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Magnesium in PDB 8bpr: Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction).

Other elements in 8bpr:

The structure of Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). also contains other interesting chemical elements:

Zinc (Zn) 3 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). (pdb code 8bpr). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction)., PDB code: 8bpr:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in 8bpr

Go back to Magnesium Binding Sites List in 8bpr
Magnesium binding site 1 out of 2 in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg902

b:71.9
occ:1.00
O1B A:ANP901 2.1 88.6 1.0
O2G A:ANP901 2.1 88.6 1.0
OG1 A:THR37 2.2 78.4 1.0
CB A:THR37 3.4 78.4 1.0
PB A:ANP901 3.4 88.6 1.0
PG A:ANP901 3.5 88.6 1.0
N3B A:ANP901 3.7 88.6 1.0
CG2 A:THR37 4.1 78.4 1.0
O2A A:ANP901 4.3 88.6 1.0
OD2 A:ASP293 4.3 74.0 1.0
O3G A:ANP901 4.4 88.6 1.0
O3A A:ANP901 4.4 88.6 1.0
O1G A:ANP901 4.4 88.6 1.0
O2B A:ANP901 4.5 88.6 1.0
CA A:THR37 4.5 78.4 1.0
N A:THR37 4.5 78.4 1.0
OE2 A:GLU294 4.5 81.5 1.0
CG B:ARG262 4.7 85.2 1.0
OD1 A:ASP293 4.8 74.0 1.0
PA A:ANP901 4.8 88.6 1.0
CG A:ASP293 5.0 74.0 1.0

Magnesium binding site 2 out of 2 in 8bpr

Go back to Magnesium Binding Sites List in 8bpr
Magnesium binding site 2 out of 2 in the Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction).


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Complex of Recf-Reco-Recr-Dna From Thermus Thermophilus (Low Resolution Reconstruction). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg902

b:77.0
occ:1.00
O2G B:ANP901 2.1 80.5 1.0
OG1 B:THR37 2.1 70.8 1.0
O1B B:ANP901 2.1 80.5 1.0
CB B:THR37 3.2 70.8 1.0
PB B:ANP901 3.3 80.5 1.0
PG B:ANP901 3.4 80.5 1.0
N3B B:ANP901 3.5 80.5 1.0
O2A B:ANP901 3.9 80.5 1.0
CG2 B:THR37 4.0 70.8 1.0
O3A B:ANP901 4.2 80.5 1.0
O3G B:ANP901 4.3 80.5 1.0
O1G B:ANP901 4.3 80.5 1.0
CA B:THR37 4.4 70.8 1.0
N B:THR37 4.4 70.8 1.0
O2B B:ANP901 4.5 80.5 1.0
PA B:ANP901 4.5 80.5 1.0
CG A:ARG262 4.7 80.8 1.0
CB A:SER261 4.7 82.5 1.0
OD1 B:ASP293 4.8 83.7 1.0
N A:ARG262 4.9 80.8 1.0
O1A B:ANP901 5.0 80.5 1.0
OD2 B:ASP293 5.0 83.7 1.0

Reference:

S.Nirwal, M.Czarnocki-Cieciura, A.Chaudhary, W.Zajko, K.Skowronek, S.Chamera, M.Figiel, M.Nowotny. Mechanism of Recf-Reco-Recr Cooperation in Bacterial Homologous Recombination Nat.Struct.Mol.Biol. 2023.
ISSN: ESSN 1545-9985
DOI: 10.1038/S41594-023-00967-Z
Page generated: Thu Oct 3 19:50:20 2024

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