Magnesium in PDB 8bws: Structure of Yeast Rna Polymerase III Elongation Complex at 3.3 A

All present enzymatic activity of Structure of Yeast Rna Polymerase III Elongation Complex at 3.3 A:
2.7.7.6;

The structure of Structure of Yeast Rna Polymerase III Elongation Complex at 3.3 A also contains other interesting chemical elements:

Zinc

(Zn)

6 atoms

The binding sites of Magnesium atom in the Structure of Yeast Rna Polymerase III Elongation Complex at 3.3 A (pdb code 8bws). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of Yeast Rna Polymerase III Elongation Complex at 3.3 A, PDB code: 8bws:

Magnesium binding site 1 out of 1 in the Structure of Yeast Rna Polymerase III Elongation Complex at 3.3 A


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of Yeast Rna Polymerase III Elongation Complex at 3.3 A within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1503 b:65.2 occ:1.00 CB A:ASP511 1.9 52.0 1.0 OD1 A:ASP513 2.1 54.2 1.0 O3' R:A10 2.1 85.2 1.0 OD2 A:ASP511 2.1 52.0 1.0 OD2 A:ASP513 2.1 54.2 1.0 OD1 A:ASP515 2.2 54.2 1.0 CG A:ASP513 2.3 54.2 1.0 CG A:ASP511 2.3 52.0 1.0 CG A:ASP515 3.3 54.2 1.0 CA A:ASP511 3.4 52.0 1.0 C3' R:A10 3.4 85.2 1.0 OD1 A:ASP511 3.5 52.0 1.0 CB A:ASP513 3.7 54.2 1.0 C4' R:A10 3.9 85.2 1.0 OD2 A:ASP515 3.9 54.2 1.0 N A:ASP511 4.0 52.0 1.0 N A:ASP513 4.0 54.2 1.0 C A:ASP511 4.1 52.0 1.0 O2' R:A10 4.2 85.2 1.0 C5' R:A10 4.3 85.2 1.0 C2' R:A10 4.4 85.2 1.0 CA A:ASP513 4.4 54.2 1.0 N A:PHE512 4.4 44.9 1.0 CB A:ASP515 4.5 54.2 1.0 O A:ASP511 4.7 52.0 1.0 N A:ASP515 4.8 54.2 1.0 C A:ASP513 4.9 54.2 1.0 CA A:ASP515 5.0 54.2 1.0

P.Q.Nguyen, S.Huecas, A.Asif-Laidin, A.Plaza-Pegueroles, B.Capuzzi, N.Palmic, C.Conesa, J.Acker, J.Reguera, P.Lesage, C.Fernandez-Tornero. Structural Basis of TY1 Integrase Tethering to Rna Polymerase III For Targeted Retrotransposon Integration. Nat Commun V. 14 1729 2023.
ISSN: ESSN 2041-1723
PubMed: 36977686
DOI: 10.1038/S41467-023-37109-4