Magnesium in PDB 8bl2: Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
Enzymatic activity of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
All present enzymatic activity of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation:
5.6.1.7;
Other elements in 8bl2:
The structure of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Magnesium atom in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
(pdb code 8bl2). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the
Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation, PDB code: 8bl2:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 1 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg601
b:20.3
occ:0.00
|
O1B
|
G:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
G:ASP87
|
2.1
|
13.1
|
1.0
|
|
O2A
|
G:ATP602
|
2.2
|
30.3
|
1.0
|
|
O
|
G:HOH740
|
2.3
|
41.0
|
1.0
|
|
O3G
|
G:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
G:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
G:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
G:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
G:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
G:ATP602
|
3.4
|
11.7
|
1.0
|
|
O3B
|
G:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
G:ATP602
|
3.5
|
0.0
|
1.0
|
|
O
|
G:HOH723
|
3.6
|
31.4
|
1.0
|
|
C5'
|
G:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
G:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
G:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
G:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
G:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
G:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
G:SER151
|
4.3
|
14.8
|
1.0
|
|
O2B
|
G:ATP602
|
4.4
|
6.3
|
1.0
|
|
O
|
G:HOH832
|
4.5
|
29.7
|
1.0
|
|
CA
|
G:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
G:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
G:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
G:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
G:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
G:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
G:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
G:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
G:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
G:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 2 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 2 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:20.3
occ:0.00
|
O1B
|
A:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
A:ASP87
|
2.1
|
13.1
|
1.0
|
|
O
|
A:HOH736
|
2.2
|
37.2
|
1.0
|
|
O2A
|
A:ATP602
|
2.2
|
30.3
|
1.0
|
|
O3G
|
A:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
A:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
A:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
A:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
A:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
A:ATP602
|
3.4
|
11.7
|
1.0
|
|
O3B
|
A:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
A:ATP602
|
3.5
|
0.0
|
1.0
|
|
O
|
A:HOH729
|
3.6
|
31.2
|
1.0
|
|
C5'
|
A:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
A:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
A:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
A:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
A:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
A:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
A:SER151
|
4.3
|
14.8
|
1.0
|
|
O
|
A:HOH705
|
4.4
|
35.3
|
1.0
|
|
O
|
A:HOH822
|
4.4
|
30.3
|
1.0
|
|
O2B
|
A:ATP602
|
4.4
|
6.3
|
1.0
|
|
CA
|
A:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
A:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
A:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
A:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
A:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
A:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
A:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
A:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
A:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
A:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 3 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 3 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:20.3
occ:0.00
|
O1B
|
B:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
B:ASP87
|
2.1
|
13.1
|
1.0
|
|
O2A
|
B:ATP602
|
2.2
|
30.3
|
1.0
|
|
O3G
|
B:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
B:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
B:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
B:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
B:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
B:ATP602
|
3.4
|
11.7
|
1.0
|
|
O3B
|
B:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
B:ATP602
|
3.5
|
0.0
|
1.0
|
|
O
|
B:HOH736
|
3.6
|
31.2
|
1.0
|
|
C5'
|
B:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
B:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
B:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
B:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
B:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
B:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
B:SER151
|
4.3
|
14.8
|
1.0
|
|
O
|
B:HOH824
|
4.4
|
28.7
|
1.0
|
|
O2B
|
B:ATP602
|
4.4
|
6.3
|
1.0
|
|
CA
|
B:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
B:ATP602
|
4.6
|
22.7
|
1.0
|
|
O
|
B:HOH767
|
4.6
|
39.0
|
1.0
|
|
CA
|
B:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
B:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
B:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
B:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
B:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
B:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
B:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
B:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 4 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 4 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:20.3
occ:0.00
|
O1B
|
C:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
C:ASP87
|
2.1
|
13.1
|
1.0
|
|
O2A
|
C:ATP602
|
2.2
|
30.3
|
1.0
|
|
O3G
|
C:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
C:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
C:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
C:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
C:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
C:ATP602
|
3.4
|
11.7
|
1.0
|
|
O3B
|
C:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
C:ATP602
|
3.5
|
0.0
|
1.0
|
|
O
|
C:HOH721
|
3.6
|
27.9
|
1.0
|
|
C5'
|
C:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
C:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
C:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
C:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
C:ATP602
|
4.2
|
8.7
|
1.0
|
|
O
|
C:HOH716
|
4.2
|
35.3
|
1.0
|
|
CB
|
C:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
C:SER151
|
4.3
|
14.8
|
1.0
|
|
O2B
|
C:ATP602
|
4.4
|
6.3
|
1.0
|
|
O
|
C:HOH821
|
4.5
|
27.4
|
1.0
|
|
CA
|
C:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
C:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
C:ASP87
|
4.7
|
9.7
|
1.0
|
|
O
|
C:HOH738
|
4.7
|
12.8
|
1.0
|
|
CA
|
C:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
C:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
C:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
C:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
C:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
C:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
C:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 5 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 5 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg601
b:20.3
occ:0.00
|
O1B
|
D:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
D:ASP87
|
2.1
|
13.1
|
1.0
|
|
O2A
|
D:ATP602
|
2.2
|
30.3
|
1.0
|
|
O
|
D:HOH747
|
2.3
|
39.8
|
1.0
|
|
O3G
|
D:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
D:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
D:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
D:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
D:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
D:ATP602
|
3.4
|
11.7
|
1.0
|
|
O3B
|
D:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
D:ATP602
|
3.5
|
0.0
|
1.0
|
|
O
|
D:HOH731
|
3.7
|
28.9
|
1.0
|
|
C5'
|
D:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
D:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
D:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
D:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
D:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
D:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
D:SER151
|
4.3
|
14.8
|
1.0
|
|
O
|
D:HOH841
|
4.4
|
24.5
|
1.0
|
|
O2B
|
D:ATP602
|
4.4
|
6.3
|
1.0
|
|
CA
|
D:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
D:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
D:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
D:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
D:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
D:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
D:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
D:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
D:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
D:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 6 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 6 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg601
b:20.3
occ:0.00
|
O1B
|
E:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
E:ASP87
|
2.1
|
13.1
|
1.0
|
|
O2A
|
E:ATP602
|
2.2
|
30.3
|
1.0
|
|
O3G
|
E:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
E:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
E:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
E:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
E:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
E:ATP602
|
3.4
|
11.7
|
1.0
|
|
O3B
|
E:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
E:ATP602
|
3.5
|
0.0
|
1.0
|
|
O
|
E:HOH742
|
3.8
|
32.0
|
1.0
|
|
C5'
|
E:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
E:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
E:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
E:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
E:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
E:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
E:SER151
|
4.3
|
14.8
|
1.0
|
|
O
|
E:HOH809
|
4.4
|
27.4
|
1.0
|
|
O2B
|
E:ATP602
|
4.4
|
6.3
|
1.0
|
|
CA
|
E:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
E:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
E:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
E:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
E:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
E:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
E:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
E:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
E:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
E:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 7 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 7 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg601
b:20.3
occ:0.00
|
O1B
|
F:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
F:ASP87
|
2.1
|
13.1
|
1.0
|
|
O
|
F:HOH719
|
2.1
|
30.7
|
1.0
|
|
O2A
|
F:ATP602
|
2.2
|
30.3
|
1.0
|
|
O3G
|
F:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
F:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
F:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
F:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
F:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
F:ATP602
|
3.4
|
11.7
|
1.0
|
|
O3B
|
F:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
F:ATP602
|
3.5
|
0.0
|
1.0
|
|
O
|
F:HOH743
|
3.7
|
25.1
|
1.0
|
|
C5'
|
F:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
F:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
F:ATP602
|
4.1
|
23.7
|
1.0
|
|
O
|
F:HOH730
|
4.2
|
36.0
|
1.0
|
|
OG
|
F:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
F:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
F:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
F:SER151
|
4.3
|
14.8
|
1.0
|
|
O
|
F:HOH707
|
4.4
|
29.6
|
1.0
|
|
O
|
F:HOH840
|
4.4
|
26.5
|
1.0
|
|
O2B
|
F:ATP602
|
4.4
|
6.3
|
1.0
|
|
CA
|
F:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
F:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
F:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
F:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
F:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
F:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
F:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
F:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
F:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
F:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 8 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 8 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg601
b:20.3
occ:0.00
|
O1B
|
H:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
H:ASP87
|
2.1
|
13.1
|
1.0
|
|
O2A
|
H:ATP602
|
2.2
|
30.3
|
1.0
|
|
O3G
|
H:ATP602
|
2.4
|
20.4
|
1.0
|
|
O
|
H:HOH738
|
2.5
|
39.0
|
1.0
|
|
CG
|
H:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
H:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
H:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
H:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
H:ATP602
|
3.4
|
11.7
|
1.0
|
|
O
|
H:HOH736
|
3.4
|
31.2
|
1.0
|
|
O3B
|
H:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
H:ATP602
|
3.5
|
0.0
|
1.0
|
|
C5'
|
H:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
H:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
H:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
H:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
H:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
H:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
H:HOH790
|
4.3
|
21.3
|
1.0
|
|
O
|
H:SER151
|
4.3
|
14.8
|
1.0
|
|
O2B
|
H:ATP602
|
4.4
|
6.3
|
1.0
|
|
CA
|
H:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
H:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
H:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
H:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
H:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
H:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
H:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
H:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
H:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
H:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 9 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 9 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg601
b:20.3
occ:0.00
|
O1B
|
I:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
I:ASP87
|
2.1
|
13.1
|
1.0
|
|
O2A
|
I:ATP602
|
2.2
|
30.3
|
1.0
|
|
O
|
I:HOH744
|
2.4
|
32.7
|
1.0
|
|
O3G
|
I:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
I:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
I:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
I:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
I:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
I:ATP602
|
3.4
|
11.7
|
1.0
|
|
O
|
I:HOH735
|
3.4
|
27.2
|
1.0
|
|
O3B
|
I:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
I:ATP602
|
3.5
|
0.0
|
1.0
|
|
C5'
|
I:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
I:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
I:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
I:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
I:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
I:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
I:HOH785
|
4.3
|
24.2
|
1.0
|
|
O
|
I:SER151
|
4.3
|
14.8
|
1.0
|
|
O
|
I:HOH711
|
4.4
|
31.3
|
1.0
|
|
O2B
|
I:ATP602
|
4.4
|
6.3
|
1.0
|
|
CA
|
I:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
I:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
I:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
I:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
I:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
I:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
I:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
I:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
I:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
I:ASP398
|
5.0
|
29.0
|
1.0
|
|
Magnesium binding site 10 out
of 14 in 8bl2
Go back to
Magnesium Binding Sites List in 8bl2
Magnesium binding site 10 out
of 14 in the Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of Groel-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg601
b:20.3
occ:0.00
|
O1B
|
J:ATP602
|
2.1
|
23.7
|
1.0
|
|
OD1
|
J:ASP87
|
2.1
|
13.1
|
1.0
|
|
O2A
|
J:ATP602
|
2.2
|
30.3
|
1.0
|
|
O3G
|
J:ATP602
|
2.4
|
20.4
|
1.0
|
|
CG
|
J:ASP87
|
2.9
|
11.7
|
1.0
|
|
OD2
|
J:ASP87
|
3.0
|
10.9
|
1.0
|
|
PB
|
J:ATP602
|
3.1
|
0.0
|
1.0
|
|
PA
|
J:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3A
|
J:ATP602
|
3.4
|
11.7
|
1.0
|
|
O
|
J:HOH740
|
3.4
|
25.8
|
1.0
|
|
O3B
|
J:ATP602
|
3.5
|
0.4
|
1.0
|
|
PG
|
J:ATP602
|
3.5
|
0.0
|
1.0
|
|
C5'
|
J:ATP602
|
3.9
|
13.6
|
1.0
|
|
N
|
J:GLY88
|
4.0
|
0.0
|
1.0
|
|
O2G
|
J:ATP602
|
4.1
|
23.7
|
1.0
|
|
OG
|
J:SER151
|
4.2
|
21.1
|
1.0
|
|
O5'
|
J:ATP602
|
4.2
|
8.7
|
1.0
|
|
CB
|
J:ASP87
|
4.3
|
13.4
|
1.0
|
|
O
|
J:HOH778
|
4.3
|
26.9
|
1.0
|
|
O
|
J:HOH772
|
4.3
|
37.0
|
1.0
|
|
O
|
J:SER151
|
4.3
|
14.8
|
1.0
|
|
O2B
|
J:ATP602
|
4.4
|
6.3
|
1.0
|
|
CA
|
J:SER151
|
4.6
|
2.7
|
1.0
|
|
O1A
|
J:ATP602
|
4.6
|
22.7
|
1.0
|
|
CA
|
J:ASP87
|
4.7
|
9.7
|
1.0
|
|
CA
|
J:GLY88
|
4.7
|
0.0
|
1.0
|
|
OD2
|
J:ASP398
|
4.8
|
24.1
|
1.0
|
|
O1G
|
J:ATP602
|
4.8
|
11.7
|
1.0
|
|
C
|
J:ASP87
|
4.9
|
7.9
|
1.0
|
|
CB
|
J:SER151
|
4.9
|
13.0
|
1.0
|
|
C
|
J:SER151
|
5.0
|
8.6
|
1.0
|
|
CG
|
J:ASP398
|
5.0
|
29.0
|
1.0
|
|
Reference:
S.Torino,
M.Dhurandhar,
A.Stroobants,
R.Claessens,
R.Efremov.
Time-Resolved Cryo-Em Using A Combination of Droplet Microfluidics with on-Demand Jetting Nat.Methods 2023.
ISSN: ESSN 1548-7105
DOI: 10.1038/S41592-023-01967-Z
Page generated: Thu Oct 3 19:42:30 2024
|
