Magnesium in PDB 8cmy: Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry

All present enzymatic activity of Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry:
4.1.1.39;

The binding sites of Magnesium atom in the Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry (pdb code 8cmy). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry, PDB code: 8cmy:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg502 b:76.2 occ:1.00 ND2 M:ASN115 3.6 82.9 1.0 OE2 C:GLU196 4.0 87.7 1.0 O6P C:CAP501 4.3 125.8 1.0 OD1 C:ASP195 4.3 90.5 1.0 OE1 C:GLU196 4.5 87.7 1.0 CD C:GLU196 4.5 87.7 1.0 CG M:ASN115 4.8 82.9 1.0 NZ C:LYS193 4.8 88.0 1.0 NZ C:LYS167 4.9 100.7 1.0 O4P C:CAP501 5.0 125.8 1.0

Magnesium binding site 2 out of 5 in the Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg503 b:83.7 occ:1.00 OD1 C:ASN115 2.5 96.8 1.0 OE2 C:GLU52 3.0 94.8 1.0 ND2 C:ASN115 3.0 96.8 1.0 CG C:ASN115 3.1 96.8 1.0 CD C:GLU52 4.2 94.8 1.0 CB C:ASN115 4.6 96.8 1.0 O C:ASN115 4.8 96.8 1.0 CG C:GLU52 5.0 94.8 1.0

Magnesium binding site 3 out of 5 in the Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg502 b:67.4 occ:1.00 OD1 G:ASP195 3.7 84.0 1.0 ND2 I:ASN115 3.7 80.2 1.0 OE1 G:GLU196 3.8 83.6 1.0 OE2 G:GLU196 4.1 83.6 1.0 CD G:GLU196 4.3 83.6 1.0 CG I:ASN115 4.8 80.2 1.0 CG G:ASP195 4.8 84.0 1.0 CD G:LYS169 4.9 87.6 1.0

Magnesium binding site 4 out of 5 in the Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ I:Mg501 b:79.1 occ:1.00 OE2 I:GLU196 2.8 77.2 1.0 OD1 I:ASP195 3.3 77.5 1.0 CD I:GLU196 3.5 77.2 1.0 OE1 I:GLU196 3.6 77.2 1.0 NZ I:LYS169 3.7 78.2 1.0 NZ I:LYS193 3.9 72.0 1.0 NE2 I:HIS286 4.2 75.3 1.0 CG I:ASP195 4.3 77.5 1.0 ND2 G:ASN115 4.5 99.1 1.0 OD2 I:ASP195 4.8 77.5 1.0 CE I:LYS193 4.8 72.0 1.0 CE I:LYS169 4.9 78.2 1.0 CG I:GLU196 4.9 77.2 1.0 CE1 I:HIS286 5.0 75.3 1.0

Magnesium binding site 5 out of 5 in the Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structure of the Cyanobium Sp. Pcc 7001 Determined with C1 Symmetry within 5.0Å range: probe atom residue distance (Å) B Occ K:Mg502 b:73.4 occ:1.00 O6P K:CAP501 2.4 97.2 1.0 NZ K:LYS167 3.1 69.5 1.0 CE K:LYS167 3.2 69.5 1.0 O4P K:CAP501 3.5 97.2 1.0 P2 K:CAP501 3.5 97.2 1.0 O5P K:CAP501 4.4 97.2 1.0 CG2 K:THR165 4.5 62.4 1.0 CD K:LYS167 4.6 69.5 1.0 O5 K:CAP501 4.7 97.2 1.0 C5 K:CAP501 4.7 97.2 1.0 CA K:GLY395 4.7 81.7 1.0 OD1 K:ASP195 4.9 58.4 1.0 CB K:THR165 4.9 62.4 1.0

S.L.Evans, M.M.Al-Hazeem, D.Mann, N.Smetacek, A.J.Beavil, Y.Sun, T.Chen, G.F.Dykes, L.Liu, J.R.C.Bergeron. Single-Particle Cryo-Em Analysis of the Shell Architecture and Internal Organization of An Intact A-Carboxysome Structure 2023.
ISSN: ISSN 0969-2126