Magnesium in PDB 8bm0: Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation

Enzymatic activity of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation

Other elements in 8bm0:

Magnesium Binding Sites:

Magnesium binding site 1 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 1 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg601 b:45.3 occ:1.00 O1G I:ATP603 2.0 56.7 1.0 O1B I:ATP603 2.1 57.3 1.0 O3B I:ATP603 2.1 38.0 1.0 PB I:ATP603 2.4 39.5 1.0 PG I:ATP603 2.4 62.7 1.0 OD1 I:ASP87 2.5 46.6 1.0 O1A I:ATP603 2.6 57.5 1.0 O3A I:ATP603 2.9 47.4 1.0 O2G I:ATP603 3.1 61.0 1.0 PA I:ATP603 3.2 66.7 1.0 CG I:ASP87 3.4 47.6 1.0 OD2 I:ASP87 3.8 47.4 1.0 O3G I:ATP603 3.8 54.8 1.0 O2B I:ATP603 3.8 41.9 1.0 N I:GLY88 4.0 41.6 1.0 O2A I:ATP603 4.1 59.6 1.0 OD2 I:ASP398 4.3 61.2 1.0 K I:K602 4.3 61.4 1.0 O5' I:ATP603 4.5 45.4 1.0 CB I:ASP87 4.7 41.4 1.0 CA I:GLY88 4.7 38.9 1.0 CA I:ASP87 4.8 35.7 1.0 O I:SER151 4.8 51.7 1.0 C I:ASP87 4.9 45.5 1.0

Magnesium binding site 2 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 2 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg601 b:56.6 occ:0.00 O3B G:ATP602 2.0 47.0 1.0 O3G G:ATP602 2.0 55.1 1.0 OD1 G:ASP87 2.1 59.9 1.0 O2A G:ATP602 2.2 57.1 1.0 PB G:ATP602 2.5 59.0 1.0 O1B G:ATP602 2.5 58.4 1.0 PG G:ATP602 2.5 58.0 1.0 O3A G:ATP602 2.8 55.6 1.0 PA G:ATP602 3.0 70.0 1.0 CG G:ASP87 3.2 63.9 1.0 OD2 G:ASP87 3.6 66.6 1.0 O1G G:ATP602 3.6 47.7 1.0 O2G G:ATP602 3.6 61.3 1.0 N G:GLY88 3.8 53.8 1.0 O2B G:ATP602 3.9 56.2 1.0 O1A G:ATP602 4.1 59.1 1.0 O5' G:ATP602 4.1 51.9 1.0 C5' G:ATP602 4.3 51.1 1.0 CB G:ASP87 4.4 57.9 1.0 CA G:GLY88 4.5 46.1 1.0 CA G:ASP87 4.6 57.9 1.0 C G:ASP87 4.7 63.7 1.0 OD2 G:ASP398 4.8 72.3 1.0 OG G:SER151 4.9 73.2 1.0 O G:SER151 5.0 68.2 1.0

Magnesium binding site 3 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 3 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:23.9 occ:1.00 O1G A:ATP603 2.0 46.6 1.0 OD1 A:ASP87 2.1 41.6 1.0 O1A A:ATP603 2.5 50.3 1.0 CG A:ASP87 2.8 42.9 1.0 OD2 A:ASP87 2.9 41.1 1.0 O3B A:ATP603 2.9 34.9 1.0 O1B A:ATP603 3.0 48.0 1.0 PG A:ATP603 3.0 46.9 1.0 PB A:ATP603 3.2 37.5 1.0 O3A A:ATP603 3.2 46.2 1.0 PA A:ATP603 3.3 64.8 1.0 O2G A:ATP603 3.9 55.4 1.0 OG A:SER151 4.0 54.5 1.0 O A:SER151 4.0 49.0 1.0 O3G A:ATP603 4.1 39.9 1.0 O5' A:ATP603 4.1 36.7 1.0 N A:GLY88 4.2 32.6 1.0 CB A:ASP87 4.2 38.8 1.0 OD2 A:ASP398 4.3 62.0 1.0 CB A:ASP398 4.6 55.8 1.0 O2A A:ATP603 4.6 53.6 1.0 CA A:ASP87 4.6 33.3 1.0 O2B A:ATP603 4.7 40.2 1.0 CA A:SER151 4.8 48.9 1.0 C A:SER151 4.8 48.8 1.0 CG A:ASP398 4.9 62.7 1.0 C A:ASP87 5.0 37.5 1.0 CB A:SER151 5.0 47.0 1.0

Magnesium binding site 4 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 4 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:37.2 occ:0.00 O3B C:ATP602 2.0 37.4 1.0 O3G C:ATP602 2.0 42.7 1.0 OD1 C:ASP87 2.1 51.2 1.0 O2A C:ATP602 2.2 45.2 1.0 PB C:ATP602 2.5 43.7 1.0 O1B C:ATP602 2.5 43.7 1.0 PG C:ATP602 2.5 43.2 1.0 O3A C:ATP602 2.7 42.0 1.0 PA C:ATP602 3.0 54.9 1.0 CG C:ASP87 3.2 54.5 1.0 OD2 C:ASP87 3.6 58.5 1.0 O1G C:ATP602 3.6 36.5 1.0 O2G C:ATP602 3.6 47.4 1.0 N C:GLY88 3.8 44.2 1.0 O2B C:ATP602 3.9 42.1 1.0 O1A C:ATP602 4.1 45.3 1.0 O5' C:ATP602 4.1 39.1 1.0 C5' C:ATP602 4.3 41.3 1.0 CB C:ASP87 4.5 50.2 1.0 CA C:GLY88 4.5 36.2 1.0 CA C:ASP87 4.6 48.2 1.0 OD2 C:ASP398 4.7 75.2 1.0 C C:ASP87 4.7 53.8 1.0 O C:SER151 4.9 65.3 1.0 OG C:SER151 4.9 69.4 1.0

Magnesium binding site 5 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 5 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg601 b:31.8 occ:1.00 O1G D:ATP603 2.1 54.0 1.0 OD1 D:ASP87 2.1 42.2 1.0 O1A D:ATP603 2.5 60.0 1.0 CG D:ASP87 2.9 43.6 1.0 OD2 D:ASP87 3.0 43.5 1.0 O1B D:ATP603 3.0 58.2 1.0 O3B D:ATP603 3.0 45.7 1.0 PG D:ATP603 3.1 53.4 1.0 O3A D:ATP603 3.2 53.2 1.0 PB D:ATP603 3.2 44.9 1.0 PA D:ATP603 3.4 67.1 1.0 O D:SER151 3.9 51.1 1.0 OG D:SER151 4.0 60.5 1.0 O2G D:ATP603 4.1 61.7 1.0 O5' D:ATP603 4.2 44.1 1.0 O3G D:ATP603 4.2 44.7 1.0 N D:GLY88 4.3 34.5 1.0 CB D:ASP87 4.3 38.5 1.0 OD2 D:ASP398 4.3 62.6 1.0 CB D:ASP398 4.5 57.9 1.0 O2A D:ATP603 4.7 62.0 1.0 CA D:ASP87 4.7 34.5 1.0 CA D:SER151 4.7 51.7 1.0 C D:SER151 4.7 50.6 1.0 O2B D:ATP603 4.8 45.1 1.0 CG D:ASP398 4.8 63.5 1.0 CB D:SER151 4.9 53.4 1.0

Magnesium binding site 6 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 6 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg601 b:32.5 occ:0.00 O3B F:ATP602 2.0 53.4 1.0 O3G F:ATP602 2.0 59.9 1.0 OD1 F:ASP87 2.1 48.2 1.0 O2A F:ATP602 2.2 61.6 1.0 PB F:ATP602 2.5 56.5 1.0 O1B F:ATP602 2.5 62.2 1.0 PG F:ATP602 2.5 56.4 1.0 O3A F:ATP602 2.8 60.1 1.0 PA F:ATP602 3.1 64.2 1.0 CG F:ASP87 3.1 50.5 1.0 OD2 F:ASP87 3.5 53.0 1.0 O1G F:ATP602 3.6 55.6 1.0 O2G F:ATP602 3.6 60.7 1.0 N F:GLY88 3.8 40.9 1.0 O2B F:ATP602 3.9 56.4 1.0 O1A F:ATP602 4.1 61.5 1.0 O5' F:ATP602 4.1 58.1 1.0 C5' F:ATP602 4.3 60.1 1.0 CB F:ASP87 4.4 44.8 1.0 CA F:GLY88 4.5 33.0 1.0 CA F:ASP87 4.6 43.5 1.0 C F:ASP87 4.7 48.1 1.0 OD2 F:ASP398 4.7 65.3 1.0 OG F:SER151 4.9 67.1 1.0 O F:SER151 4.9 64.8 1.0

Magnesium binding site 7 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 7 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg601 b:32.6 occ:1.00 O1G H:ATP603 2.0 58.2 1.0 OD1 H:ASP87 2.1 42.6 1.0 O1A H:ATP603 2.6 59.0 1.0 O3B H:ATP603 2.8 49.0 1.0 O1B H:ATP603 2.9 59.3 1.0 CG H:ASP87 2.9 46.7 1.0 PG H:ATP603 2.9 54.8 1.0 OD2 H:ASP87 3.0 45.4 1.0 PB H:ATP603 3.1 45.1 1.0 O3A H:ATP603 3.1 56.1 1.0 PA H:ATP603 3.3 71.9 1.0 O2G H:ATP603 4.0 65.1 1.0 O3G H:ATP603 4.0 48.3 1.0 O H:SER151 4.1 52.7 1.0 O5' H:ATP603 4.1 50.2 1.0 N H:GLY88 4.1 38.9 1.0 OG H:SER151 4.1 57.9 1.0 CB H:ASP87 4.3 40.7 1.0 OD2 H:ASP398 4.3 58.0 1.0 O2B H:ATP603 4.6 49.7 1.0 CB H:ASP398 4.6 54.3 1.0 O2A H:ATP603 4.6 65.3 1.0 CA H:ASP87 4.6 36.1 1.0 CG H:ASP398 4.8 60.3 1.0 CA H:SER151 4.9 49.3 1.0 C H:SER151 4.9 49.9 1.0 C H:ASP87 4.9 41.7 1.0 CA H:GLY88 5.0 40.1 1.0

Magnesium binding site 8 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 8 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg601 b:52.2 occ:0.00 O3G K:ATP602 2.0 52.6 1.0 O3B K:ATP602 2.0 38.8 1.0 OD1 K:ASP87 2.1 58.1 1.0 O2A K:ATP602 2.3 53.3 1.0 O1B K:ATP602 2.4 50.4 1.0 PB K:ATP602 2.4 53.7 1.0 PG K:ATP602 2.5 50.1 1.0 O3A K:ATP602 2.7 53.6 1.0 PA K:ATP602 3.0 65.8 1.0 CG K:ASP87 3.1 61.8 1.0 OD2 K:ASP87 3.5 66.1 1.0 O2G K:ATP602 3.6 62.0 1.0 O1G K:ATP602 3.6 42.3 1.0 N K:GLY88 3.8 47.2 1.0 O2B K:ATP602 3.9 55.6 1.0 O1A K:ATP602 4.1 56.3 1.0 O5' K:ATP602 4.1 47.1 1.0 C5' K:ATP602 4.3 49.6 1.0 CB K:ASP87 4.4 53.4 1.0 CA K:ASP87 4.5 54.8 1.0 CA K:GLY88 4.5 42.2 1.0 C K:ASP87 4.7 58.9 1.0 OD2 K:ASP398 4.7 71.1 1.0 OG K:SER151 4.9 68.4 1.0 O K:SER151 4.9 64.8 1.0 K K:K603 5.0 56.1 1.0

Magnesium binding site 9 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 9 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ L:Mg601 b:41.8 occ:1.00 O1G L:ATP603 2.0 55.8 1.0 O1B L:ATP603 2.0 57.8 1.0 O3B L:ATP603 2.2 35.7 1.0 PB L:ATP603 2.4 37.4 1.0 PG L:ATP603 2.4 63.3 1.0 OD1 L:ASP87 2.5 42.9 1.0 O1A L:ATP603 2.6 54.9 1.0 O3A L:ATP603 2.9 50.5 1.0 O2G L:ATP603 3.1 61.9 1.0 PA L:ATP603 3.2 66.8 1.0 CG L:ASP87 3.4 45.0 1.0 OD2 L:ASP87 3.8 42.5 1.0 O3G L:ATP603 3.8 54.1 1.0 O2B L:ATP603 3.9 35.6 1.0 N L:GLY88 4.0 40.1 1.0 O2A L:ATP603 4.1 60.3 1.0 K L:K602 4.3 67.3 1.0 OD2 L:ASP398 4.3 63.4 1.0 O5' L:ATP603 4.5 40.8 1.0 CB L:ASP87 4.7 39.5 1.0 CA L:GLY88 4.7 39.0 1.0 CA L:ASP87 4.7 32.2 1.0 O L:SER151 4.8 55.8 1.0 C L:ASP87 4.9 41.4 1.0

Magnesium binding site 10 out of 14 in 8bm0

Magnesium Binding Sites List in 8bm0

Magnesium binding site 10 out of 14 in the Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structure of Groel:Groes-Atp Complex Plunge Frozen 200 Ms After Reaction Initiation within 5.0Å range: probe atom residue distance (Å) B Occ N:Mg601 b:50.0 occ:0.00 O3B N:ATP602 2.0 40.2 1.0 O3G N:ATP602 2.0 50.9 1.0 OD1 N:ASP87 2.2 54.4 1.0 O2A N:ATP602 2.2 53.8 1.0 O1B N:ATP602 2.4 50.7 1.0 PB N:ATP602 2.4 47.6 1.0 PG N:ATP602 2.5 48.9 1.0 O3A N:ATP602 2.7 50.1 1.0 PA N:ATP602 3.0 65.0 1.0 CG N:ASP87 3.1 57.9 1.0 OD2 N:ASP87 3.5 61.8 1.0 O2G N:ATP602 3.6 54.7 1.0 O1G N:ATP602 3.6 42.8 1.0 N N:GLY88 3.7 47.2 1.0 O2B N:ATP602 3.9 47.8 1.0 O1A N:ATP602 4.1 53.0 1.0 O5' N:ATP602 4.1 47.4 1.0 C5' N:ATP602 4.2 47.9 1.0 CB N:ASP87 4.4 50.9 1.0 CA N:GLY88 4.5 39.6 1.0 CA N:ASP87 4.6 50.4 1.0 C N:ASP87 4.7 56.9 1.0 OD2 N:ASP398 4.8 71.7 1.0 OG N:SER151 4.8 67.0 1.0 O N:SER151 5.0 63.6 1.0

Reference: