Magnesium in PDB 8cnt: Structure of the Deah-Box Helicase PRP16 in Complex with Adp

The structure of Structure of the Deah-Box Helicase PRP16 in Complex with Adp, PDB code: 8cnt was solved by T.B.Garbers, P.Neumann, R.Ficner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.97 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	55.13, 102.14, 106.61, 90, 90, 90
R / Rfree (%)	19.3 / 23.8

The binding sites of Magnesium atom in the Structure of the Deah-Box Helicase PRP16 in Complex with Adp (pdb code 8cnt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Structure of the Deah-Box Helicase PRP16 in Complex with Adp, PDB code: 8cnt:

Magnesium binding site 1 out of 1 in the Structure of the Deah-Box Helicase PRP16 in Complex with Adp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structure of the Deah-Box Helicase PRP16 in Complex with Adp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1001 b:31.3 occ:1.00 O A:HOH1159 2.0 27.9 1.0 O1B A:ADP1002 2.1 25.3 0.9 O A:HOH1206 2.1 34.2 1.0 OG1 A:THR338 2.1 27.5 1.0 O A:HOH1344 2.2 35.7 1.0 O A:HOH1124 2.3 28.0 1.0 CB A:THR338 3.2 29.9 1.0 PB A:ADP1002 3.2 29.2 0.9 O3B A:ADP1002 3.5 27.0 0.9 O A:SER587 3.8 25.2 1.0 OE2 A:GLU429 3.8 26.2 1.0 OD2 A:ASP428 3.8 30.5 1.0 CG2 A:THR338 4.2 30.1 1.0 N A:THR338 4.2 31.5 1.0 O2A A:ADP1002 4.2 33.1 0.9 OD1 A:ASP428 4.3 30.4 1.0 CD A:GLU429 4.3 27.7 1.0 CA A:THR338 4.3 31.1 1.0 O2B A:ADP1002 4.3 28.9 0.9 O3A A:ADP1002 4.3 30.0 0.9 O A:THR586 4.4 34.0 1.0 CG A:ASP428 4.4 28.6 1.0 C A:SER587 4.5 28.7 1.0 O A:HOH1309 4.5 31.1 1.0 CG A:GLU429 4.5 25.6 1.0 O A:HOH1228 4.7 39.4 1.0 PA A:ADP1002 4.7 32.2 0.9 NZ A:LYS337 4.8 36.4 1.0 OE1 A:GLN360 4.8 32.6 1.0 CA A:SER587 4.9 29.0 1.0 O1A A:ADP1002 4.9 30.1 0.9

T.B.Garbers, M.Enders, P.Neumann, R.Ficner. Crystal Structure of PRP16 in Complex with Adp. Acta Crystallogr.,Sect.F V. 79 200 2023.
ISSN: ESSN 2053-230X
PubMed: 37548918
DOI: 10.1107/S2053230X23005721