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Magnesium in PDB 8bzc: Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244)

Protein crystallography data

The structure of Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244), PDB code: 8bzc was solved by E.J.Visser, E.Sijbesma, C.Ottmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.36 / 1.10
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 81.723, 112.327, 62.374, 90, 90, 90
R / Rfree (%) 17.2 / 17.7

Other elements in 8bzc:

The structure of Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244) (pdb code 8bzc). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 3 binding sites of Magnesium where determined in the Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244), PDB code: 8bzc:
Jump to Magnesium binding site number: 1; 2; 3;

Magnesium binding site 1 out of 3 in 8bzc

Go back to Magnesium Binding Sites List in 8bzc
Magnesium binding site 1 out of 3 in the Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg301

b:31.3
occ:1.00
O A:HOH455 2.7 12.4 1.0
O A:HOH717 3.3 23.5 1.0
O A:HOH630 3.3 21.7 1.0
HZ2 A:LYS159 3.6 38.7 1.0
HZ1 A:LYS159 4.0 38.7 1.0
O A:HOH424 4.2 28.7 1.0
NZ A:LYS159 4.2 32.2 1.0
O A:HOH545 4.5 15.9 1.0
OE2 A:GLU189 4.5 12.1 1.0
HZ3 A:LYS159 4.7 38.7 1.0
HE22 A:GLN152 4.9 17.4 1.0

Magnesium binding site 2 out of 3 in 8bzc

Go back to Magnesium Binding Sites List in 8bzc
Magnesium binding site 2 out of 3 in the Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg302

b:31.4
occ:0.73
O A:HOH408 2.5 5.2 0.5
O A:HOH493 3.8 14.1 1.0
O A:HOH536 4.0 20.2 1.0
O A:HOH426 4.1 13.9 1.0
OE1 A:GLU2 4.9 13.9 1.0

Magnesium binding site 3 out of 3 in 8bzc

Go back to Magnesium Binding Sites List in 8bzc
Magnesium binding site 3 out of 3 in the Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Co-Soaked Stabilizers For Era - 14-3-3 Interaction (884_AZ244) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg303

b:18.3
occ:1.00
O A:HOH603 2.2 34.1 1.0
O A:HOH456 2.2 24.0 1.0
O A:HOH660 2.3 30.6 1.0
O A:HOH617 2.3 33.1 1.0
OE2 A:GLU89 2.4 16.5 1.0
O A:HOH638 2.4 26.0 1.0
CD A:GLU89 3.5 12.1 1.0
HG2 A:GLU86 3.6 18.4 1.0
HG2 A:GLU89 3.7 14.5 1.0
HH12 A:ARG85 4.0 19.7 1.0
O A:HOH595 4.0 30.4 1.0
HE22 A:GLN93 4.0 16.1 1.0
CG A:GLU89 4.1 12.1 1.0
HB3 A:GLU89 4.3 12.8 1.0
OE1 A:GLU89 4.4 12.6 1.0
HH11 A:ARG85 4.4 19.7 1.0
OE1 A:GLN93 4.5 13.2 1.0
HA A:GLU86 4.5 13.6 1.0
CG A:GLU86 4.5 15.3 1.0
NH1 A:ARG85 4.5 16.4 1.0
HG1 A:THR90 4.6 19.2 1.0
O A:HOH645 4.6 27.7 1.0
O A:HOH492 4.6 27.2 1.0
NE2 A:GLN93 4.6 13.4 1.0
CB A:GLU89 4.8 10.6 1.0
OG1 A:THR90 4.9 16.0 1.0
HB3 A:GLU86 4.9 15.3 1.0
HG3 A:GLU86 4.9 18.4 1.0
HG3 A:GLU89 4.9 14.5 1.0
CD A:GLN93 5.0 11.8 1.0

Reference:

E.J.Visser, P.Jaishankar, E.Sijbesma, M.A.M.Pennings, E.M.F.Vandenboorn, A.Renslo, M.R.Arkin, L.Brunsveld, C.Ottmann. Linked-Fragment Stabilizers of 14-3-3 Protein-Protein Interactions To Be Published.
Page generated: Thu Oct 3 19:56:41 2024

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