Magnesium in PDB 8blc: Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
Enzymatic activity of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
All present enzymatic activity of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp:
5.6.1.7;
Other elements in 8blc:
The structure of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Magnesium atom in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
(pdb code 8blc). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the
Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp, PDB code: 8blc:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 1 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Mg601
b:32.7
occ:0.00
|
OD1
|
G:ASP87
|
2.1
|
32.7
|
1.0
|
|
O3G
|
G:ATP602
|
2.4
|
25.7
|
1.0
|
|
O2A
|
G:ATP602
|
2.5
|
25.2
|
1.0
|
|
O1B
|
G:ATP602
|
2.5
|
28.4
|
1.0
|
|
CG
|
G:ASP87
|
2.9
|
30.7
|
1.0
|
|
OD2
|
G:ASP87
|
3.0
|
29.6
|
1.0
|
|
PB
|
G:ATP602
|
3.4
|
15.3
|
1.0
|
|
O3B
|
G:ATP602
|
3.6
|
18.2
|
1.0
|
|
PG
|
G:ATP602
|
3.6
|
20.2
|
1.0
|
|
PA
|
G:ATP602
|
3.7
|
14.5
|
1.0
|
|
O3A
|
G:ATP602
|
3.8
|
22.5
|
1.0
|
|
OG
|
G:SER151
|
3.9
|
34.7
|
1.0
|
|
O
|
G:HOH720
|
4.0
|
22.5
|
1.0
|
|
N
|
G:GLY88
|
4.1
|
22.6
|
1.0
|
|
C5'
|
G:ATP602
|
4.2
|
9.2
|
1.0
|
|
O
|
G:SER151
|
4.2
|
34.9
|
1.0
|
|
CB
|
G:ASP87
|
4.3
|
28.3
|
1.0
|
|
O2G
|
G:ATP602
|
4.3
|
27.6
|
1.0
|
|
O
|
G:HOH771
|
4.4
|
27.1
|
1.0
|
|
CA
|
G:SER151
|
4.5
|
19.7
|
1.0
|
|
O5'
|
G:ATP602
|
4.5
|
16.8
|
1.0
|
|
OD2
|
G:ASP398
|
4.6
|
38.8
|
1.0
|
|
CB
|
G:SER151
|
4.7
|
22.9
|
1.0
|
|
CA
|
G:ASP87
|
4.8
|
19.9
|
1.0
|
|
O1G
|
G:ATP602
|
4.8
|
12.6
|
1.0
|
|
O1A
|
G:ATP602
|
4.8
|
24.2
|
1.0
|
|
CA
|
G:GLY88
|
4.8
|
15.8
|
1.0
|
|
O2B
|
G:ATP602
|
4.8
|
21.0
|
1.0
|
|
C
|
G:SER151
|
4.8
|
24.9
|
1.0
|
|
CB
|
G:ASP398
|
4.9
|
32.3
|
1.0
|
|
C
|
G:ASP87
|
4.9
|
24.5
|
1.0
|
|
CG
|
G:ASP398
|
4.9
|
40.3
|
1.0
|
|
Magnesium binding site 2 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 2 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg601
b:22.4
occ:0.00
|
OD1
|
A:ASP87
|
2.1
|
29.8
|
1.0
|
|
O3G
|
A:ATP602
|
2.4
|
27.8
|
1.0
|
|
O1B
|
A:ATP602
|
2.5
|
35.8
|
1.0
|
|
O2A
|
A:ATP602
|
2.5
|
31.6
|
1.0
|
|
CG
|
A:ASP87
|
2.9
|
30.2
|
1.0
|
|
OD2
|
A:ASP87
|
3.0
|
28.4
|
1.0
|
|
PB
|
A:ATP602
|
3.4
|
13.9
|
1.0
|
|
O3B
|
A:ATP602
|
3.6
|
28.1
|
1.0
|
|
PG
|
A:ATP602
|
3.6
|
22.4
|
1.0
|
|
PA
|
A:ATP602
|
3.8
|
17.5
|
1.0
|
|
O3A
|
A:ATP602
|
3.8
|
32.1
|
1.0
|
|
OG
|
A:SER151
|
3.9
|
34.0
|
1.0
|
|
O
|
A:HOH722
|
4.0
|
30.6
|
1.0
|
|
N
|
A:GLY88
|
4.1
|
29.4
|
1.0
|
|
C5'
|
A:ATP602
|
4.2
|
18.4
|
1.0
|
|
O
|
A:SER151
|
4.2
|
31.8
|
1.0
|
|
CB
|
A:ASP87
|
4.3
|
27.6
|
1.0
|
|
O2G
|
A:ATP602
|
4.3
|
31.3
|
1.0
|
|
O
|
A:HOH775
|
4.4
|
23.9
|
1.0
|
|
CA
|
A:SER151
|
4.5
|
19.4
|
1.0
|
|
O5'
|
A:ATP602
|
4.5
|
25.2
|
1.0
|
|
OD2
|
A:ASP398
|
4.6
|
39.0
|
1.0
|
|
CB
|
A:SER151
|
4.7
|
23.8
|
1.0
|
|
CA
|
A:ASP87
|
4.7
|
15.7
|
1.0
|
|
O1G
|
A:ATP602
|
4.8
|
22.5
|
1.0
|
|
O2B
|
A:ATP602
|
4.8
|
27.6
|
1.0
|
|
CA
|
A:GLY88
|
4.8
|
27.2
|
1.0
|
|
CB
|
A:ASP398
|
4.8
|
32.2
|
1.0
|
|
C
|
A:SER151
|
4.9
|
24.2
|
1.0
|
|
O1A
|
A:ATP602
|
4.9
|
32.6
|
1.0
|
|
C
|
A:ASP87
|
4.9
|
24.2
|
1.0
|
|
CG
|
A:ASP398
|
4.9
|
40.2
|
1.0
|
|
Magnesium binding site 3 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 3 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:23.2
occ:0.00
|
OD1
|
B:ASP87
|
2.1
|
18.5
|
1.0
|
|
O1B
|
B:ATP602
|
2.4
|
35.3
|
1.0
|
|
O3G
|
B:ATP602
|
2.5
|
26.8
|
1.0
|
|
O2A
|
B:ATP602
|
2.6
|
27.0
|
1.0
|
|
CG
|
B:ASP87
|
2.9
|
18.1
|
1.0
|
|
OD2
|
B:ASP87
|
3.0
|
19.2
|
1.0
|
|
PB
|
B:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3B
|
B:ATP602
|
3.6
|
11.2
|
1.0
|
|
PG
|
B:ATP602
|
3.7
|
0.0
|
1.0
|
|
O3A
|
B:ATP602
|
3.8
|
15.5
|
1.0
|
|
PA
|
B:ATP602
|
3.8
|
0.0
|
1.0
|
|
OG
|
B:SER151
|
3.8
|
28.7
|
1.0
|
|
N
|
B:GLY88
|
4.2
|
16.2
|
1.0
|
|
O
|
B:SER151
|
4.2
|
19.2
|
1.0
|
|
C5'
|
B:ATP602
|
4.2
|
13.6
|
1.0
|
|
CB
|
B:ASP87
|
4.3
|
17.3
|
1.0
|
|
CA
|
B:SER151
|
4.4
|
2.5
|
1.0
|
|
O2G
|
B:ATP602
|
4.4
|
19.6
|
1.0
|
|
O5'
|
B:ATP602
|
4.5
|
15.3
|
1.0
|
|
CB
|
B:SER151
|
4.6
|
7.5
|
1.0
|
|
O2B
|
B:ATP602
|
4.7
|
2.6
|
1.0
|
|
OD2
|
B:ASP398
|
4.8
|
25.0
|
1.0
|
|
C
|
B:SER151
|
4.8
|
8.5
|
1.0
|
|
CA
|
B:ASP87
|
4.8
|
5.0
|
1.0
|
|
O1G
|
B:ATP602
|
4.8
|
10.2
|
1.0
|
|
CB
|
B:ASP398
|
4.9
|
14.4
|
1.0
|
|
CA
|
B:GLY88
|
4.9
|
7.0
|
1.0
|
|
O1A
|
B:ATP602
|
5.0
|
18.3
|
1.0
|
|
C
|
B:ASP87
|
5.0
|
10.7
|
1.0
|
|
Magnesium binding site 4 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 4 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Mg601
b:20.1
occ:0.00
|
O1B
|
C:ATP602
|
2.1
|
36.0
|
1.0
|
|
OD1
|
C:ASP87
|
2.1
|
25.6
|
1.0
|
|
O3G
|
C:ATP602
|
2.5
|
26.6
|
1.0
|
|
O2A
|
C:ATP602
|
2.6
|
29.0
|
1.0
|
|
CG
|
C:ASP87
|
2.9
|
27.3
|
1.0
|
|
OD2
|
C:ASP87
|
3.0
|
24.7
|
1.0
|
|
PB
|
C:ATP602
|
3.3
|
11.8
|
1.0
|
|
O3B
|
C:ATP602
|
3.7
|
20.4
|
1.0
|
|
PG
|
C:ATP602
|
3.7
|
9.9
|
1.0
|
|
O3A
|
C:ATP602
|
3.8
|
24.2
|
1.0
|
|
PA
|
C:ATP602
|
3.8
|
13.6
|
1.0
|
|
OG
|
C:SER151
|
3.9
|
35.3
|
1.0
|
|
N
|
C:GLY88
|
4.2
|
22.3
|
1.0
|
|
C5'
|
C:ATP602
|
4.2
|
16.7
|
1.0
|
|
O
|
C:SER151
|
4.2
|
31.1
|
1.0
|
|
CB
|
C:ASP87
|
4.3
|
23.8
|
1.0
|
|
CA
|
C:SER151
|
4.4
|
13.1
|
1.0
|
|
O5'
|
C:ATP602
|
4.5
|
21.5
|
1.0
|
|
O2G
|
C:ATP602
|
4.6
|
25.8
|
1.0
|
|
O2B
|
C:ATP602
|
4.6
|
14.2
|
1.0
|
|
CB
|
C:SER151
|
4.7
|
16.9
|
1.0
|
|
OD2
|
C:ASP398
|
4.7
|
34.1
|
1.0
|
|
CA
|
C:ASP87
|
4.8
|
10.3
|
1.0
|
|
O1G
|
C:ATP602
|
4.8
|
19.7
|
1.0
|
|
C
|
C:SER151
|
4.8
|
22.6
|
1.0
|
|
CB
|
C:ASP398
|
4.9
|
25.0
|
1.0
|
|
O1A
|
C:ATP602
|
4.9
|
31.1
|
1.0
|
|
CA
|
C:GLY88
|
5.0
|
17.4
|
1.0
|
|
CG
|
C:ASP398
|
5.0
|
37.2
|
1.0
|
|
C
|
C:ASP87
|
5.0
|
20.5
|
1.0
|
|
Magnesium binding site 5 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 5 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Mg601
b:21.0
occ:0.00
|
OD1
|
D:ASP87
|
2.1
|
28.8
|
1.0
|
|
O3G
|
D:ATP602
|
2.4
|
22.9
|
1.0
|
|
O1B
|
D:ATP602
|
2.5
|
32.1
|
1.0
|
|
O2A
|
D:ATP602
|
2.5
|
23.2
|
1.0
|
|
CG
|
D:ASP87
|
2.9
|
28.7
|
1.0
|
|
OD2
|
D:ASP87
|
3.1
|
27.1
|
1.0
|
|
PB
|
D:ATP602
|
3.4
|
9.1
|
1.0
|
|
O3B
|
D:ATP602
|
3.6
|
15.6
|
1.0
|
|
PG
|
D:ATP602
|
3.6
|
16.2
|
1.0
|
|
PA
|
D:ATP602
|
3.8
|
15.3
|
1.0
|
|
O3A
|
D:ATP602
|
3.8
|
22.1
|
1.0
|
|
OG
|
D:SER151
|
4.0
|
36.2
|
1.0
|
|
O
|
D:HOH723
|
4.1
|
14.3
|
1.0
|
|
N
|
D:GLY88
|
4.1
|
14.9
|
1.0
|
|
O
|
D:SER151
|
4.2
|
33.0
|
1.0
|
|
C5'
|
D:ATP602
|
4.3
|
7.7
|
1.0
|
|
CB
|
D:ASP87
|
4.3
|
25.9
|
1.0
|
|
O2G
|
D:ATP602
|
4.4
|
26.2
|
1.0
|
|
O
|
D:HOH752
|
4.4
|
20.9
|
1.0
|
|
CA
|
D:SER151
|
4.5
|
16.8
|
1.0
|
|
O5'
|
D:ATP602
|
4.5
|
20.0
|
1.0
|
|
OD2
|
D:ASP398
|
4.7
|
34.4
|
1.0
|
|
O1G
|
D:ATP602
|
4.7
|
11.4
|
1.0
|
|
CA
|
D:ASP87
|
4.7
|
15.6
|
1.0
|
|
CB
|
D:SER151
|
4.7
|
20.2
|
1.0
|
|
O2B
|
D:ATP602
|
4.8
|
18.7
|
1.0
|
|
C
|
D:SER151
|
4.8
|
22.6
|
1.0
|
|
O1A
|
D:ATP602
|
4.9
|
24.7
|
1.0
|
|
CB
|
D:ASP398
|
4.9
|
30.9
|
1.0
|
|
CA
|
D:GLY88
|
4.9
|
13.4
|
1.0
|
|
C
|
D:ASP87
|
4.9
|
19.3
|
1.0
|
|
Magnesium binding site 6 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 6 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Mg601
b:35.4
occ:0.00
|
OD1
|
E:ASP87
|
2.1
|
31.3
|
1.0
|
|
O3G
|
E:ATP602
|
2.4
|
26.0
|
1.0
|
|
O1B
|
E:ATP602
|
2.5
|
34.9
|
1.0
|
|
O2A
|
E:ATP602
|
2.6
|
31.2
|
1.0
|
|
CG
|
E:ASP87
|
3.0
|
28.5
|
1.0
|
|
OD2
|
E:ASP87
|
3.1
|
25.9
|
1.0
|
|
PB
|
E:ATP602
|
3.4
|
11.7
|
1.0
|
|
O3B
|
E:ATP602
|
3.6
|
22.8
|
1.0
|
|
PG
|
E:ATP602
|
3.6
|
17.2
|
1.0
|
|
PA
|
E:ATP602
|
3.8
|
14.0
|
1.0
|
|
O3A
|
E:ATP602
|
3.8
|
21.2
|
1.0
|
|
OG
|
E:SER151
|
3.9
|
34.7
|
1.0
|
|
O
|
E:HOH711
|
4.0
|
14.9
|
1.0
|
|
O
|
E:SER151
|
4.2
|
33.1
|
1.0
|
|
N
|
E:GLY88
|
4.2
|
17.4
|
1.0
|
|
O
|
E:HOH768
|
4.2
|
34.7
|
1.0
|
|
C5'
|
E:ATP602
|
4.3
|
14.2
|
1.0
|
|
CB
|
E:ASP87
|
4.4
|
24.7
|
1.0
|
|
CA
|
E:SER151
|
4.5
|
18.4
|
1.0
|
|
O2G
|
E:ATP602
|
4.5
|
30.0
|
1.0
|
|
O5'
|
E:ATP602
|
4.6
|
21.2
|
1.0
|
|
O1G
|
E:ATP602
|
4.7
|
13.9
|
1.0
|
|
CB
|
E:SER151
|
4.7
|
22.1
|
1.0
|
|
OD2
|
E:ASP398
|
4.7
|
37.6
|
1.0
|
|
CA
|
E:ASP87
|
4.8
|
11.9
|
1.0
|
|
C
|
E:SER151
|
4.8
|
22.1
|
1.0
|
|
O2B
|
E:ATP602
|
4.8
|
19.4
|
1.0
|
|
CB
|
E:ASP398
|
4.8
|
30.2
|
1.0
|
|
O1A
|
E:ATP602
|
4.9
|
28.3
|
1.0
|
|
CG
|
E:ASP398
|
5.0
|
41.2
|
1.0
|
|
CA
|
E:GLY88
|
5.0
|
12.6
|
1.0
|
|
Magnesium binding site 7 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 7 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Mg601
b:21.3
occ:0.00
|
OD1
|
F:ASP87
|
2.2
|
27.4
|
1.0
|
|
O1B
|
F:ATP602
|
2.4
|
33.6
|
1.0
|
|
O3G
|
F:ATP602
|
2.5
|
27.2
|
1.0
|
|
O2A
|
F:ATP602
|
2.6
|
29.1
|
1.0
|
|
CG
|
F:ASP87
|
2.9
|
29.3
|
1.0
|
|
OD2
|
F:ASP87
|
3.0
|
26.4
|
1.0
|
|
PB
|
F:ATP602
|
3.4
|
9.9
|
1.0
|
|
O3B
|
F:ATP602
|
3.6
|
25.7
|
1.0
|
|
PG
|
F:ATP602
|
3.7
|
20.2
|
1.0
|
|
PA
|
F:ATP602
|
3.8
|
16.6
|
1.0
|
|
O3A
|
F:ATP602
|
3.8
|
25.5
|
1.0
|
|
OG
|
F:SER151
|
3.9
|
34.9
|
1.0
|
|
O
|
F:HOH722
|
4.0
|
10.7
|
1.0
|
|
N
|
F:GLY88
|
4.1
|
25.0
|
1.0
|
|
C5'
|
F:ATP602
|
4.2
|
17.7
|
1.0
|
|
O
|
F:SER151
|
4.2
|
28.7
|
1.0
|
|
CB
|
F:ASP87
|
4.3
|
26.9
|
1.0
|
|
O
|
F:HOH750
|
4.4
|
24.8
|
1.0
|
|
CA
|
F:SER151
|
4.5
|
18.2
|
1.0
|
|
O2G
|
F:ATP602
|
4.5
|
30.6
|
1.0
|
|
O5'
|
F:ATP602
|
4.5
|
23.7
|
1.0
|
|
CB
|
F:SER151
|
4.7
|
20.4
|
1.0
|
|
OD2
|
F:ASP398
|
4.7
|
35.5
|
1.0
|
|
O2B
|
F:ATP602
|
4.8
|
24.1
|
1.0
|
|
CA
|
F:ASP87
|
4.8
|
15.3
|
1.0
|
|
O1G
|
F:ATP602
|
4.8
|
19.5
|
1.0
|
|
C
|
F:SER151
|
4.8
|
24.6
|
1.0
|
|
CB
|
F:ASP398
|
4.9
|
28.1
|
1.0
|
|
CA
|
F:GLY88
|
4.9
|
24.6
|
1.0
|
|
O1A
|
F:ATP602
|
4.9
|
28.1
|
1.0
|
|
C
|
F:ASP87
|
5.0
|
22.4
|
1.0
|
|
Magnesium binding site 8 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 8 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Mg601
b:24.6
occ:0.00
|
OD1
|
H:ASP87
|
2.1
|
26.2
|
1.0
|
|
O3G
|
H:ATP602
|
2.3
|
19.6
|
1.0
|
|
O2A
|
H:ATP602
|
2.5
|
21.4
|
1.0
|
|
O1B
|
H:ATP602
|
2.6
|
24.8
|
1.0
|
|
CG
|
H:ASP87
|
2.9
|
24.9
|
1.0
|
|
O
|
H:HOH776
|
3.1
|
26.3
|
1.0
|
|
OD2
|
H:ASP87
|
3.1
|
26.2
|
1.0
|
|
PB
|
H:ATP602
|
3.4
|
6.1
|
1.0
|
|
O3B
|
H:ATP602
|
3.6
|
13.5
|
1.0
|
|
PG
|
H:ATP602
|
3.6
|
13.4
|
1.0
|
|
PA
|
H:ATP602
|
3.7
|
9.3
|
1.0
|
|
O3A
|
H:ATP602
|
3.8
|
14.4
|
1.0
|
|
OG
|
H:SER151
|
3.9
|
33.6
|
1.0
|
|
O
|
H:HOH715
|
4.0
|
13.4
|
1.0
|
|
N
|
H:GLY88
|
4.1
|
11.7
|
1.0
|
|
O
|
H:HOH770
|
4.2
|
21.0
|
1.0
|
|
O
|
H:SER151
|
4.2
|
29.2
|
1.0
|
|
CB
|
H:ASP87
|
4.3
|
24.6
|
1.0
|
|
C5'
|
H:ATP602
|
4.3
|
4.4
|
1.0
|
|
O2G
|
H:ATP602
|
4.4
|
22.8
|
1.0
|
|
CA
|
H:SER151
|
4.5
|
16.0
|
1.0
|
|
O5'
|
H:ATP602
|
4.6
|
14.8
|
1.0
|
|
OD2
|
H:ASP398
|
4.6
|
32.9
|
1.0
|
|
O1G
|
H:ATP602
|
4.6
|
9.1
|
1.0
|
|
CA
|
H:ASP87
|
4.7
|
15.5
|
1.0
|
|
CB
|
H:SER151
|
4.8
|
21.5
|
1.0
|
|
O1A
|
H:ATP602
|
4.8
|
18.2
|
1.0
|
|
CB
|
H:ASP398
|
4.8
|
24.2
|
1.0
|
|
O2B
|
H:ATP602
|
4.8
|
12.4
|
1.0
|
|
C
|
H:SER151
|
4.9
|
21.0
|
1.0
|
|
CG
|
H:ASP398
|
4.9
|
34.8
|
1.0
|
|
C
|
H:ASP87
|
4.9
|
18.3
|
1.0
|
|
CA
|
H:GLY88
|
4.9
|
6.3
|
1.0
|
|
Magnesium binding site 9 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 9 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Mg601
b:21.0
occ:0.00
|
OD1
|
I:ASP87
|
2.1
|
26.0
|
1.0
|
|
O3G
|
I:ATP602
|
2.3
|
26.0
|
1.0
|
|
O2A
|
I:ATP602
|
2.5
|
25.2
|
1.0
|
|
O1B
|
I:ATP602
|
2.6
|
32.1
|
1.0
|
|
CG
|
I:ASP87
|
2.9
|
27.4
|
1.0
|
|
O
|
I:HOH774
|
3.1
|
26.3
|
1.0
|
|
OD2
|
I:ASP87
|
3.1
|
26.6
|
1.0
|
|
PB
|
I:ATP602
|
3.4
|
6.4
|
1.0
|
|
O3B
|
I:ATP602
|
3.6
|
23.4
|
1.0
|
|
PG
|
I:ATP602
|
3.6
|
13.9
|
1.0
|
|
PA
|
I:ATP602
|
3.7
|
14.8
|
1.0
|
|
O3A
|
I:ATP602
|
3.8
|
23.0
|
1.0
|
|
OG
|
I:SER151
|
3.9
|
35.0
|
1.0
|
|
O
|
I:HOH713
|
4.1
|
27.5
|
1.0
|
|
N
|
I:GLY88
|
4.1
|
25.4
|
1.0
|
|
O
|
I:HOH764
|
4.2
|
22.8
|
1.0
|
|
O
|
I:SER151
|
4.2
|
32.0
|
1.0
|
|
CB
|
I:ASP87
|
4.3
|
26.1
|
1.0
|
|
C5'
|
I:ATP602
|
4.3
|
14.5
|
1.0
|
|
O2G
|
I:ATP602
|
4.4
|
29.0
|
1.0
|
|
CA
|
I:SER151
|
4.5
|
14.3
|
1.0
|
|
O5'
|
I:ATP602
|
4.6
|
22.2
|
1.0
|
|
OD2
|
I:ASP398
|
4.6
|
35.3
|
1.0
|
|
O1G
|
I:ATP602
|
4.6
|
15.8
|
1.0
|
|
CA
|
I:ASP87
|
4.7
|
13.7
|
1.0
|
|
CB
|
I:SER151
|
4.8
|
21.6
|
1.0
|
|
O1A
|
I:ATP602
|
4.8
|
26.2
|
1.0
|
|
CB
|
I:ASP398
|
4.8
|
23.9
|
1.0
|
|
C
|
I:SER151
|
4.8
|
21.6
|
1.0
|
|
O2B
|
I:ATP602
|
4.9
|
22.6
|
1.0
|
|
CG
|
I:ASP398
|
4.9
|
35.5
|
1.0
|
|
C
|
I:ASP87
|
4.9
|
21.4
|
1.0
|
|
CA
|
I:GLY88
|
5.0
|
23.6
|
1.0
|
|
Magnesium binding site 10 out
of 14 in 8blc
Go back to
Magnesium Binding Sites List in 8blc
Magnesium binding site 10 out
of 14 in the Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp
 Mono view
 Stereo pair view
|
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Structure of the Groel-Atp Complex Plunge-Frozen 50 Ms After Mixing with Atp within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Mg601
b:27.4
occ:0.00
|
OD1
|
J:ASP87
|
2.2
|
20.5
|
1.0
|
|
O1B
|
J:ATP602
|
2.3
|
35.0
|
1.0
|
|
O3G
|
J:ATP602
|
2.5
|
26.6
|
1.0
|
|
O2A
|
J:ATP602
|
2.6
|
32.7
|
1.0
|
|
CG
|
J:ASP87
|
2.9
|
18.7
|
1.0
|
|
OD2
|
J:ASP87
|
3.0
|
16.9
|
1.0
|
|
PB
|
J:ATP602
|
3.4
|
0.0
|
1.0
|
|
O3B
|
J:ATP602
|
3.7
|
18.1
|
1.0
|
|
PG
|
J:ATP602
|
3.7
|
0.0
|
1.0
|
|
PA
|
J:ATP602
|
3.8
|
3.7
|
1.0
|
|
O3A
|
J:ATP602
|
3.8
|
21.7
|
1.0
|
|
OG
|
J:SER151
|
3.9
|
29.3
|
1.0
|
|
O
|
J:HOH725
|
4.0
|
8.3
|
1.0
|
|
N
|
J:GLY88
|
4.1
|
15.1
|
1.0
|
|
O
|
J:SER151
|
4.2
|
23.7
|
1.0
|
|
C5'
|
J:ATP602
|
4.2
|
20.2
|
1.0
|
|
CB
|
J:ASP87
|
4.3
|
18.4
|
1.0
|
|
CA
|
J:SER151
|
4.4
|
6.7
|
1.0
|
|
O
|
J:HOH762
|
4.5
|
19.2
|
1.0
|
|
O2G
|
J:ATP602
|
4.5
|
26.4
|
1.0
|
|
O5'
|
J:ATP602
|
4.6
|
19.3
|
1.0
|
|
CB
|
J:SER151
|
4.7
|
11.8
|
1.0
|
|
OD2
|
J:ASP398
|
4.7
|
29.0
|
1.0
|
|
O2B
|
J:ATP602
|
4.7
|
16.7
|
1.0
|
|
CA
|
J:ASP87
|
4.8
|
4.9
|
1.0
|
|
C
|
J:SER151
|
4.8
|
14.3
|
1.0
|
|
O1G
|
J:ATP602
|
4.8
|
17.0
|
1.0
|
|
CB
|
J:ASP398
|
4.9
|
17.6
|
1.0
|
|
CA
|
J:GLY88
|
4.9
|
8.7
|
1.0
|
|
O1A
|
J:ATP602
|
5.0
|
26.4
|
1.0
|
|
C
|
J:ASP87
|
5.0
|
13.3
|
1.0
|
|
Reference:
S.Torino,
M.Dhurandhar,
A.Stroobants,
R.Claessens,
R.Efremov.
Time-Resolved Cryo-Em Using A Combination of Droplet Microfluidics with on-Demand Jetting Nat.Methods 2023.
ISSN: ESSN 1548-7105
DOI: 10.1038/S41592-023-01967-Z
Page generated: Thu Oct 3 19:42:59 2024
|
