elongation State of Influenza B/Mem Polymerase Backtracked Due to Double Incoproation of Nucleotide Analogue T1106 and with Singly Incoporated T1106 at the U +1 Position

Enzymatic activity of Early Transcription Elongation State of Influenza B/Mem Polymerase Backtracked Due to Double Incoproation of Nucleotide Analogue T1106 and with Singly Incoporated T1106 at the U +1 Position

Magnesium Binding Sites:

Magnesium binding site 1 out of 2 in 8bdr

Magnesium Binding Sites List in 8bdr

Magnesium binding site 1 out of 2 in the Early Transcription Elongation State of Influenza B/Mem Polymerase Backtracked Due to Double Incoproation of Nucleotide Analogue T1106 and with Singly Incoporated T1106 at the U +1 Position


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Early Transcription Elongation State of Influenza B/Mem Polymerase Backtracked Due to Double Incoproation of Nucleotide Analogue T1106 and with Singly Incoporated T1106 at the U +1 Position within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg801 b:41.3 occ:1.00 OD2 B:ASP444 2.0 30.8 1.0 OD1 B:ASP444 2.0 40.6 1.0 CG B:ASP444 2.2 32.6 1.0 O17 M:K1F17 2.9 45.7 1.0 HB2 B:ASP305 3.0 24.2 1.0 O3' M:C16 3.1 42.7 1.0 HB3 B:ASP305 3.2 24.2 1.0 H5 M:K1F17 3.5 40.9 1.0 CB B:ASP305 3.6 29.2 1.0 P14 M:K1F17 3.6 50.8 1.0 CB B:ASP444 3.7 21.5 1.0 HO2' M:C16 3.8 41.2 1.0 HB2 B:ASP445 3.8 26.1 1.0 HA B:ASP445 3.9 25.7 1.0 C B:ASP444 3.9 32.1 1.0 N B:ASP445 4.0 29.0 1.0 H B:ASN306 4.0 25.6 1.0 HA B:ASP305 4.0 23.4 1.0 H4' M:C16 4.1 41.2 1.0 O B:ASP444 4.1 29.7 1.0 HB2 B:ASP444 4.1 27.9 1.0 H6 M:K1F17 4.2 41.4 1.0 C12 M:K1F17 4.2 41.8 1.0 H B:ASP445 4.2 27.4 1.0 HB3 B:ASP444 4.2 28.8 1.0 CA B:ASP445 4.2 18.2 1.0 C3' M:C16 4.3 39.8 1.0 CB B:ASP445 4.3 24.2 1.0 CA B:ASP305 4.4 24.5 1.0 CG B:ASP445 4.4 38.1 1.0 CA B:ASP444 4.4 20.1 1.0 O13 M:K1F17 4.4 44.0 1.0 O2' M:C16 4.5 46.3 1.0 H5'' M:C16 4.5 41.9 1.0 C4' M:C16 4.6 41.4 1.0 OD2 B:ASP445 4.7 37.4 1.0 H B:ASP444 4.7 28.4 1.0 N B:ASN306 4.7 24.3 1.0 OD1 B:ASP445 4.7 36.1 1.0 CG B:ASP305 4.7 35.2 1.0 O1 M:K1F17 4.8 43.8 1.0 OD2 B:ASP305 4.9 34.3 1.0 O B:ASN306 5.0 38.1 1.0 H3' M:C16 5.0 41.5 1.0

Magnesium binding site 2 out of 2 in 8bdr

Magnesium Binding Sites List in 8bdr

Magnesium binding site 2 out of 2 in the Early Transcription Elongation State of Influenza B/Mem Polymerase Backtracked Due to Double Incoproation of Nucleotide Analogue T1106 and with Singly Incoporated T1106 at the U +1 Position


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Early Transcription Elongation State of Influenza B/Mem Polymerase Backtracked Due to Double Incoproation of Nucleotide Analogue T1106 and with Singly Incoporated T1106 at the U +1 Position within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:33.9 occ:1.00 OD1 B:ASP445 1.9 36.1 1.0 CG B:ASP445 2.8 38.1 1.0 OD2 B:ASP445 3.0 37.4 1.0 HG23 B:THR303 3.2 22.1 1.0 O B:GLY304 3.3 23.5 1.0 HA B:PHE491 3.6 23.7 1.0 HG22 B:THR303 3.7 22.6 1.0 H B:THR492 3.7 26.0 1.0 HB3 B:ASP305 3.7 24.2 1.0 CG2 B:THR303 3.8 25.2 1.0 C B:GLY304 3.9 17.0 1.0 OE1 B:GLU490 4.0 28.1 1.0 H B:GLY304 4.0 21.2 1.0 H B:PHE446 4.0 23.9 1.0 OE2 B:GLU490 4.0 33.3 1.0 O B:GLU490 4.0 29.6 1.0 HA B:ASP445 4.1 25.7 1.0 HG21 B:THR303 4.2 22.5 1.0 CB B:ASP445 4.2 24.2 1.0 CD B:GLU490 4.2 33.2 1.0 N B:GLY304 4.3 18.5 1.0 N B:ASP305 4.4 18.6 1.0 O B:PHE446 4.5 27.5 1.0 N B:THR492 4.5 25.9 1.0 HA B:ASP305 4.5 23.4 1.0 CA B:PHE491 4.5 21.9 1.0 CB B:ASP305 4.5 29.2 1.0 CA B:GLY304 4.6 17.6 1.0 HB3 B:ASP445 4.6 26.1 1.0 CA B:ASP445 4.7 18.2 1.0 N B:PHE446 4.7 22.4 1.0 C B:GLU490 4.7 23.0 1.0 HD1 B:PHE491 4.7 23.0 1.0 CA B:ASP305 4.7 24.5 1.0 HB2 B:ASP445 4.8 26.1 1.0 C B:THR303 4.8 26.2 1.0 H B:SER493 4.8 24.1 1.0 HA2 B:GLY304 4.9 21.3 1.0 N B:PHE491 4.9 15.1 1.0 HA B:THR303 4.9 22.1 1.0 H B:ASP305 4.9 22.9 1.0 CG B:ASP305 5.0 35.2 1.0

Reference: