Magnesium in PDB 8c4e: F-Actin Decorated By SIPA426-685

The binding sites of Magnesium atom in the F-Actin Decorated By SIPA426-685 (pdb code 8c4e). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 8 binding sites of Magnesium where determined in the F-Actin Decorated By SIPA426-685, PDB code: 8c4e:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Magnesium binding site 1 out of 8 in the F-Actin Decorated By SIPA426-685


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of F-Actin Decorated By SIPA426-685 within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg403 b:40.8 occ:1.00 O2B A:ADP401 1.9 67.0 1.0 O2 A:PO4402 2.3 89.1 1.0 O2A A:ADP401 2.7 66.0 1.0 PB A:ADP401 3.2 52.6 1.0 O3A A:ADP401 3.3 53.1 1.0 HZ1 A:LYS18 3.3 32.9 1.0 PA A:ADP401 3.4 53.3 1.0 HA3 A:GLY156 3.5 26.2 1.0 HG21 A:VAL339 3.7 25.2 1.0 P A:PO4402 3.8 102.8 1.0 HZ2 A:LYS18 3.8 31.9 1.0 NZ A:LYS18 4.0 27.3 1.0 OD1 A:ASP154 4.0 28.3 1.0 O3B A:ADP401 4.1 58.9 1.0 HA2 A:GLY301 4.1 22.9 1.0 O1A A:ADP401 4.2 53.5 1.0 HA2 A:GLY156 4.2 26.6 1.0 CA A:GLY156 4.3 24.3 1.0 HA2 A:GLY13 4.3 34.7 1.0 O1B A:ADP401 4.3 54.0 1.0 O1 A:PO4402 4.3 83.3 1.0 O3 A:PO4402 4.4 86.7 1.0 HB A:VAL339 4.4 26.3 1.0 HZ3 A:LYS18 4.6 32.5 1.0 HA3 A:GLY13 4.6 34.8 1.0 HE3 A:LYS18 4.6 33.2 1.0 HG12 A:VAL339 4.6 25.8 1.0 CG2 A:VAL339 4.6 22.2 1.0 OE1 A:GLN137 4.7 25.2 1.0 HA3 A:GLY301 4.7 23.0 1.0 O4 A:PO4402 4.8 85.5 1.0 N A:GLY156 4.8 24.7 1.0 H A:GLY302 4.8 25.2 1.0 O5' A:ADP401 4.8 45.3 1.0 CA A:GLY301 4.9 16.4 1.0 CD A:GLN137 4.9 28.6 1.0 CE A:LYS18 4.9 32.1 1.0 H A:GLY156 4.9 26.2 1.0 CA A:GLY13 4.9 32.7 1.0 HB3 A:GLN137 4.9 26.5 1.0 CB A:VAL339 5.0 19.7 1.0

Magnesium binding site 2 out of 8 in the F-Actin Decorated By SIPA426-685


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of F-Actin Decorated By SIPA426-685 within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg403 b:35.1 occ:1.00 O2B B:ADP402 1.9 53.6 1.0 O2 B:PO4401 2.2 75.5 1.0 PB B:ADP402 3.2 24.5 1.0 HZ3 B:LYS18 3.4 18.8 1.0 O2A B:ADP402 3.4 47.3 1.0 HA3 B:GLY156 3.5 14.5 1.0 O3A B:ADP402 3.6 41.7 1.0 P B:PO4401 3.6 95.2 1.0 O3B B:ADP402 3.9 45.8 1.0 HG22 B:VAL339 4.0 16.5 1.0 PA B:ADP402 4.1 28.4 1.0 OD2 B:ASP11 4.1 17.6 1.0 O3 B:PO4401 4.2 74.8 1.0 NZ B:LYS18 4.2 14.4 1.0 HA2 B:GLY156 4.2 14.0 1.0 HZ1 B:LYS18 4.2 18.4 1.0 HA2 B:GLY13 4.2 18.6 1.0 O1 B:PO4401 4.2 67.2 1.0 CA B:GLY156 4.2 11.6 1.0 HA2 B:GLY301 4.3 13.7 1.0 OD1 B:ASP154 4.3 17.5 1.0 O1B B:ADP402 4.4 33.6 1.0 HB B:VAL339 4.5 16.7 1.0 HE3 B:LYS18 4.6 20.3 1.0 HG12 B:VAL339 4.6 16.6 1.0 O4 B:PO4401 4.6 71.0 1.0 HA3 B:GLY13 4.6 18.9 1.0 OD1 B:ASP11 4.7 23.4 1.0 HA3 B:GLY301 4.7 14.4 1.0 HZ2 B:LYS18 4.7 18.7 1.0 N B:GLY156 4.8 16.6 1.0 O1A B:ADP402 4.8 43.3 1.0 CD B:GLN137 4.8 17.7 1.0 CG B:ASP11 4.8 21.7 1.0 H B:GLY156 4.8 14.6 1.0 OE1 B:GLN137 4.8 18.9 1.0 NE2 B:GLN137 4.8 18.2 1.0 CG2 B:VAL339 4.9 16.5 1.0 HE22 B:GLN137 4.9 17.2 1.0 CA B:GLY13 4.9 18.8 1.0 CE B:LYS18 4.9 21.5 1.0 H B:ASP157 4.9 15.6 1.0 HG2 B:GLN137 4.9 16.1 1.0 CA B:GLY301 5.0 6.9 1.0

Magnesium binding site 3 out of 8 in the F-Actin Decorated By SIPA426-685


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of F-Actin Decorated By SIPA426-685 within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:30.3 occ:1.00 O2B C:ADP401 2.0 55.6 1.0 O2 C:PO4403 2.2 72.4 1.0 HZ2 C:LYS18 3.3 18.3 1.0 O2A C:ADP401 3.3 46.0 1.0 PB C:ADP401 3.3 32.1 1.0 P C:PO4403 3.6 89.7 1.0 O3A C:ADP401 3.7 34.4 1.0 HA3 C:GLY156 3.7 18.5 1.0 HG21 C:VAL339 3.7 18.0 1.0 HZ3 C:LYS18 3.8 18.4 1.0 NZ C:LYS18 3.9 13.0 1.0 OD2 C:ASP11 3.9 22.6 1.0 O3B C:ADP401 4.0 47.9 1.0 PA C:ADP401 4.0 29.0 1.0 HZ1 C:LYS18 4.0 17.4 1.0 O3 C:PO4403 4.1 72.4 1.0 HA2 C:GLY301 4.2 15.1 1.0 HA3 C:GLY13 4.2 19.9 1.0 OD1 C:ASP154 4.2 17.9 1.0 O1 C:PO4403 4.3 62.0 1.0 OD1 C:ASP11 4.4 22.4 1.0 HB C:VAL339 4.4 19.0 1.0 CA C:GLY156 4.5 18.9 1.0 O1B C:ADP401 4.5 35.0 1.0 HA2 C:GLY156 4.5 18.8 1.0 CG C:ASP11 4.6 20.4 1.0 O4 C:PO4403 4.6 74.4 1.0 HG12 C:VAL339 4.6 17.8 1.0 CG2 C:VAL339 4.6 17.0 1.0 HA3 C:GLY301 4.7 15.7 1.0 HA2 C:GLY13 4.7 19.9 1.0 OE1 C:GLN137 4.7 19.8 1.0 O1A C:ADP401 4.8 38.9 1.0 CD C:GLN137 4.9 18.4 1.0 CA C:GLY301 4.9 9.0 1.0 CA C:GLY13 4.9 22.8 1.0 HB3 C:GLN137 5.0 19.5 1.0 CB C:VAL339 5.0 15.0 1.0 N C:GLY156 5.0 16.9 1.0 HE22 C:GLN137 5.0 19.6 1.0

Magnesium binding site 4 out of 8 in the F-Actin Decorated By SIPA426-685


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of F-Actin Decorated By SIPA426-685 within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg801 b:34.4 occ:1.00 O2B D:ADP802 2.0 58.9 1.0 O2 D:PO4803 2.1 73.3 1.0 O2A D:ADP802 3.0 48.6 1.0 PB D:ADP802 3.3 45.5 1.0 HA3 D:GLY156 3.4 21.0 1.0 O3A D:ADP802 3.5 30.9 1.0 HZ1 D:LYS18 3.5 20.2 1.0 P D:PO4803 3.5 94.8 1.0 PA D:ADP802 3.8 28.7 1.0 HA2 D:GLY301 3.9 15.8 1.0 HG21 D:VAL339 3.9 16.8 1.0 OD1 D:ASP154 4.0 25.9 1.0 HA2 D:GLY156 4.0 20.6 1.0 O1 D:PO4803 4.1 70.5 1.0 O3B D:ADP802 4.1 43.4 1.0 CA D:GLY156 4.1 21.8 1.0 O3 D:PO4803 4.2 76.0 1.0 OD2 D:ASP154 4.2 14.1 1.0 HZ2 D:LYS18 4.3 20.7 1.0 NZ D:LYS18 4.3 19.0 1.0 HA3 D:GLY13 4.3 21.5 1.0 HA3 D:GLY301 4.4 16.4 1.0 O1B D:ADP802 4.4 42.9 1.0 HE3 D:LYS18 4.5 20.6 1.0 CG D:ASP154 4.5 19.4 1.0 O4 D:PO4803 4.5 78.8 1.0 HB D:VAL339 4.6 18.7 1.0 OD2 D:ASP11 4.6 21.4 1.0 O1A D:ADP802 4.6 39.2 1.0 CA D:GLY301 4.6 9.5 1.0 N D:GLY156 4.6 19.8 1.0 H D:GLY302 4.7 19.3 1.0 HG12 D:VAL339 4.7 16.3 1.0 H D:GLY156 4.7 19.2 1.0 OD1 D:ASP11 4.8 19.2 1.0 CG2 D:VAL339 4.9 15.4 1.0 CE D:LYS18 4.9 20.7 1.0 H D:ASP157 4.9 21.7 1.0 HZ3 D:LYS18 4.9 20.3 1.0 OE1 D:GLN137 5.0 24.9 1.0

Magnesium binding site 5 out of 8 in the F-Actin Decorated By SIPA426-685


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of F-Actin Decorated By SIPA426-685 within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg801 b:32.4 occ:1.00 O2B E:ADP802 1.9 53.2 1.0 O2 E:PO4803 2.6 71.9 1.0 HZ1 E:LYS18 3.3 18.7 1.0 PB E:ADP802 3.3 29.3 1.0 O2A E:ADP802 3.5 48.3 1.0 O3A E:ADP802 3.7 34.3 1.0 OD2 E:ASP11 3.7 17.7 1.0 HA3 E:GLY156 3.8 21.6 1.0 HG21 E:VAL339 3.9 14.6 1.0 HA3 E:GLY13 3.9 22.2 1.0 HZ2 E:LYS18 4.0 19.3 1.0 NZ E:LYS18 4.0 15.2 1.0 P E:PO4803 4.0 90.9 1.0 PA E:ADP802 4.1 26.9 1.0 O3B E:ADP802 4.2 41.5 1.0 OD1 E:ASP11 4.3 17.3 1.0 O1B E:ADP802 4.3 36.6 1.0 HE3 E:LYS18 4.3 20.1 1.0 HA2 E:GLY301 4.4 17.6 1.0 HB E:VAL339 4.4 16.4 1.0 CG E:ASP11 4.4 20.1 1.0 O3 E:PO4803 4.5 74.9 1.0 OD1 E:ASP154 4.5 22.8 1.0 HG12 E:VAL339 4.5 14.8 1.0 HA2 E:GLY13 4.5 21.6 1.0 HZ3 E:LYS18 4.6 19.2 1.0 CA E:GLY156 4.7 15.6 1.0 CA E:GLY13 4.7 23.3 1.0 O1A E:ADP802 4.7 40.1 1.0 HA2 E:GLY156 4.7 22.1 1.0 CE E:LYS18 4.7 20.8 1.0 O1 E:PO4803 4.8 67.1 1.0 CD E:GLN137 4.8 19.1 1.0 CG2 E:VAL339 4.8 14.2 1.0 HA3 E:GLY301 4.8 17.2 1.0 NE2 E:GLN137 4.8 22.6 1.0 OD2 E:ASP154 4.8 27.9 1.0 OE1 E:GLN137 4.9 27.9 1.0 HE22 E:GLN137 4.9 18.5 1.0 HB3 E:GLN137 4.9 16.5 1.0 HG2 E:GLN137 4.9 17.0 1.0 O4 E:PO4803 4.9 74.9 1.0 CB E:VAL339 5.0 10.3 1.0

Magnesium binding site 6 out of 8 in the F-Actin Decorated By SIPA426-685


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of F-Actin Decorated By SIPA426-685 within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg801 b:30.5 occ:1.00 O2B F:ADP802 1.8 46.0 1.0 O2 F:PO4803 2.7 63.2 1.0 PB F:ADP802 3.2 30.6 1.0 O2A F:ADP802 3.2 42.5 1.0 HA3 F:GLY156 3.3 18.3 1.0 O3A F:ADP802 3.5 38.8 1.0 HZ2 F:LYS18 3.7 16.1 1.0 HA2 F:GLY156 3.9 16.8 1.0 HG21 F:VAL339 3.9 14.8 1.0 PA F:ADP802 3.9 22.9 1.0 O3B F:ADP802 3.9 42.1 1.0 HA2 F:GLY301 4.0 13.8 1.0 P F:PO4803 4.0 86.7 1.0 CA F:GLY156 4.0 15.5 1.0 HZ3 F:LYS18 4.0 16.6 1.0 OD1 F:ASP154 4.1 18.0 1.0 NZ F:LYS18 4.2 14.1 1.0 O3 F:PO4803 4.2 68.7 1.0 HZ1 F:LYS18 4.3 15.8 1.0 O1B F:ADP802 4.3 31.6 1.0 HA3 F:GLY301 4.3 13.9 1.0 HA3 F:GLY13 4.4 17.7 1.0 OD2 F:ASP11 4.5 18.8 1.0 N F:GLY156 4.6 17.4 1.0 H F:GLY302 4.6 17.6 1.0 CA F:GLY301 4.7 9.9 1.0 O1A F:ADP802 4.7 39.7 1.0 HB F:VAL339 4.7 16.1 1.0 HA2 F:GLY13 4.8 16.7 1.0 O1 F:PO4803 4.8 61.6 1.0 H F:ASP157 4.8 17.0 1.0 CG2 F:VAL339 4.8 13.5 1.0 H F:GLY156 4.8 16.8 1.0 CG F:ASP154 4.9 16.0 1.0 OD2 F:ASP154 4.9 29.4 1.0 OD1 F:ASP11 4.9 23.9 1.0 OE1 F:GLN137 5.0 14.8 1.0

Magnesium binding site 7 out of 8 in the F-Actin Decorated By SIPA426-685


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of F-Actin Decorated By SIPA426-685 within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg403 b:31.1 occ:1.00 O2B G:ADP402 1.9 46.0 1.0 O2 G:PO4401 2.8 72.5 1.0 O2A G:ADP402 3.0 42.3 1.0 PB G:ADP402 3.2 28.6 1.0 HA3 G:GLY156 3.3 13.3 1.0 O3A G:ADP402 3.5 43.8 1.0 HZ1 G:LYS18 3.6 16.3 1.0 PA G:ADP402 3.8 27.4 1.0 HA2 G:GLY301 3.8 13.0 1.0 HA2 G:GLY156 3.9 13.9 1.0 HG21 G:VAL339 3.9 14.6 1.0 O3B G:ADP402 4.0 40.1 1.0 CA G:GLY156 4.0 7.5 1.0 P G:PO4401 4.0 93.2 1.0 OD2 G:ASP154 4.0 32.0 1.0 O3 G:PO4401 4.1 76.8 1.0 OD1 G:ASP154 4.2 22.2 1.0 HA3 G:GLY301 4.2 13.7 1.0 HZ2 G:LYS18 4.3 17.3 1.0 NZ G:LYS18 4.3 16.5 1.0 O1B G:ADP402 4.4 24.2 1.0 H G:GLY302 4.4 15.3 1.0 HA3 G:GLY13 4.4 17.7 1.0 OD2 G:ASP11 4.5 21.4 1.0 N G:GLY156 4.5 8.8 1.0 CG G:ASP154 4.5 17.4 1.0 CA G:GLY301 4.5 6.6 1.0 O1A G:ADP402 4.6 43.9 1.0 HB G:VAL339 4.7 15.2 1.0 H G:GLY156 4.7 14.1 1.0 HE3 G:LYS18 4.7 17.6 1.0 O1 G:PO4401 4.8 66.1 1.0 CG2 G:VAL339 4.8 12.6 1.0 H G:ASP157 4.9 15.2 1.0 HZ3 G:LYS18 5.0 16.9 1.0 HA2 G:GLY13 5.0 17.0 1.0

Magnesium binding site 8 out of 8 in the F-Actin Decorated By SIPA426-685


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of F-Actin Decorated By SIPA426-685 within 5.0Å range: probe atom residue distance (Å) B Occ H:Mg801 b:39.6 occ:1.00 O2B H:ADP803 1.9 57.8 1.0 O2 H:PO4802 2.9 78.0 1.0 O2A H:ADP803 3.0 49.8 1.0 PB H:ADP803 3.1 49.0 1.0 O3A H:ADP803 3.2 53.4 1.0 HA3 H:GLY156 3.3 24.1 1.0 PA H:ADP803 3.6 31.2 1.0 HZ1 H:LYS18 3.7 28.6 1.0 HA2 H:GLY301 3.8 24.5 1.0 O3B H:ADP803 3.8 53.4 1.0 HA2 H:GLY156 3.9 24.4 1.0 CA H:GLY156 4.0 18.4 1.0 P H:PO4802 4.1 97.6 1.0 O3 H:PO4802 4.1 86.7 1.0 HG23 H:VAL339 4.2 30.5 1.0 HA3 H:GLY301 4.2 25.2 1.0 O1B H:ADP803 4.2 41.0 1.0 OD2 H:ASP154 4.3 33.0 1.0 OD1 H:ASP154 4.3 28.3 1.0 HZ2 H:LYS18 4.4 29.7 1.0 H H:GLY302 4.4 24.8 1.0 HA3 H:GLY13 4.4 30.9 1.0 NZ H:LYS18 4.4 25.1 1.0 OD2 H:ASP11 4.4 31.1 1.0 O1A H:ADP803 4.5 51.4 1.0 CA H:GLY301 4.5 21.9 1.0 N H:GLY156 4.5 21.0 1.0 OE1 H:GLN137 4.6 32.8 1.0 HG21 H:VAL339 4.6 30.1 1.0 HB H:VAL339 4.6 30.3 1.0 CG H:ASP154 4.7 28.0 1.0 HE3 H:LYS18 4.7 30.3 1.0 HA2 H:GLY13 4.7 30.6 1.0 H H:GLY156 4.8 24.3 1.0 CG2 H:VAL339 4.8 31.3 1.0 H H:ASP157 4.8 23.5 1.0 O1 H:PO4802 4.9 73.4 1.0 O5' H:ADP803 4.9 38.0 1.0 HG12 H:VAL339 4.9 30.3 1.0 OD1 H:ASP11 5.0 35.9 1.0

B.Yuan, J.Scholz, J.Wald, R.Thuenauer, R.Hennell James, I.Ellenberg, S.Windhorst, J.Faix, T.C.Marlovits. Structural Basis For Subversion of Host Cell Actin Cytoskeleton During Salmonella Infection. Sci Adv V. 9 J5777 2023.
ISSN: ESSN 2375-2548
PubMed: 38064550
DOI: 10.1126/SCIADV.ADJ5777