Magnesium in PDB 8c4c: F-Actin Decorated By SIPA497-669

The binding sites of Magnesium atom in the F-Actin Decorated By SIPA497-669 (pdb code 8c4c). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the F-Actin Decorated By SIPA497-669, PDB code: 8c4c:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the F-Actin Decorated By SIPA497-669


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F-Actin Decorated By SIPA497-669 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:54.3 occ:1.00 O1B A:ADP401 1.9 70.2 1.0 O2 A:PO4402 2.5 95.3 1.0 O1A A:ADP401 3.1 67.0 1.0 PB A:ADP401 3.2 60.6 1.0 HZ1 A:LYS18 3.4 61.0 1.0 HA3 A:GLY156 3.4 59.5 1.0 O3A A:ADP401 3.5 64.0 1.0 HG21 A:VAL339 3.8 55.1 1.0 PA A:ADP401 3.8 61.0 1.0 P A:PO4402 3.8 108.7 1.0 OD1 A:ASP154 3.9 69.5 1.0 HA2 A:GLY301 3.9 56.2 1.0 O3B A:ADP401 4.0 67.1 1.0 HA2 A:GLY156 4.1 58.5 1.0 CA A:GLY156 4.2 57.3 1.0 NZ A:LYS18 4.2 61.7 1.0 HZ2 A:LYS18 4.2 60.9 1.0 O1 A:PO4402 4.2 95.7 1.0 OE1 A:GLN137 4.3 69.2 1.0 O3 A:PO4402 4.3 90.2 1.0 HA2 A:GLY13 4.4 71.4 1.0 O2B A:ADP401 4.4 64.6 1.0 HA3 A:GLY301 4.5 56.5 1.0 HB A:VAL339 4.6 55.1 1.0 CD A:GLN137 4.6 64.2 1.0 O2A A:ADP401 4.7 64.5 1.0 H A:GLY302 4.7 60.8 1.0 HZ3 A:LYS18 4.7 61.2 1.0 CA A:GLY301 4.7 54.4 1.0 N A:GLY156 4.7 54.9 1.0 CG2 A:VAL339 4.7 51.4 1.0 HE3 A:LYS18 4.8 61.3 1.0 H A:GLY156 4.8 58.7 1.0 HG12 A:VAL339 4.9 55.3 1.0 HA3 A:GLY13 4.9 71.9 1.0 H A:ASP157 4.9 65.8 1.0 HB3 A:GLN137 4.9 60.9 1.0 CG A:ASP154 4.9 67.9 1.0 HE22 A:GLN137 4.9 62.8 1.0 NE2 A:GLN137 5.0 68.7 1.0 O4 A:PO4402 5.0 94.2 1.0

Magnesium binding site 2 out of 8 in the F-Actin Decorated By SIPA497-669


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F-Actin Decorated By SIPA497-669 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg403 b:50.7 occ:1.00 O1B B:ADP402 1.9 65.2 1.0 O2 B:PO4401 2.0 92.8 1.0 HZ3 B:LYS18 3.2 53.5 1.0 PB B:ADP402 3.2 45.7 1.0 P B:PO4401 3.5 104.3 1.0 HA3 B:GLY156 3.6 49.0 1.0 O1A B:ADP402 3.6 55.2 1.0 O3B B:ADP402 3.7 58.5 1.0 O3A B:ADP402 3.7 55.1 1.0 OD2 B:ASP11 3.8 60.2 1.0 HA2 B:GLY13 3.9 62.8 1.0 NZ B:LYS18 4.0 56.3 1.0 HG22 B:VAL339 4.1 49.5 1.0 O1 B:PO4401 4.1 91.2 1.0 HA3 B:GLY13 4.2 63.8 1.0 PA B:ADP402 4.2 49.6 1.0 OD1 B:ASP11 4.3 70.1 1.0 HZ1 B:LYS18 4.3 53.3 1.0 OD1 B:ASP154 4.3 64.2 1.0 O4 B:PO4401 4.3 85.4 1.0 O3 B:PO4401 4.4 82.2 1.0 O2B B:ADP402 4.4 52.4 1.0 CA B:GLY156 4.5 46.6 1.0 HA2 B:GLY156 4.5 48.9 1.0 CG B:ASP11 4.5 64.2 1.0 HZ2 B:LYS18 4.5 52.5 1.0 HA2 B:GLY301 4.5 48.1 1.0 CA B:GLY13 4.5 63.2 1.0 HG12 B:VAL339 4.6 49.2 1.0 CD B:GLN137 4.6 57.2 1.0 OE1 B:GLN137 4.6 60.4 1.0 HB B:VAL339 4.6 50.1 1.0 NE2 B:GLN137 4.6 61.5 1.0 HE22 B:GLN137 4.6 57.0 1.0 HE3 B:LYS18 4.7 52.3 1.0 HG2 B:GLN137 4.7 56.0 1.0 CE B:LYS18 4.8 51.7 1.0 HE2 B:LYS18 4.8 53.3 1.0 O2A B:ADP402 4.8 57.4 1.0 HB3 B:GLN137 4.9 56.0 1.0 CG2 B:VAL339 4.9 47.5 1.0 H B:SER14 4.9 58.6 1.0 HE21 B:GLN137 5.0 56.8 1.0 N B:GLY156 5.0 43.7 1.0 H B:ASP157 5.0 56.3 1.0

Magnesium binding site 3 out of 8 in the F-Actin Decorated By SIPA497-669


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F-Actin Decorated By SIPA497-669 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:42.3 occ:1.00 O1B C:ADP401 1.9 65.8 1.0 O2 C:PO4403 2.2 88.3 1.0 HZ2 C:LYS18 3.2 51.0 1.0 PB C:ADP401 3.2 45.0 1.0 O1A C:ADP401 3.3 55.3 1.0 O3A C:ADP401 3.5 49.3 1.0 HA3 C:GLY156 3.6 52.3 1.0 P C:PO4403 3.7 102.2 1.0 HZ1 C:LYS18 3.7 51.3 1.0 NZ C:LYS18 3.8 52.2 1.0 HZ3 C:LYS18 3.8 51.0 1.0 PA C:ADP401 3.9 44.5 1.0 HG21 C:VAL339 3.9 50.1 1.0 O3B C:ADP401 3.9 53.5 1.0 OD2 C:ASP11 4.1 57.6 1.0 OD1 C:ASP154 4.1 62.8 1.0 HA3 C:GLY13 4.1 58.3 1.0 HA2 C:GLY301 4.1 49.9 1.0 O1 C:PO4403 4.4 93.0 1.0 HA2 C:GLY156 4.4 51.1 1.0 O3 C:PO4403 4.4 83.8 1.0 CA C:GLY156 4.4 50.8 1.0 O2B C:ADP401 4.4 55.8 1.0 O4 C:PO4403 4.5 83.9 1.0 OE1 C:GLN137 4.5 62.9 1.0 HB C:VAL339 4.6 51.0 1.0 OD1 C:ASP11 4.6 63.0 1.0 O2A C:ADP401 4.6 57.4 1.0 HA3 C:GLY301 4.7 49.8 1.0 HA2 C:GLY13 4.7 57.1 1.0 CD C:GLN137 4.8 61.1 1.0 CG C:ASP11 4.8 59.6 1.0 CG2 C:VAL339 4.8 45.6 1.0 CA C:GLY13 4.9 57.5 1.0 HG12 C:VAL339 4.9 50.3 1.0 CA C:GLY301 4.9 48.6 1.0 HE22 C:GLN137 4.9 56.9 1.0 H C:GLY302 4.9 52.1 1.0 N C:GLY156 4.9 45.7 1.0 NE2 C:GLN137 5.0 64.0 1.0 H C:ASP157 5.0 55.5 1.0

Magnesium binding site 4 out of 8 in the F-Actin Decorated By SIPA497-669


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F-Actin Decorated By SIPA497-669 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg801 b:44.1 occ:1.00 O1B D:ADP802 1.9 68.4 1.0 O2 D:PO4803 2.5 90.2 1.0 PB D:ADP802 3.2 50.9 1.0 O1A D:ADP802 3.3 58.5 1.0 HA3 D:GLY156 3.4 52.4 1.0 HZ1 D:LYS18 3.5 52.4 1.0 O3A D:ADP802 3.6 52.2 1.0 HA2 D:GLY301 3.9 51.2 1.0 HG21 D:VAL339 3.9 49.1 1.0 P D:PO4803 4.0 106.2 1.0 PA D:ADP802 4.0 50.2 1.0 O3B D:ADP802 4.0 48.2 1.0 OD2 D:ASP154 4.0 66.6 1.0 HA2 D:GLY156 4.1 52.6 1.0 CA D:GLY156 4.2 51.5 1.0 HA3 D:GLY13 4.3 59.7 1.0 OD1 D:ASP154 4.3 62.5 1.0 NZ D:LYS18 4.3 49.0 1.0 O2B D:ADP802 4.4 56.0 1.0 HA3 D:GLY301 4.4 51.2 1.0 OD2 D:ASP11 4.4 65.4 1.0 HZ2 D:LYS18 4.4 52.7 1.0 HB D:VAL339 4.5 50.0 1.0 O3 D:PO4803 4.6 89.6 1.0 O1 D:PO4803 4.6 89.9 1.0 CG D:ASP154 4.6 63.2 1.0 CA D:GLY301 4.6 49.2 1.0 HE3 D:LYS18 4.6 51.6 1.0 OE1 D:GLN137 4.6 62.4 1.0 OD1 D:ASP11 4.7 65.2 1.0 N D:GLY156 4.7 50.1 1.0 CD D:GLN137 4.7 58.2 1.0 O2A D:ADP802 4.7 58.2 1.0 HE22 D:GLN137 4.8 57.4 1.0 HG12 D:VAL339 4.8 48.6 1.0 H D:GLY302 4.8 51.7 1.0 NE2 D:GLN137 4.8 66.8 1.0 CG2 D:VAL339 4.8 46.3 1.0 H D:GLY156 4.8 51.9 1.0 O4 D:PO4803 4.9 92.4 1.0 HB3 D:GLN137 4.9 56.1 1.0 H D:ASP157 4.9 57.3 1.0 HZ3 D:LYS18 4.9 52.1 1.0 CE D:LYS18 5.0 49.9 1.0 CG D:ASP11 5.0 64.2 1.0 HG2 D:GLN137 5.0 55.5 1.0

Magnesium binding site 5 out of 8 in the F-Actin Decorated By SIPA497-669


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F-Actin Decorated By SIPA497-669 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg801 b:43.0 occ:1.00 O1B E:ADP802 1.9 67.2 1.0 O2 E:PO4803 2.7 89.2 1.0 O1A E:ADP802 3.0 53.7 1.0 PB E:ADP802 3.2 50.9 1.0 HA3 E:GLY156 3.2 51.6 1.0 O3A E:ADP802 3.5 51.6 1.0 HZ1 E:LYS18 3.6 52.6 1.0 HA2 E:GLY301 3.7 49.6 1.0 PA E:ADP802 3.8 38.5 1.0 HA2 E:GLY156 3.8 50.8 1.0 O3B E:ADP802 3.9 55.7 1.0 CA E:GLY156 3.9 48.9 1.0 P E:PO4803 4.0 108.7 1.0 HG21 E:VAL339 4.0 47.1 1.0 OD1 E:ASP154 4.1 64.4 1.0 HA3 E:GLY301 4.1 50.6 1.0 O1 E:PO4803 4.2 94.6 1.0 HZ2 E:LYS18 4.2 53.4 1.0 NZ E:LYS18 4.3 53.8 1.0 H E:GLY302 4.3 53.2 1.0 CA E:GLY301 4.4 49.5 1.0 O2B E:ADP802 4.4 47.5 1.0 N E:GLY156 4.4 51.7 1.0 HA3 E:GLY13 4.5 61.8 1.0 OD2 E:ASP11 4.5 66.0 1.0 O2A E:ADP802 4.6 54.1 1.0 H E:GLY156 4.7 51.4 1.0 HE3 E:LYS18 4.7 52.6 1.0 O3 E:PO4803 4.7 86.8 1.0 OD2 E:ASP154 4.7 71.9 1.0 HB E:VAL339 4.7 47.9 1.0 CG E:ASP154 4.8 62.1 1.0 H E:ASP157 4.8 56.6 1.0 OE1 E:GLN137 4.9 60.7 1.0 CG2 E:VAL339 4.9 44.8 1.0 HZ3 E:LYS18 4.9 52.5 1.0 HA2 E:GLY13 5.0 60.9 1.0 C E:SER155 5.0 51.9 1.0

Magnesium binding site 6 out of 8 in the F-Actin Decorated By SIPA497-669


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of F-Actin Decorated By SIPA497-669 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg801 b:37.7 occ:1.00 O1B F:ADP802 1.9 63.6 1.0 O2 F:PO4803 2.7 86.4 1.0 PB F:ADP802 3.2 51.0 1.0 O3A F:ADP802 3.4 56.0 1.0 HZ2 F:LYS18 3.4 48.5 1.0 HA3 F:GLY156 3.6 48.3 1.0 O1A F:ADP802 3.6 53.8 1.0 OD1 F:ASP154 3.8 65.0 1.0 O3B F:ADP802 3.9 56.4 1.0 HG21 F:VAL339 3.9 47.5 1.0 HZ3 F:LYS18 4.0 48.4 1.0 NZ F:LYS18 4.0 45.4 1.0 HZ1 F:LYS18 4.0 47.3 1.0 OD2 F:ASP11 4.1 53.9 1.0 P F:PO4803 4.1 102.6 1.0 PA F:ADP802 4.1 43.8 1.0 HA2 F:GLY301 4.1 47.5 1.0 HA2 F:GLY156 4.3 48.0 1.0 HA3 F:GLY13 4.3 56.6 1.0 CA F:GLY156 4.3 46.2 1.0 O2B F:ADP802 4.4 42.5 1.0 O1 F:PO4803 4.4 91.5 1.0 OE1 F:GLN137 4.4 59.1 1.0 HA2 F:GLY13 4.6 55.0 1.0 OD1 F:ASP11 4.6 62.9 1.0 HB F:VAL339 4.6 47.5 1.0 CD F:GLN137 4.6 57.7 1.0 HA3 F:GLY301 4.6 47.9 1.0 HG12 F:VAL339 4.7 47.0 1.0 CG F:ASP154 4.7 60.0 1.0 HE22 F:GLN137 4.8 56.3 1.0 CG F:ASP11 4.8 59.9 1.0 CG2 F:VAL339 4.8 46.3 1.0 NE2 F:GLN137 4.8 64.1 1.0 OD2 F:ASP154 4.8 67.7 1.0 HB3 F:GLN137 4.8 55.0 1.0 O2A F:ADP802 4.8 53.8 1.0 N F:GLY156 4.8 45.2 1.0 CA F:GLY301 4.9 43.0 1.0 CA F:GLY13 4.9 57.9 1.0 O4 F:PO4803 4.9 87.3 1.0 HG2 F:GLN137 4.9 55.1 1.0 H F:GLY156 5.0 48.2 1.0 O3 F:PO4803 5.0 81.4 1.0 HG23 F:VAL339 5.0 47.3 1.0

Magnesium binding site 7 out of 8 in the F-Actin Decorated By SIPA497-669


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of F-Actin Decorated By SIPA497-669 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg403 b:47.0 occ:1.00 O1B G:ADP402 1.9 65.9 1.0 O2 G:PO4401 2.2 89.0 1.0 PB G:ADP402 3.3 51.7 1.0 HZ1 G:LYS18 3.4 52.4 1.0 O1A G:ADP402 3.6 55.1 1.0 P G:PO4401 3.7 110.6 1.0 HG21 G:VAL339 3.7 49.9 1.0 OD2 G:ASP154 3.8 59.5 1.0 HA3 G:GLY156 3.8 50.5 1.0 O3A G:ADP402 3.8 58.7 1.0 O3B G:ADP402 4.0 56.4 1.0 OD2 G:ASP11 4.1 67.7 1.0 OE1 G:GLN137 4.1 60.0 1.0 O1 G:PO4401 4.1 97.4 1.0 NZ G:LYS18 4.2 52.9 1.0 PA G:ADP402 4.2 49.3 1.0 HA3 G:GLY13 4.2 62.0 1.0 HA2 G:GLY301 4.3 49.8 1.0 HZ2 G:LYS18 4.3 52.8 1.0 OD1 G:ASP154 4.4 63.4 1.0 O3 G:PO4401 4.4 88.2 1.0 O2B G:ADP402 4.4 48.0 1.0 CD G:GLN137 4.4 57.2 1.0 HB G:VAL339 4.5 50.6 1.0 HA2 G:GLY13 4.5 60.3 1.0 OD1 G:ASP11 4.5 66.7 1.0 CG G:ASP154 4.5 57.8 1.0 CG2 G:VAL339 4.6 47.8 1.0 HE22 G:GLN137 4.6 56.4 1.0 HG12 G:VAL339 4.6 50.3 1.0 O4 G:PO4401 4.6 94.2 1.0 CA G:GLY156 4.7 42.4 1.0 NE2 G:GLN137 4.7 63.5 1.0 HB3 G:GLN137 4.7 53.9 1.0 HZ3 G:LYS18 4.7 52.0 1.0 CG G:ASP11 4.7 66.0 1.0 HE3 G:LYS18 4.7 52.0 1.0 HA3 G:GLY301 4.8 49.9 1.0 HA2 G:GLY156 4.8 50.7 1.0 CA G:GLY13 4.8 61.9 1.0 HG23 G:VAL339 4.9 50.1 1.0 HG2 G:GLN137 4.9 53.9 1.0 O2A G:ADP402 4.9 55.0 1.0 CB G:VAL339 5.0 47.0 1.0 CE G:LYS18 5.0 50.8 1.0 CA G:GLY301 5.0 44.9 1.0

Magnesium binding site 8 out of 8 in the F-Actin Decorated By SIPA497-669


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of F-Actin Decorated By SIPA497-669 within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg801 b:51.0 occ:1.00 O1B H:ADP803 2.0 71.4 1.0 O2 H:PO4802 2.3 95.5 1.0 O1A H:ADP803 3.2 70.7 1.0 PB H:ADP803 3.2 62.7 1.0 HA3 H:GLY156 3.4 60.9 1.0 O3A H:ADP803 3.4 67.7 1.0 HZ1 H:LYS18 3.6 64.7 1.0 P H:PO4802 3.7 108.4 1.0 PA H:ADP803 3.8 60.2 1.0 O3B H:ADP803 3.9 71.4 1.0 HA2 H:GLY301 3.9 61.1 1.0 HA2 H:GLY156 4.1 60.9 1.0 CA H:GLY156 4.1 57.4 1.0 O1 H:PO4802 4.1 98.2 1.0 OD2 H:ASP11 4.2 77.5 1.0 OD2 H:ASP154 4.2 79.3 1.0 OD1 H:ASP154 4.2 71.5 1.0 HA3 H:GLY13 4.3 71.4 1.0 HA3 H:GLY301 4.3 61.6 1.0 HG23 H:VAL339 4.4 61.1 1.0 NZ H:LYS18 4.4 65.3 1.0 HZ2 H:LYS18 4.4 64.7 1.0 O2B H:ADP803 4.4 59.5 1.0 HG21 H:VAL339 4.5 61.5 1.0 OE1 H:GLN137 4.5 72.9 1.0 CG H:ASP154 4.6 69.1 1.0 O3 H:PO4802 4.6 88.3 1.0 N H:GLY156 4.6 58.2 1.0 O4 H:PO4802 4.6 96.3 1.0 CA H:GLY301 4.6 58.0 1.0 O2A H:ADP803 4.6 60.2 1.0 HA2 H:GLY13 4.7 70.4 1.0 H H:GLY302 4.7 65.2 1.0 HB H:VAL339 4.7 61.2 1.0 CG2 H:VAL339 4.8 60.2 1.0 H H:GLY156 4.8 61.2 1.0 CD H:GLN137 4.9 70.0 1.0 HG12 H:VAL339 4.9 61.3 1.0 H H:ASP157 4.9 63.3 1.0 OD1 H:ASP11 4.9 85.2 1.0 HB3 H:GLN137 4.9 67.7 1.0 HZ3 H:LYS18 4.9 64.5 1.0 HE3 H:LYS18 5.0 64.2 1.0 CG H:ASP11 5.0 80.0 1.0 CA H:GLY13 5.0 70.4 1.0 HG2 H:GLN137 5.0 67.8 1.0

B.Yuan, J.Scholz, J.Wald, R.Thuenauer, R.Hennell James, I.Ellenberg, S.Windhorst, J.Faix, T.C.Marlovits. Structural Basis For Subversion of Host Cell Actin Cytoskeleton During Salmonella Infection. Sci Adv V. 9 J5777 2023.
ISSN: ESSN 2375-2548
PubMed: 38064550
DOI: 10.1126/SCIADV.ADJ5777