Atomistry » Magnesium » PDB 8bi7-8bw1 » 8bos
Atomistry »
  Magnesium »
    PDB 8bi7-8bw1 »
      8bos »

Magnesium in PDB 8bos: Transition State Analogue Complex of Small G Protein and Its Gap Effector

Enzymatic activity of Transition State Analogue Complex of Small G Protein and Its Gap Effector

All present enzymatic activity of Transition State Analogue Complex of Small G Protein and Its Gap Effector:
3.6.5.2;

Protein crystallography data

The structure of Transition State Analogue Complex of Small G Protein and Its Gap Effector, PDB code: 8bos was solved by P.Baumann, Y.Jin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 84.66 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 71.832, 41.558, 89.674, 90, 109.25, 90
R / Rfree (%) 19.8 / 28

Other elements in 8bos:

The structure of Transition State Analogue Complex of Small G Protein and Its Gap Effector also contains other interesting chemical elements:

Fluorine (F) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Transition State Analogue Complex of Small G Protein and Its Gap Effector (pdb code 8bos). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Transition State Analogue Complex of Small G Protein and Its Gap Effector, PDB code: 8bos:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8bos

Go back to Magnesium Binding Sites List in 8bos
Magnesium binding site 1 out of 2 in the Transition State Analogue Complex of Small G Protein and Its Gap Effector


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Transition State Analogue Complex of Small G Protein and Its Gap Effector within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Mg202

b:25.5
occ:1.00
MG R:MGF202 0.0 25.5 1.0
F2 R:MGF202 1.9 23.0 1.0
F1 R:MGF202 2.0 25.2 1.0
F3 R:MGF202 2.0 24.1 1.0
O3B R:GDP201 2.0 29.3 1.0
O R:HOH311 2.0 18.2 1.0
NH1 G:ARG789 3.1 29.1 1.0
PB R:GDP201 3.4 29.7 1.0
O R:HOH302 3.5 29.5 1.0
MG R:MG203 3.6 31.6 1.0
NE2 R:GLN61 3.7 28.3 1.0
O1B R:GDP201 3.8 26.0 1.0
NZ R:LYS16 3.8 25.2 1.0
N R:THR35 3.9 24.9 1.0
OE1 R:GLN61 3.9 28.2 1.0
CA R:GLY12 4.0 30.8 1.0
N R:GLY13 4.1 28.0 1.0
O2B R:GDP201 4.1 25.5 1.0
CD R:GLN61 4.2 26.6 1.0
O R:HOH307 4.3 24.4 1.0
N R:GLY60 4.3 28.5 1.0
O R:THR58 4.3 36.4 1.0
CZ G:ARG789 4.4 32.1 1.0
OG1 R:THR35 4.5 22.6 1.0
CA R:PRO34 4.5 28.2 1.0
CA R:ALA59 4.5 30.3 1.0
O R:THR35 4.5 26.7 1.0
CB R:THR35 4.6 24.4 1.0
C R:GLY12 4.6 29.3 1.0
CE R:LYS16 4.6 25.2 1.0
O3A R:GDP201 4.6 27.2 1.0
CB R:PRO34 4.7 27.1 1.0
CA R:THR35 4.7 25.3 1.0
C R:PRO34 4.8 28.5 1.0
CG G:ARG789 4.9 35.4 1.0
C R:ALA59 5.0 28.3 1.0

Magnesium binding site 2 out of 2 in 8bos

Go back to Magnesium Binding Sites List in 8bos
Magnesium binding site 2 out of 2 in the Transition State Analogue Complex of Small G Protein and Its Gap Effector


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Transition State Analogue Complex of Small G Protein and Its Gap Effector within 5.0Å range:
probe atom residue distance (Å) B Occ
R:Mg203

b:31.6
occ:1.00
F2 R:MGF202 1.9 23.0 1.0
O R:HOH302 2.0 29.5 1.0
O1B R:GDP201 2.0 26.0 1.0
OG R:SER17 2.0 34.6 1.0
OG1 R:THR35 2.0 22.6 1.0
O R:HOH307 2.0 24.4 1.0
CB R:THR35 3.1 24.4 1.0
CB R:SER17 3.2 35.2 1.0
PB R:GDP201 3.2 29.7 1.0
O3B R:GDP201 3.5 29.3 1.0
MG R:MGF202 3.6 25.5 1.0
OD1 R:ASP57 3.7 38.5 1.0
N R:THR35 3.7 24.9 1.0
OD2 R:ASP57 3.9 39.2 1.0
O1A R:GDP201 3.9 30.9 1.0
N R:SER17 3.9 31.5 1.0
CA R:THR35 4.0 25.3 1.0
CA R:SER17 4.1 34.0 1.0
CG2 R:THR35 4.1 24.8 1.0
O3A R:GDP201 4.1 27.2 1.0
CG R:ASP57 4.2 37.6 1.0
O2A R:GDP201 4.2 30.9 1.0
O R:THR58 4.2 36.4 1.0
O2B R:GDP201 4.3 25.5 1.0
PA R:GDP201 4.3 30.1 1.0
O R:ASP33 4.5 32.5 1.0
NH1 G:ARG789 4.6 29.1 1.0
O R:HOH311 4.6 18.2 1.0
F3 R:MGF202 4.6 24.1 1.0
C R:PRO34 4.7 28.5 1.0
CA R:PRO34 4.9 28.2 1.0
CB R:LYS16 4.9 25.3 1.0

Reference:

P.Baumann, Y.Jin. A Small G Protein with MGF3 Tsa Complex To Be Published.
Page generated: Thu Oct 3 19:50:13 2024

Last articles

Mg in 8CCO
Mg in 8CE5
Mg in 8CCN
Mg in 8CE2
Mg in 8CDQ
Mg in 8CCM
Mg in 8CCL
Mg in 8CCK
Mg in 8CCJ
Mg in 8CCI
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy