Magnesium in PDB 8cpv: Human Apoferritin

The structure of Human Apoferritin also contains other interesting chemical elements:

Sodium

(Na)

24 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Magnesium atom in the Human Apoferritin (pdb code 8cpv). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 14 binding sites of Magnesium where determined in the Human Apoferritin, PDB code: 8cpv:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg202 b:1.4 occ:1.00 OE1 Y:GLU134 2.4 1.3 1.0 OE1 E:GLU134 2.4 1.2 1.0 OE1 1:GLU134 2.4 1.3 1.0 OD1 E:ASP131 2.8 1.2 1.0 OD1 1:ASP131 2.8 1.3 1.0 OD1 Y:ASP131 2.8 1.3 1.0 CD Y:GLU134 3.6 1.3 1.0 CD 1:GLU134 3.6 1.3 1.0 CD E:GLU134 3.6 1.2 1.0 CG 1:ASP131 4.0 1.3 1.0 CG E:ASP131 4.0 1.2 1.0 CG Y:ASP131 4.0 1.3 1.0 OE2 1:GLU134 4.2 1.3 1.0 OE2 Y:GLU134 4.2 1.3 1.0 OE2 E:GLU134 4.2 1.2 1.0 CB 1:ASP131 4.5 1.3 1.0 CB Y:ASP131 4.5 1.3 1.0 CB E:ASP131 4.5 1.2 1.0 CG Y:GLU134 4.7 1.3 1.0 CG E:GLU134 4.7 1.2 1.0 CG 1:GLU134 4.7 1.3 1.0 CB E:GLU134 4.7 1.2 1.0 CB Y:GLU134 4.7 1.3 1.0 CB 1:GLU134 4.7 1.3 1.0 CA 1:ASP131 4.8 1.3 1.0 CA Y:ASP131 4.8 1.3 1.0 CA E:ASP131 4.8 1.2 1.0 OD2 E:ASP131 5.0 1.2 1.0 OD2 Y:ASP131 5.0 1.3 1.0 OD2 1:ASP131 5.0 1.3 1.0

Magnesium binding site 2 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ 1:Mg203 b:8.4 occ:1.00 NE2 1:HIS173 3.2 5.4 1.0 NE2 r:HIS173 3.2 5.2 1.0 NE2 A:HIS173 3.2 5.4 1.0 NE2 B:HIS173 3.2 5.7 1.0 CD2 r:LEU169 4.0 5.6 1.0 CD2 A:LEU169 4.0 6.0 1.0 CD2 B:LEU169 4.0 6.3 1.0 CD2 1:LEU169 4.0 6.3 1.0 CE1 1:HIS173 4.0 5.4 1.0 CE1 B:HIS173 4.0 5.7 1.0 CE1 A:HIS173 4.0 5.4 1.0 CE1 r:HIS173 4.0 5.2 1.0 CD2 r:HIS173 4.1 5.2 1.0 CD2 A:HIS173 4.1 5.4 1.0 CD2 1:HIS173 4.1 5.4 1.0 CD2 B:HIS173 4.1 5.7 1.0 CD1 B:LEU169 4.7 6.3 1.0 CD1 A:LEU169 4.7 6.0 1.0 CD1 1:LEU169 4.7 6.3 1.0 CD1 r:LEU169 4.7 5.6 1.0 CG r:LEU169 4.9 5.6 1.0 CG A:LEU169 4.9 6.0 1.0 CG B:LEU169 4.9 6.3 1.0 CG 1:LEU169 4.9 6.3 1.0

Magnesium binding site 3 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg202 b:8.7 occ:1.00 NE2 Y:HIS173 3.2 5.4 1.0 NE2 4:HIS173 3.2 5.0 1.0 NE2 2:HIS173 3.2 5.1 1.0 NE2 W:HIS173 3.2 5.2 1.0 CD2 Y:LEU169 4.0 6.0 1.0 CD2 W:LEU169 4.0 6.5 1.0 CD2 4:LEU169 4.0 6.2 1.0 CD2 2:LEU169 4.0 6.0 1.0 CE1 W:HIS173 4.0 5.2 1.0 CE1 4:HIS173 4.0 5.0 1.0 CE1 2:HIS173 4.0 5.1 1.0 CE1 Y:HIS173 4.0 5.4 1.0 CD2 Y:HIS173 4.1 5.4 1.0 CD2 2:HIS173 4.1 5.1 1.0 CD2 4:HIS173 4.1 5.0 1.0 CD2 W:HIS173 4.1 5.2 1.0 CD1 Y:LEU169 4.7 6.0 1.0 CD1 2:LEU169 4.7 6.0 1.0 CD1 4:LEU169 4.7 6.2 1.0 CD1 W:LEU169 4.7 6.5 1.0 CG Y:LEU169 4.9 6.0 1.0 CG 4:LEU169 4.9 6.2 1.0 CG 2:LEU169 4.9 6.0 1.0 CG W:LEU169 4.9 6.5 1.0

Magnesium binding site 4 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ 2:Mg203 b:1.8 occ:1.00 OE1 I:GLU134 2.4 1.4 1.0 OE1 U:GLU134 2.4 1.4 1.0 OE1 2:GLU134 2.4 1.4 1.0 OD1 I:ASP131 2.8 1.6 1.0 OD1 U:ASP131 2.8 1.5 1.0 OD1 2:ASP131 2.8 1.5 1.0 CD I:GLU134 3.6 1.4 1.0 CD U:GLU134 3.6 1.4 1.0 CD 2:GLU134 3.6 1.4 1.0 CG I:ASP131 3.9 1.6 1.0 CG U:ASP131 4.0 1.5 1.0 CG 2:ASP131 4.0 1.5 1.0 OE2 I:GLU134 4.2 1.4 1.0 OE2 2:GLU134 4.2 1.4 1.0 OE2 U:GLU134 4.2 1.4 1.0 CB I:ASP131 4.5 1.6 1.0 CB 2:ASP131 4.5 1.5 1.0 CB U:ASP131 4.5 1.5 1.0 CG I:GLU134 4.7 1.4 1.0 CG U:GLU134 4.7 1.4 1.0 CG 2:GLU134 4.7 1.4 1.0 CB U:GLU134 4.7 1.4 1.0 CB 2:GLU134 4.7 1.4 1.0 CB I:GLU134 4.8 1.4 1.0 CA 2:ASP131 4.8 1.5 1.0 CA I:ASP131 4.8 1.6 1.0 CA U:ASP131 4.8 1.5 1.0 OD2 I:ASP131 5.0 1.6 1.0 OD2 U:ASP131 5.0 1.5 1.0 OD2 2:ASP131 5.0 1.5 1.0

Magnesium binding site 5 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ 4:Mg202 b:1.5 occ:1.00 OE1 4:GLU134 2.4 1.2 1.0 OE1 r:GLU134 2.4 1.2 1.0 OE1 S:GLU134 2.4 1.3 1.0 OD1 S:ASP131 2.8 1.4 1.0 OD1 r:ASP131 2.8 1.2 1.0 OD1 4:ASP131 2.8 1.4 1.0 CD 4:GLU134 3.6 1.2 1.0 CD r:GLU134 3.6 1.2 1.0 CD S:GLU134 3.6 1.3 1.0 CG S:ASP131 4.0 1.4 1.0 CG r:ASP131 4.0 1.2 1.0 CG 4:ASP131 4.0 1.4 1.0 OE2 4:GLU134 4.2 1.2 1.0 OE2 r:GLU134 4.2 1.2 1.0 OE2 S:GLU134 4.2 1.3 1.0 CB 4:ASP131 4.5 1.4 1.0 CB r:ASP131 4.5 1.2 1.0 CB S:ASP131 4.5 1.4 1.0 CG 4:GLU134 4.7 1.2 1.0 CG r:GLU134 4.7 1.2 1.0 CG S:GLU134 4.7 1.3 1.0 CB 4:GLU134 4.7 1.2 1.0 CB S:GLU134 4.7 1.3 1.0 CB r:GLU134 4.7 1.2 1.0 CA 4:ASP131 4.8 1.4 1.0 CA r:ASP131 4.8 1.2 1.0 CA S:ASP131 4.8 1.4 1.0 OD2 S:ASP131 5.0 1.4 1.0 OD2 r:ASP131 5.0 1.2 1.0 OD2 4:ASP131 5.0 1.4 1.0

Magnesium binding site 6 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg202 b:8.3 occ:1.00 NE2 E:HIS173 3.2 5.5 1.0 NE2 6:HIS173 3.2 4.9 1.0 NE2 X:HIS173 3.2 5.2 1.0 NE2 F:HIS173 3.2 5.2 1.0 CD2 X:LEU169 4.0 6.0 1.0 CD2 F:LEU169 4.0 6.4 1.0 CD2 E:LEU169 4.0 6.7 1.0 CD2 6:LEU169 4.0 5.8 1.0 CE1 6:HIS173 4.0 4.9 1.0 CE1 E:HIS173 4.0 5.5 1.0 CE1 F:HIS173 4.0 5.2 1.0 CE1 X:HIS173 4.0 5.2 1.0 CD2 X:HIS173 4.1 5.2 1.0 CD2 6:HIS173 4.1 4.9 1.0 CD2 F:HIS173 4.1 5.2 1.0 CD2 E:HIS173 4.1 5.5 1.0 CD1 6:LEU169 4.7 5.8 1.0 CD1 F:LEU169 4.7 6.4 1.0 CD1 E:LEU169 4.7 6.7 1.0 CD1 X:LEU169 4.7 6.0 1.0 CG X:LEU169 4.9 6.0 1.0 CG F:LEU169 4.9 6.4 1.0 CG E:LEU169 4.9 6.7 1.0 CG 6:LEU169 4.9 5.8 1.0

Magnesium binding site 7 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ 6:Mg203 b:1.7 occ:1.00 OE1 G:GLU134 2.5 1.2 1.0 OE1 6:GLU134 2.5 1.3 1.0 OE1 W:GLU134 2.5 1.4 1.0 OD1 6:ASP131 3.1 1.3 1.0 OD1 G:ASP131 3.1 1.3 1.0 OD1 W:ASP131 3.1 1.6 1.0 CD G:GLU134 3.7 1.2 1.0 CD 6:GLU134 3.7 1.3 1.0 CD W:GLU134 3.7 1.4 1.0 OE2 G:GLU134 4.2 1.2 1.0 OE2 6:GLU134 4.2 1.3 1.0 CG 6:ASP131 4.2 1.3 1.0 OE2 W:GLU134 4.2 1.4 1.0 CG G:ASP131 4.2 1.3 1.0 CG W:ASP131 4.2 1.6 1.0 CB 6:ASP131 4.7 1.3 1.0 CB G:ASP131 4.7 1.3 1.0 CB W:ASP131 4.7 1.6 1.0 CB G:GLU134 4.8 1.2 1.0 CB 6:GLU134 4.8 1.3 1.0 CB W:GLU134 4.8 1.4 1.0 CG G:GLU134 4.8 1.2 1.0 CG 6:GLU134 4.8 1.3 1.0 CG W:GLU134 4.8 1.4 1.0 CA 6:ASP131 4.8 1.3 1.0 CA G:ASP131 4.8 1.3 1.0 CA W:ASP131 4.8 1.6 1.0

Magnesium binding site 8 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:1.1 occ:1.00 OE1 A:GLU134 2.4 1.2 1.0 OE1 F:GLU134 2.4 1.3 1.0 OE1 e:GLU134 2.4 1.2 1.0 OD1 F:ASP131 2.8 1.4 1.0 OD1 e:ASP131 2.8 1.4 1.0 OD1 A:ASP131 2.8 1.2 1.0 CD A:GLU134 3.6 1.2 1.0 CD F:GLU134 3.6 1.3 1.0 CD e:GLU134 3.6 1.2 1.0 CG F:ASP131 4.0 1.4 1.0 CG A:ASP131 4.0 1.2 1.0 CG e:ASP131 4.0 1.4 1.0 OE2 F:GLU134 4.2 1.3 1.0 OE2 A:GLU134 4.2 1.2 1.0 OE2 e:GLU134 4.2 1.2 1.0 CB A:ASP131 4.5 1.2 1.0 CB e:ASP131 4.5 1.4 1.0 CB F:ASP131 4.5 1.4 1.0 CG A:GLU134 4.7 1.2 1.0 CG F:GLU134 4.7 1.3 1.0 CG e:GLU134 4.7 1.2 1.0 CB A:GLU134 4.7 1.2 1.0 CB e:GLU134 4.7 1.2 1.0 CB F:GLU134 4.7 1.3 1.0 CA e:ASP131 4.8 1.4 1.0 CA A:ASP131 4.8 1.2 1.0 CA F:ASP131 4.8 1.4 1.0 OD2 F:ASP131 5.0 1.4 1.0 OD2 e:ASP131 5.0 1.4 1.0 OD2 A:ASP131 5.0 1.2 1.0

Magnesium binding site 9 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg501 b:1.6 occ:1.00 OE1 O:GLU134 2.4 1.3 1.0 OE1 B:GLU134 2.4 1.5 1.0 OE1 P:GLU134 2.4 1.2 1.0 OD1 P:ASP131 2.8 1.3 1.0 OD1 B:ASP131 2.8 1.6 1.0 OD1 O:ASP131 2.8 1.3 1.0 CD O:GLU134 3.6 1.3 1.0 CD B:GLU134 3.6 1.5 1.0 CD P:GLU134 3.6 1.2 1.0 CG P:ASP131 4.0 1.3 1.0 CG B:ASP131 4.0 1.6 1.0 CG O:ASP131 4.0 1.3 1.0 OE2 O:GLU134 4.2 1.3 1.0 OE2 P:GLU134 4.2 1.2 1.0 OE2 B:GLU134 4.2 1.5 1.0 CB P:ASP131 4.5 1.3 1.0 CB B:ASP131 4.5 1.6 1.0 CB O:ASP131 4.5 1.3 1.0 CG B:GLU134 4.7 1.5 1.0 CG O:GLU134 4.7 1.3 1.0 CG P:GLU134 4.7 1.2 1.0 CB B:GLU134 4.7 1.5 1.0 CB P:GLU134 4.7 1.2 1.0 CB O:GLU134 4.7 1.3 1.0 CA B:ASP131 4.8 1.6 1.0 CA P:ASP131 4.8 1.3 1.0 CA O:ASP131 4.8 1.3 1.0 OD2 P:ASP131 5.0 1.3 1.0 OD2 O:ASP131 5.0 1.3 1.0 OD2 B:ASP131 5.0 1.6 1.0

Magnesium binding site 10 out of 14 in the Human Apoferritin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Human Apoferritin within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg202 b:8.7 occ:1.00 NE2 M:HIS173 3.2 5.4 1.0 NE2 G:HIS173 3.2 5.3 1.0 NE2 I:HIS173 3.2 5.5 1.0 NE2 K:HIS173 3.2 5.7 1.0 CD2 G:LEU169 4.0 5.8 1.0 CD2 M:LEU169 4.0 5.9 1.0 CD2 I:LEU169 4.0 6.3 1.0 CD2 K:LEU169 4.0 6.3 1.0 CE1 M:HIS173 4.0 5.4 1.0 CE1 I:HIS173 4.0 5.5 1.0 CE1 K:HIS173 4.0 5.7 1.0 CE1 G:HIS173 4.0 5.3 1.0 CD2 G:HIS173 4.1 5.3 1.0 CD2 I:HIS173 4.1 5.5 1.0 CD2 K:HIS173 4.1 5.7 1.0 CD2 M:HIS173 4.1 5.4 1.0 CD1 K:LEU169 4.7 6.3 1.0 CD1 G:LEU169 4.7 5.8 1.0 CD1 I:LEU169 4.7 6.3 1.0 CD1 M:LEU169 4.7 5.9 1.0 CG G:LEU169 4.9 5.8 1.0 CG K:LEU169 4.9 6.3 1.0 CG M:LEU169 4.9 5.9 1.0 CG I:LEU169 4.9 6.3 1.0

M.G.F.Last, W.E.M.Noteborn, L.M.Voortman, T.H.Sharp. Super-Resolution Fluorescence Imaging of Cryosamples Does Not Damage Protein Structure To Be Published.