Magnesium in PDB 8bos: Transition State Analogue Complex of Small G Protein and Its Gap Effector

All present enzymatic activity of Transition State Analogue Complex of Small G Protein and Its Gap Effector:
3.6.5.2;

The structure of Transition State Analogue Complex of Small G Protein and Its Gap Effector, PDB code: 8bos was solved by P.Baumann, Y.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	84.66 / 2.10
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	71.832, 41.558, 89.674, 90, 109.25, 90
R / Rfree (%)	19.8 / 28

The structure of Transition State Analogue Complex of Small G Protein and Its Gap Effector also contains other interesting chemical elements:

Fluorine

(F)

3 atoms

The binding sites of Magnesium atom in the Transition State Analogue Complex of Small G Protein and Its Gap Effector (pdb code 8bos). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Transition State Analogue Complex of Small G Protein and Its Gap Effector, PDB code: 8bos:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Transition State Analogue Complex of Small G Protein and Its Gap Effector


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Transition State Analogue Complex of Small G Protein and Its Gap Effector within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg202 b:25.5 occ:1.00 MG R:MGF202 0.0 25.5 1.0 F2 R:MGF202 1.9 23.0 1.0 F1 R:MGF202 2.0 25.2 1.0 F3 R:MGF202 2.0 24.1 1.0 O3B R:GDP201 2.0 29.3 1.0 O R:HOH311 2.0 18.2 1.0 NH1 G:ARG789 3.1 29.1 1.0 PB R:GDP201 3.4 29.7 1.0 O R:HOH302 3.5 29.5 1.0 MG R:MG203 3.6 31.6 1.0 NE2 R:GLN61 3.7 28.3 1.0 O1B R:GDP201 3.8 26.0 1.0 NZ R:LYS16 3.8 25.2 1.0 N R:THR35 3.9 24.9 1.0 OE1 R:GLN61 3.9 28.2 1.0 CA R:GLY12 4.0 30.8 1.0 N R:GLY13 4.1 28.0 1.0 O2B R:GDP201 4.1 25.5 1.0 CD R:GLN61 4.2 26.6 1.0 O R:HOH307 4.3 24.4 1.0 N R:GLY60 4.3 28.5 1.0 O R:THR58 4.3 36.4 1.0 CZ G:ARG789 4.4 32.1 1.0 OG1 R:THR35 4.5 22.6 1.0 CA R:PRO34 4.5 28.2 1.0 CA R:ALA59 4.5 30.3 1.0 O R:THR35 4.5 26.7 1.0 CB R:THR35 4.6 24.4 1.0 C R:GLY12 4.6 29.3 1.0 CE R:LYS16 4.6 25.2 1.0 O3A R:GDP201 4.6 27.2 1.0 CB R:PRO34 4.7 27.1 1.0 CA R:THR35 4.7 25.3 1.0 C R:PRO34 4.8 28.5 1.0 CG G:ARG789 4.9 35.4 1.0 C R:ALA59 5.0 28.3 1.0

Magnesium binding site 2 out of 2 in the Transition State Analogue Complex of Small G Protein and Its Gap Effector


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Transition State Analogue Complex of Small G Protein and Its Gap Effector within 5.0Å range: probe atom residue distance (Å) B Occ R:Mg203 b:31.6 occ:1.00 F2 R:MGF202 1.9 23.0 1.0 O R:HOH302 2.0 29.5 1.0 O1B R:GDP201 2.0 26.0 1.0 OG R:SER17 2.0 34.6 1.0 OG1 R:THR35 2.0 22.6 1.0 O R:HOH307 2.0 24.4 1.0 CB R:THR35 3.1 24.4 1.0 CB R:SER17 3.2 35.2 1.0 PB R:GDP201 3.2 29.7 1.0 O3B R:GDP201 3.5 29.3 1.0 MG R:MGF202 3.6 25.5 1.0 OD1 R:ASP57 3.7 38.5 1.0 N R:THR35 3.7 24.9 1.0 OD2 R:ASP57 3.9 39.2 1.0 O1A R:GDP201 3.9 30.9 1.0 N R:SER17 3.9 31.5 1.0 CA R:THR35 4.0 25.3 1.0 CA R:SER17 4.1 34.0 1.0 CG2 R:THR35 4.1 24.8 1.0 O3A R:GDP201 4.1 27.2 1.0 CG R:ASP57 4.2 37.6 1.0 O2A R:GDP201 4.2 30.9 1.0 O R:THR58 4.2 36.4 1.0 O2B R:GDP201 4.3 25.5 1.0 PA R:GDP201 4.3 30.1 1.0 O R:ASP33 4.5 32.5 1.0 NH1 G:ARG789 4.6 29.1 1.0 O R:HOH311 4.6 18.2 1.0 F3 R:MGF202 4.6 24.1 1.0 C R:PRO34 4.7 28.5 1.0 CA R:PRO34 4.9 28.2 1.0 CB R:LYS16 4.9 25.3 1.0

P.Baumann, Y.Jin. A Small G Protein with MGF3 Tsa Complex To Be Published.