Magnesium in PDB 8c29: Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Enzymatic activity of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
All present enzymatic activity of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution:
1.10.3.9;
Other elements in 8c29:
The structure of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution also contains other interesting chemical elements:
Magnesium Binding Sites:
Pages:
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Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
130;
Page 14, Binding sites: 131 -
140;
Page 15, Binding sites: 141 -
150;
Page 16, Binding sites: 151 -
160;
Page 17, Binding sites: 161 -
170;
Page 18, Binding sites: 171 -
180;
Page 19, Binding sites: 181 -
190;
Page 20, Binding sites: 191 -
200;
Page 21, Binding sites: 201 -
206;
Binding sites:
The binding sites of Magnesium atom in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
(pdb code 8c29). This binding sites where shown within
5.0 Angstroms radius around Magnesium atom.
In total 206 binding sites of Magnesium where determined in the
Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution, PDB code: 8c29:
Jump to Magnesium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Magnesium binding site 1 out
of 206 in 8c29
Go back to
Magnesium Binding Sites List in 8c29
Magnesium binding site 1 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 1 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg402
b:48.3
occ:1.00
|
MG
|
A:CLA402
|
0.0
|
48.3
|
1.0
|
NB
|
A:CLA402
|
2.0
|
42.3
|
1.0
|
ND
|
A:CLA402
|
2.0
|
38.4
|
1.0
|
NA
|
A:CLA402
|
2.1
|
43.6
|
1.0
|
NC
|
A:CLA402
|
2.1
|
41.7
|
1.0
|
NE2
|
A:HIS198
|
2.4
|
22.3
|
1.0
|
C4D
|
A:CLA402
|
2.9
|
33.8
|
1.0
|
C1B
|
A:CLA402
|
3.0
|
40.6
|
1.0
|
C4A
|
A:CLA402
|
3.0
|
44.9
|
1.0
|
C4B
|
A:CLA402
|
3.1
|
41.3
|
1.0
|
C1C
|
A:CLA402
|
3.1
|
44.0
|
1.0
|
CE1
|
A:HIS198
|
3.1
|
16.9
|
1.0
|
C4C
|
A:CLA402
|
3.1
|
41.8
|
1.0
|
C1A
|
A:CLA402
|
3.2
|
49.1
|
1.0
|
C1D
|
A:CLA402
|
3.2
|
45.1
|
1.0
|
CHB
|
A:CLA402
|
3.4
|
45.2
|
1.0
|
CHC
|
A:CLA402
|
3.4
|
42.5
|
1.0
|
CHA
|
A:CLA402
|
3.5
|
46.8
|
1.0
|
CD2
|
A:HIS198
|
3.5
|
19.0
|
1.0
|
CHD
|
A:CLA402
|
3.5
|
46.3
|
1.0
|
CE
|
A:MET183
|
4.0
|
4.2
|
1.0
|
C3D
|
A:CLA402
|
4.3
|
38.3
|
1.0
|
C2B
|
A:CLA402
|
4.3
|
42.6
|
1.0
|
C3B
|
A:CLA402
|
4.3
|
40.8
|
1.0
|
ND1
|
A:HIS198
|
4.3
|
14.0
|
1.0
|
C2C
|
A:CLA402
|
4.3
|
48.3
|
1.0
|
C2D
|
A:CLA402
|
4.4
|
46.3
|
1.0
|
C3C
|
A:CLA402
|
4.4
|
42.8
|
1.0
|
C3A
|
A:CLA402
|
4.4
|
36.2
|
1.0
|
CAB
|
D:CLA405
|
4.4
|
41.2
|
1.0
|
C2A
|
A:CLA402
|
4.5
|
46.7
|
1.0
|
CG
|
A:HIS198
|
4.5
|
6.5
|
1.0
|
CBD
|
A:CLA402
|
4.9
|
43.1
|
1.0
|
CBB
|
D:CLA405
|
5.0
|
43.3
|
1.0
|
|
Magnesium binding site 2 out
of 206 in 8c29
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Magnesium Binding Sites List in 8c29
Magnesium binding site 2 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 2 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg403
b:50.5
occ:1.00
|
MG
|
A:CLA403
|
0.0
|
50.5
|
1.0
|
NB
|
A:CLA403
|
2.0
|
47.4
|
1.0
|
ND
|
A:CLA403
|
2.0
|
49.1
|
1.0
|
NC
|
A:CLA403
|
2.1
|
51.2
|
1.0
|
NA
|
A:CLA403
|
2.1
|
56.5
|
1.0
|
O
|
A:HOH507
|
2.9
|
28.4
|
1.0
|
C4D
|
A:CLA403
|
2.9
|
48.5
|
1.0
|
C1B
|
A:CLA403
|
3.0
|
42.0
|
1.0
|
C4A
|
A:CLA403
|
3.0
|
46.2
|
1.0
|
C4B
|
A:CLA403
|
3.1
|
46.4
|
1.0
|
C1C
|
A:CLA403
|
3.1
|
46.6
|
1.0
|
C4C
|
A:CLA403
|
3.1
|
49.0
|
1.0
|
C1A
|
A:CLA403
|
3.1
|
49.2
|
1.0
|
C1D
|
A:CLA403
|
3.2
|
43.6
|
1.0
|
CHB
|
A:CLA403
|
3.4
|
45.2
|
1.0
|
CHC
|
A:CLA403
|
3.4
|
46.9
|
1.0
|
CHA
|
A:CLA403
|
3.5
|
42.8
|
1.0
|
CHD
|
A:CLA403
|
3.5
|
45.6
|
1.0
|
CBB
|
A:PHO405
|
3.8
|
62.3
|
1.0
|
C3D
|
A:CLA403
|
4.3
|
43.5
|
1.0
|
C2B
|
A:CLA403
|
4.3
|
46.4
|
1.0
|
C3B
|
A:CLA403
|
4.3
|
44.2
|
1.0
|
C2C
|
A:CLA403
|
4.3
|
42.2
|
1.0
|
C2D
|
A:CLA403
|
4.4
|
37.2
|
1.0
|
C3C
|
A:CLA403
|
4.4
|
48.9
|
1.0
|
C3A
|
A:CLA403
|
4.4
|
42.2
|
1.0
|
C2A
|
A:CLA403
|
4.5
|
47.7
|
1.0
|
CBA
|
A:CLA403
|
4.8
|
49.8
|
1.0
|
CG2
|
A:THR179
|
4.9
|
11.9
|
1.0
|
CBD
|
A:CLA403
|
4.9
|
33.6
|
1.0
|
|
Magnesium binding site 3 out
of 206 in 8c29
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Magnesium Binding Sites List in 8c29
Magnesium binding site 3 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 3 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg404
b:40.6
occ:1.00
|
MG
|
A:CLA404
|
0.0
|
40.6
|
1.0
|
NB
|
A:CLA404
|
2.0
|
36.2
|
1.0
|
ND
|
A:CLA404
|
2.0
|
39.2
|
1.0
|
NA
|
A:CLA404
|
2.1
|
48.5
|
1.0
|
NC
|
A:CLA404
|
2.1
|
41.6
|
1.0
|
O
|
A:HOH518
|
2.8
|
28.6
|
1.0
|
C4D
|
A:CLA404
|
2.9
|
44.5
|
1.0
|
C1B
|
A:CLA404
|
3.0
|
43.2
|
1.0
|
C4A
|
A:CLA404
|
3.1
|
35.1
|
1.0
|
C4B
|
A:CLA404
|
3.1
|
37.1
|
1.0
|
C1C
|
A:CLA404
|
3.1
|
38.8
|
1.0
|
C4C
|
A:CLA404
|
3.1
|
42.3
|
1.0
|
C1A
|
A:CLA404
|
3.1
|
43.4
|
1.0
|
C1D
|
A:CLA404
|
3.2
|
35.4
|
1.0
|
CHB
|
A:CLA404
|
3.4
|
43.1
|
1.0
|
CHC
|
A:CLA404
|
3.4
|
43.9
|
1.0
|
CHA
|
A:CLA404
|
3.5
|
39.1
|
1.0
|
CHD
|
A:CLA404
|
3.5
|
40.1
|
1.0
|
CBB
|
D:PHO402
|
3.9
|
34.8
|
1.0
|
C3D
|
A:CLA404
|
4.3
|
39.0
|
1.0
|
C2B
|
A:CLA404
|
4.3
|
46.5
|
1.0
|
C3B
|
A:CLA404
|
4.3
|
41.5
|
1.0
|
C2C
|
A:CLA404
|
4.3
|
37.1
|
1.0
|
C2D
|
A:CLA404
|
4.4
|
30.0
|
1.0
|
CD1
|
D:ILE179
|
4.4
|
31.1
|
1.0
|
C3C
|
A:CLA404
|
4.4
|
42.0
|
1.0
|
C3A
|
A:CLA404
|
4.4
|
32.9
|
1.0
|
C2A
|
A:CLA404
|
4.5
|
44.5
|
1.0
|
CBA
|
A:CLA404
|
4.8
|
43.0
|
1.0
|
CBD
|
A:CLA404
|
4.9
|
36.8
|
1.0
|
|
Magnesium binding site 4 out
of 206 in 8c29
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Magnesium Binding Sites List in 8c29
Magnesium binding site 4 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 4 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Mg406
b:31.4
occ:1.00
|
MG
|
A:CLA406
|
0.0
|
31.4
|
1.0
|
NB
|
A:CLA406
|
2.0
|
35.2
|
1.0
|
ND
|
A:CLA406
|
2.0
|
27.2
|
1.0
|
NA
|
A:CLA406
|
2.1
|
29.5
|
1.0
|
NC
|
A:CLA406
|
2.1
|
23.2
|
1.0
|
NE2
|
A:HIS118
|
2.3
|
24.4
|
1.0
|
C4D
|
A:CLA406
|
2.9
|
24.3
|
1.0
|
C1B
|
A:CLA406
|
3.0
|
34.3
|
1.0
|
C4A
|
A:CLA406
|
3.0
|
23.1
|
1.0
|
C4B
|
A:CLA406
|
3.1
|
21.7
|
1.0
|
C1C
|
A:CLA406
|
3.1
|
26.3
|
1.0
|
CE1
|
A:HIS118
|
3.1
|
17.8
|
1.0
|
C4C
|
A:CLA406
|
3.1
|
25.9
|
1.0
|
C1A
|
A:CLA406
|
3.1
|
28.4
|
1.0
|
C1D
|
A:CLA406
|
3.2
|
24.1
|
1.0
|
CHB
|
A:CLA406
|
3.4
|
20.6
|
1.0
|
CHC
|
A:CLA406
|
3.4
|
23.0
|
1.0
|
CD2
|
A:HIS118
|
3.5
|
21.3
|
1.0
|
CHA
|
A:CLA406
|
3.5
|
26.4
|
1.0
|
CHD
|
A:CLA406
|
3.5
|
22.6
|
1.0
|
CG2
|
I:VAL12
|
4.2
|
26.1
|
1.0
|
C3D
|
A:CLA406
|
4.3
|
25.0
|
1.0
|
C2B
|
A:CLA406
|
4.3
|
33.1
|
1.0
|
C3B
|
A:CLA406
|
4.3
|
31.0
|
1.0
|
ND1
|
A:HIS118
|
4.3
|
15.0
|
1.0
|
C2C
|
A:CLA406
|
4.3
|
27.2
|
1.0
|
C2D
|
A:CLA406
|
4.4
|
29.9
|
1.0
|
C3C
|
A:CLA406
|
4.4
|
30.3
|
1.0
|
CG1
|
I:VAL8
|
4.4
|
25.0
|
1.0
|
C3A
|
A:CLA406
|
4.4
|
32.4
|
1.0
|
C2A
|
A:CLA406
|
4.5
|
27.1
|
1.0
|
CG
|
A:HIS118
|
4.5
|
16.0
|
1.0
|
CBA
|
A:CLA406
|
4.8
|
31.1
|
1.0
|
CBD
|
A:CLA406
|
4.9
|
24.1
|
1.0
|
|
Magnesium binding site 5 out
of 206 in 8c29
Go back to
Magnesium Binding Sites List in 8c29
Magnesium binding site 5 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 5 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg601
b:45.2
occ:1.00
|
MG
|
B:CLA601
|
0.0
|
45.2
|
1.0
|
NB
|
B:CLA601
|
2.0
|
39.2
|
1.0
|
ND
|
B:CLA601
|
2.0
|
37.8
|
1.0
|
NA
|
B:CLA601
|
2.1
|
43.7
|
1.0
|
NC
|
B:CLA601
|
2.1
|
37.6
|
1.0
|
C4D
|
B:CLA601
|
2.9
|
39.8
|
1.0
|
C1B
|
B:CLA601
|
3.0
|
39.1
|
1.0
|
C4A
|
B:CLA601
|
3.0
|
42.3
|
1.0
|
C4B
|
B:CLA601
|
3.1
|
34.5
|
1.0
|
C1C
|
B:CLA601
|
3.1
|
33.1
|
1.0
|
C4C
|
B:CLA601
|
3.1
|
37.8
|
1.0
|
C1A
|
B:CLA601
|
3.2
|
40.1
|
1.0
|
C1D
|
B:CLA601
|
3.2
|
37.2
|
1.0
|
CHB
|
B:CLA601
|
3.4
|
35.7
|
1.0
|
CHC
|
B:CLA601
|
3.4
|
31.9
|
1.0
|
CHA
|
B:CLA601
|
3.5
|
36.9
|
1.0
|
CHD
|
B:CLA601
|
3.5
|
41.4
|
1.0
|
C7
|
B:LNL624
|
3.9
|
40.5
|
1.0
|
C8
|
B:LNL624
|
3.9
|
39.7
|
1.0
|
O
|
B:TRP185
|
4.2
|
40.5
|
1.0
|
C3D
|
B:CLA601
|
4.3
|
41.8
|
1.0
|
C2B
|
B:CLA601
|
4.3
|
38.8
|
1.0
|
C3B
|
B:CLA601
|
4.3
|
37.5
|
1.0
|
C2C
|
B:CLA601
|
4.3
|
37.8
|
1.0
|
C2D
|
B:CLA601
|
4.4
|
36.3
|
1.0
|
C3C
|
B:CLA601
|
4.4
|
34.6
|
1.0
|
C3A
|
B:CLA601
|
4.4
|
35.5
|
1.0
|
C9
|
B:LNL624
|
4.4
|
45.8
|
1.0
|
C6
|
B:LNL624
|
4.5
|
46.6
|
1.0
|
C2A
|
B:CLA601
|
4.5
|
38.6
|
1.0
|
CE2
|
B:PHE190
|
4.6
|
25.5
|
1.0
|
CBB
|
B:CLA602
|
4.8
|
36.7
|
1.0
|
CBD
|
B:CLA601
|
4.9
|
34.5
|
1.0
|
|
Magnesium binding site 6 out
of 206 in 8c29
Go back to
Magnesium Binding Sites List in 8c29
Magnesium binding site 6 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 6 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg602
b:45.0
occ:1.00
|
MG
|
B:CLA602
|
0.0
|
45.0
|
1.0
|
NB
|
B:CLA602
|
2.0
|
29.0
|
1.0
|
ND
|
B:CLA602
|
2.0
|
21.3
|
1.0
|
NC
|
B:CLA602
|
2.1
|
30.0
|
1.0
|
NA
|
B:CLA602
|
2.1
|
30.6
|
1.0
|
ND1
|
B:HIS201
|
2.4
|
32.0
|
1.0
|
C4D
|
B:CLA602
|
2.9
|
28.5
|
1.0
|
CE1
|
B:HIS201
|
3.0
|
29.0
|
1.0
|
C1B
|
B:CLA602
|
3.0
|
28.8
|
1.0
|
C4A
|
B:CLA602
|
3.0
|
27.5
|
1.0
|
C4B
|
B:CLA602
|
3.1
|
26.8
|
1.0
|
C1C
|
B:CLA602
|
3.1
|
26.7
|
1.0
|
C4C
|
B:CLA602
|
3.1
|
29.1
|
1.0
|
C1A
|
B:CLA602
|
3.2
|
30.6
|
1.0
|
C1D
|
B:CLA602
|
3.2
|
23.6
|
1.0
|
CHB
|
B:CLA602
|
3.4
|
24.5
|
1.0
|
CHC
|
B:CLA602
|
3.4
|
28.1
|
1.0
|
CHA
|
B:CLA602
|
3.5
|
27.1
|
1.0
|
CHD
|
B:CLA602
|
3.5
|
26.9
|
1.0
|
CG
|
B:HIS201
|
3.6
|
18.6
|
1.0
|
CZ
|
H:PHE53
|
3.7
|
34.6
|
1.0
|
CE2
|
H:PHE53
|
4.1
|
31.2
|
1.0
|
CB
|
B:HIS201
|
4.1
|
19.1
|
1.0
|
NE2
|
B:HIS201
|
4.2
|
8.1
|
1.0
|
C3D
|
B:CLA602
|
4.3
|
32.5
|
1.0
|
C2B
|
B:CLA602
|
4.3
|
28.2
|
1.0
|
C3B
|
B:CLA602
|
4.3
|
30.1
|
1.0
|
C2C
|
B:CLA602
|
4.3
|
29.0
|
1.0
|
C2D
|
B:CLA602
|
4.4
|
27.3
|
1.0
|
C3C
|
B:CLA602
|
4.4
|
32.0
|
1.0
|
C3A
|
B:CLA602
|
4.4
|
32.5
|
1.0
|
C2A
|
B:CLA602
|
4.5
|
33.6
|
1.0
|
CD2
|
B:HIS201
|
4.5
|
5.1
|
1.0
|
CE1
|
B:PHE190
|
4.7
|
29.2
|
1.0
|
CE1
|
H:PHE53
|
4.8
|
32.7
|
1.0
|
CA
|
B:HIS201
|
4.8
|
14.2
|
1.0
|
CBD
|
B:CLA602
|
4.9
|
22.1
|
1.0
|
|
Magnesium binding site 7 out
of 206 in 8c29
Go back to
Magnesium Binding Sites List in 8c29
Magnesium binding site 7 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 7 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg603
b:53.3
occ:1.00
|
MG
|
B:CLA603
|
0.0
|
53.3
|
1.0
|
NB
|
B:CLA603
|
2.0
|
44.4
|
1.0
|
ND
|
B:CLA603
|
2.0
|
41.8
|
1.0
|
NC
|
B:CLA603
|
2.1
|
45.7
|
1.0
|
NA
|
B:CLA603
|
2.1
|
46.0
|
1.0
|
NE2
|
B:HIS202
|
2.4
|
31.2
|
1.0
|
C4D
|
B:CLA603
|
2.9
|
37.8
|
1.0
|
C1B
|
B:CLA603
|
3.0
|
46.7
|
1.0
|
C4A
|
B:CLA603
|
3.0
|
37.4
|
1.0
|
C4B
|
B:CLA603
|
3.1
|
43.0
|
1.0
|
C1C
|
B:CLA603
|
3.1
|
45.2
|
1.0
|
C4C
|
B:CLA603
|
3.1
|
44.1
|
1.0
|
C1A
|
B:CLA603
|
3.2
|
52.2
|
1.0
|
C1D
|
B:CLA603
|
3.2
|
39.9
|
1.0
|
CE1
|
B:HIS202
|
3.3
|
22.0
|
1.0
|
CHB
|
B:CLA603
|
3.4
|
41.1
|
1.0
|
CD2
|
B:HIS202
|
3.4
|
25.1
|
1.0
|
CHC
|
B:CLA603
|
3.4
|
41.5
|
1.0
|
CHA
|
B:CLA603
|
3.5
|
44.8
|
1.0
|
CHD
|
B:CLA603
|
3.5
|
39.5
|
1.0
|
C9
|
B:CLA605
|
4.1
|
44.5
|
1.0
|
C6
|
B:CLA605
|
4.1
|
45.4
|
1.0
|
C3D
|
B:CLA603
|
4.3
|
39.0
|
1.0
|
C2B
|
B:CLA603
|
4.3
|
39.9
|
1.0
|
C3B
|
B:CLA603
|
4.3
|
42.5
|
1.0
|
C2C
|
B:CLA603
|
4.3
|
48.5
|
1.0
|
C2D
|
B:CLA603
|
4.4
|
39.4
|
1.0
|
C3C
|
B:CLA603
|
4.4
|
47.8
|
1.0
|
C3A
|
B:CLA603
|
4.4
|
40.6
|
1.0
|
ND1
|
B:HIS202
|
4.4
|
8.8
|
1.0
|
C2A
|
B:CLA603
|
4.5
|
51.3
|
1.0
|
C7
|
B:CLA605
|
4.5
|
42.2
|
1.0
|
CG
|
B:HIS202
|
4.5
|
20.1
|
1.0
|
C8
|
B:CLA605
|
4.8
|
44.6
|
1.0
|
CBA
|
B:CLA603
|
4.9
|
40.4
|
1.0
|
CBD
|
B:CLA603
|
4.9
|
40.2
|
1.0
|
|
Magnesium binding site 8 out
of 206 in 8c29
Go back to
Magnesium Binding Sites List in 8c29
Magnesium binding site 8 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 8 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg604
b:52.9
occ:1.00
|
MG
|
B:CLA604
|
0.0
|
52.9
|
1.0
|
NB
|
B:CLA604
|
2.0
|
41.0
|
1.0
|
ND
|
B:CLA604
|
2.0
|
42.9
|
1.0
|
NC
|
B:CLA604
|
2.1
|
44.7
|
1.0
|
NA
|
B:CLA604
|
2.1
|
46.1
|
1.0
|
NE2
|
B:HIS455
|
2.4
|
33.0
|
1.0
|
C4D
|
B:CLA604
|
2.9
|
39.9
|
1.0
|
C1B
|
B:CLA604
|
3.0
|
40.0
|
1.0
|
C4A
|
B:CLA604
|
3.0
|
45.7
|
1.0
|
C4B
|
B:CLA604
|
3.1
|
42.5
|
1.0
|
C1C
|
B:CLA604
|
3.1
|
42.1
|
1.0
|
C4C
|
B:CLA604
|
3.1
|
45.6
|
1.0
|
C1A
|
B:CLA604
|
3.2
|
45.0
|
1.0
|
C1D
|
B:CLA604
|
3.2
|
42.1
|
1.0
|
CE1
|
B:HIS455
|
3.3
|
26.7
|
1.0
|
CD2
|
B:HIS455
|
3.4
|
27.2
|
1.0
|
CHB
|
B:CLA604
|
3.4
|
44.5
|
1.0
|
CHC
|
B:CLA604
|
3.4
|
42.6
|
1.0
|
CHA
|
B:CLA604
|
3.5
|
46.8
|
1.0
|
CHD
|
B:CLA604
|
3.5
|
44.7
|
1.0
|
C14
|
B:CLA612
|
3.7
|
45.7
|
1.0
|
C3D
|
B:CLA604
|
4.3
|
42.7
|
1.0
|
C2B
|
B:CLA604
|
4.3
|
44.9
|
1.0
|
C3B
|
B:CLA604
|
4.3
|
46.4
|
1.0
|
C2C
|
B:CLA604
|
4.3
|
43.1
|
1.0
|
C2D
|
B:CLA604
|
4.4
|
40.7
|
1.0
|
C3C
|
B:CLA604
|
4.4
|
44.9
|
1.0
|
C13
|
B:CLA612
|
4.4
|
42.4
|
1.0
|
ND1
|
B:HIS455
|
4.4
|
23.1
|
1.0
|
C3A
|
B:CLA604
|
4.4
|
42.9
|
1.0
|
C15
|
B:CLA612
|
4.4
|
50.3
|
1.0
|
C2A
|
B:CLA604
|
4.5
|
41.4
|
1.0
|
CG
|
B:HIS455
|
4.5
|
24.8
|
1.0
|
CAB
|
B:CLA613
|
4.9
|
46.5
|
1.0
|
CBD
|
B:CLA604
|
4.9
|
42.5
|
1.0
|
|
Magnesium binding site 9 out
of 206 in 8c29
Go back to
Magnesium Binding Sites List in 8c29
Magnesium binding site 9 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 9 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg605
b:49.8
occ:1.00
|
MG
|
B:CLA605
|
0.0
|
49.8
|
1.0
|
NB
|
B:CLA605
|
2.0
|
46.7
|
1.0
|
ND
|
B:CLA605
|
2.0
|
39.5
|
1.0
|
NC
|
B:CLA605
|
2.1
|
42.5
|
1.0
|
NA
|
B:CLA605
|
2.1
|
48.9
|
1.0
|
NE2
|
B:HIS100
|
2.4
|
28.1
|
1.0
|
C4D
|
B:CLA605
|
2.9
|
41.1
|
1.0
|
C1B
|
B:CLA605
|
3.0
|
44.1
|
1.0
|
C4A
|
B:CLA605
|
3.1
|
39.8
|
1.0
|
C4B
|
B:CLA605
|
3.1
|
44.4
|
1.0
|
C1C
|
B:CLA605
|
3.1
|
41.2
|
1.0
|
C4C
|
B:CLA605
|
3.1
|
47.9
|
1.0
|
CE1
|
B:HIS100
|
3.1
|
24.9
|
1.0
|
C1A
|
B:CLA605
|
3.1
|
47.4
|
1.0
|
C1D
|
B:CLA605
|
3.2
|
38.1
|
1.0
|
CHB
|
B:CLA605
|
3.4
|
41.3
|
1.0
|
CHC
|
B:CLA605
|
3.4
|
41.4
|
1.0
|
CHA
|
B:CLA605
|
3.5
|
41.2
|
1.0
|
CHD
|
B:CLA605
|
3.5
|
46.9
|
1.0
|
CD2
|
B:HIS100
|
3.6
|
23.9
|
1.0
|
C4
|
B:CLA604
|
4.0
|
46.1
|
1.0
|
C1
|
B:CLA604
|
4.0
|
52.8
|
1.0
|
C3D
|
B:CLA605
|
4.3
|
49.6
|
1.0
|
C2B
|
B:CLA605
|
4.3
|
39.0
|
1.0
|
C3B
|
B:CLA605
|
4.3
|
46.2
|
1.0
|
C2C
|
B:CLA605
|
4.3
|
42.8
|
1.0
|
C2D
|
B:CLA605
|
4.4
|
48.2
|
1.0
|
ND1
|
B:HIS100
|
4.4
|
12.7
|
1.0
|
C3C
|
B:CLA605
|
4.4
|
43.5
|
1.0
|
C3
|
B:CLA604
|
4.4
|
48.0
|
1.0
|
C3A
|
B:CLA605
|
4.4
|
40.8
|
1.0
|
C2
|
B:CLA604
|
4.4
|
45.5
|
1.0
|
C2A
|
B:CLA605
|
4.5
|
46.9
|
1.0
|
CG
|
B:HIS100
|
4.6
|
20.0
|
1.0
|
CBD
|
B:CLA605
|
4.9
|
40.1
|
1.0
|
CBA
|
B:CLA605
|
5.0
|
47.9
|
1.0
|
|
Magnesium binding site 10 out
of 206 in 8c29
Go back to
Magnesium Binding Sites List in 8c29
Magnesium binding site 10 out
of 206 in the Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution
Mono view
Stereo pair view
|
A full contact list of Magnesium with other atoms in the Mg binding
site number 10 of Cryo-Em Structure of Photosystem II C2S2 Supercomplex From Norway Spruce (Picea Abies) at 2.8 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Mg606
b:38.8
occ:1.00
|
MG
|
B:CLA606
|
0.0
|
38.8
|
1.0
|
NB
|
B:CLA606
|
2.0
|
33.0
|
1.0
|
ND
|
B:CLA606
|
2.0
|
40.3
|
1.0
|
NC
|
B:CLA606
|
2.1
|
39.9
|
1.0
|
NA
|
B:CLA606
|
2.1
|
40.5
|
1.0
|
ND1
|
B:HIS157
|
2.5
|
30.7
|
1.0
|
C4D
|
B:CLA606
|
2.9
|
38.1
|
1.0
|
C1B
|
B:CLA606
|
3.0
|
32.4
|
1.0
|
C4A
|
B:CLA606
|
3.0
|
35.4
|
1.0
|
C1C
|
B:CLA606
|
3.1
|
38.3
|
1.0
|
C4B
|
B:CLA606
|
3.1
|
28.7
|
1.0
|
CE1
|
B:HIS157
|
3.1
|
33.5
|
1.0
|
C4C
|
B:CLA606
|
3.1
|
30.2
|
1.0
|
C1A
|
B:CLA606
|
3.1
|
41.2
|
1.0
|
C1D
|
B:CLA606
|
3.2
|
33.7
|
1.0
|
CHB
|
B:CLA606
|
3.4
|
38.5
|
1.0
|
CHC
|
B:CLA606
|
3.4
|
33.0
|
1.0
|
C11
|
B:PAM621
|
3.4
|
25.1
|
1.0
|
CHA
|
B:CLA606
|
3.5
|
35.5
|
1.0
|
CHD
|
B:CLA606
|
3.5
|
24.6
|
1.0
|
CG
|
B:HIS157
|
3.8
|
26.7
|
1.0
|
C13
|
B:PAM621
|
3.9
|
22.6
|
1.0
|
C12
|
B:PAM621
|
4.2
|
24.3
|
1.0
|
C3D
|
B:CLA606
|
4.3
|
39.2
|
1.0
|
C2B
|
B:CLA606
|
4.3
|
34.1
|
1.0
|
CB
|
B:HIS157
|
4.3
|
18.4
|
1.0
|
C3B
|
B:CLA606
|
4.3
|
34.8
|
1.0
|
C2C
|
B:CLA606
|
4.3
|
27.3
|
1.0
|
NE2
|
B:HIS157
|
4.3
|
20.9
|
1.0
|
C3C
|
B:CLA606
|
4.4
|
29.6
|
1.0
|
C2D
|
B:CLA606
|
4.4
|
35.8
|
1.0
|
C3A
|
B:CLA606
|
4.4
|
33.7
|
1.0
|
C2A
|
B:CLA606
|
4.5
|
34.2
|
1.0
|
C10
|
B:PAM621
|
4.6
|
33.1
|
1.0
|
CD2
|
B:HIS157
|
4.7
|
16.6
|
1.0
|
CBA
|
B:CLA606
|
4.9
|
25.0
|
1.0
|
CBD
|
B:CLA606
|
4.9
|
28.4
|
1.0
|
|
Reference:
M.Opatikova,
D.A.Semchonok,
D.Kopecny,
P.Ilik,
P.Pospisil,
I.Ilikova,
P.Roudnicky,
S.C.Zeljkovic,
P.Tarkowski,
F.L.Kyrilis,
F.Hamdi,
P.L.Kastritis,
R.Kouril.
Cryo-Em Structure of A Plant Photosystem II Supercomplex with Light-Harvesting Protein LHCB8 and Alpha-Tocopherol Nat.Plants 2023.
ISSN: ESSN 2055-0278
DOI: 10.1038/S41477-023-01483-0
Page generated: Thu Oct 3 20:05:04 2024
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