Magnesium in PDB 8d15: Bent Adp-F-Actin

The binding sites of Magnesium atom in the Bent Adp-F-Actin (pdb code 8d15). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 7 binding sites of Magnesium where determined in the Bent Adp-F-Actin, PDB code: 8d15:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7;

Magnesium binding site 1 out of 7 in the Bent Adp-F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Bent Adp-F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:21.7 occ:1.00 OD2 A:ASP154 2.9 16.0 1.0 O2B A:ADP401 2.9 19.4 1.0 OD1 A:ASP154 3.0 16.0 1.0 CG A:ASP154 3.3 16.0 1.0 CA A:GLY156 3.4 16.5 1.0 OE1 A:GLN137 3.7 21.4 1.0 N A:GLY156 3.9 16.5 1.0 O3B A:ADP401 3.9 19.4 1.0 PB A:ADP401 4.0 19.4 1.0 CD A:GLN137 4.2 21.4 1.0 NE2 A:GLN137 4.2 21.4 1.0 O2A A:ADP401 4.5 19.4 1.0 CA A:GLY301 4.6 15.9 1.0 O3A A:ADP401 4.7 19.4 1.0 C A:GLY156 4.7 16.5 1.0 CG2 A:VAL339 4.7 20.8 1.0 C A:SER155 4.8 14.5 1.0 CB A:ASP154 4.9 16.0 1.0

Magnesium binding site 2 out of 7 in the Bent Adp-F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Bent Adp-F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:16.2 occ:1.00 O3B B:ADP401 2.4 15.4 1.0 NE2 B:GLN137 3.4 17.1 1.0 OD2 B:ASP154 3.8 14.5 1.0 PB B:ADP401 3.8 15.4 1.0 CD B:GLN137 3.9 17.1 1.0 OE1 B:GLN137 4.0 17.1 1.0 O2B B:ADP401 4.2 15.4 1.0 O1B B:ADP401 4.3 15.4 1.0 CA B:GLY156 4.7 13.2 1.0 CG B:ASP154 4.7 14.5 1.0 OD1 B:ASP154 4.8 14.5 1.0 O2A B:ADP401 4.8 15.4 1.0 CG2 B:VAL339 4.9 17.4 1.0 OD2 B:ASP11 4.9 17.8 1.0 CG B:GLN137 5.0 17.1 1.0 O3A B:ADP401 5.0 15.4 1.0

Magnesium binding site 3 out of 7 in the Bent Adp-F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Bent Adp-F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:28.0 occ:1.00 O3B C:ADP401 2.3 19.9 1.0 PB C:ADP401 3.5 19.9 1.0 O2B C:ADP401 3.6 19.9 1.0 OE1 C:GLN137 3.8 22.8 1.0 O1B C:ADP401 4.1 19.9 1.0 CD C:GLN137 4.2 22.8 1.0 OD2 C:ASP154 4.3 21.3 1.0 NE2 C:GLN137 4.3 22.8 1.0 OD2 C:ASP11 4.5 26.3 1.0 OD1 C:ASP154 4.6 21.3 1.0 CA C:GLY156 4.6 19.2 1.0 CG2 C:VAL339 4.7 23.8 1.0 OD1 C:ASP11 4.7 26.3 1.0 NZ C:LYS18 4.8 23.8 1.0 O3A C:ADP401 4.8 19.9 1.0 O1A C:ADP401 4.8 19.9 1.0 CA C:GLY13 4.8 23.5 1.0 CG C:ASP154 4.9 21.3 1.0 CA C:GLY301 5.0 21.6 1.0

Magnesium binding site 4 out of 7 in the Bent Adp-F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Bent Adp-F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:18.0 occ:1.00 O2B D:ADP401 2.2 19.3 1.0 NE2 D:GLN137 3.0 21.7 1.0 PB D:ADP401 3.6 19.3 1.0 CD D:GLN137 3.8 21.7 1.0 OE1 D:GLN137 4.0 21.7 1.0 CA D:GLY156 4.2 18.7 1.0 O3B D:ADP401 4.2 19.3 1.0 OD1 D:ASP154 4.2 17.8 1.0 OD2 D:ASP154 4.3 17.8 1.0 OD2 D:ASP11 4.4 23.9 1.0 O1B D:ADP401 4.4 19.3 1.0 O3A D:ADP401 4.5 19.3 1.0 CG D:ASP154 4.7 17.8 1.0 O2A D:ADP401 4.7 19.3 1.0 N D:GLY156 4.9 18.7 1.0 CG2 D:VAL339 4.9 20.8 1.0 CG D:GLN137 5.0 21.7 1.0 OD1 D:ASP11 5.0 23.9 1.0

Magnesium binding site 5 out of 7 in the Bent Adp-F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Bent Adp-F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:20.6 occ:1.00 O2B E:ADP401 2.8 19.7 1.0 O3B E:ADP401 3.3 19.7 1.0 OE1 E:GLN137 3.6 21.3 1.0 PB E:ADP401 3.7 19.7 1.0 OD1 E:ASP154 3.8 17.4 1.0 CD E:GLN137 4.3 21.3 1.0 CA E:GLY156 4.3 17.3 1.0 O2A E:ADP401 4.5 19.7 1.0 NE2 E:GLN137 4.5 21.3 1.0 NZ E:LYS18 4.6 22.4 1.0 O1B E:ADP401 4.6 19.7 1.0 OD2 E:ASP11 4.7 23.3 1.0 O3A E:ADP401 4.7 19.7 1.0 CG E:ASP154 4.7 17.4 1.0 CG2 E:VAL339 4.7 21.1 1.0 N E:GLY156 4.9 17.3 1.0 OD2 E:ASP154 5.0 17.4 1.0

Magnesium binding site 6 out of 7 in the Bent Adp-F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Bent Adp-F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:11.6 occ:1.00 O2B F:ADP401 2.1 18.0 1.0 OE1 F:GLN137 2.9 18.5 1.0 O3B F:ADP401 2.9 18.0 1.0 PB F:ADP401 3.1 18.0 1.0 CD F:GLN137 3.7 18.5 1.0 O1B F:ADP401 3.8 18.0 1.0 NE2 F:GLN137 3.9 18.5 1.0 OD1 F:ASP154 4.3 15.1 1.0 O3A F:ADP401 4.5 18.0 1.0 CA F:GLY156 4.5 15.2 1.0 OD1 F:ASP11 4.5 21.1 1.0 OD2 F:ASP11 4.7 21.1 1.0 CA F:GLY13 4.8 21.2 1.0 OD2 F:ASP154 4.9 15.1 1.0 O2A F:ADP401 5.0 18.0 1.0

Magnesium binding site 7 out of 7 in the Bent Adp-F-Actin


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Bent Adp-F-Actin within 5.0Å range: probe atom residue distance (Å) B Occ G:Mg402 b:25.6 occ:1.00 O2B G:ADP401 2.1 28.3 1.0 O3B G:ADP401 3.2 28.3 1.0 PB G:ADP401 3.3 28.3 1.0 CA G:GLY156 3.7 26.3 1.0 OD2 G:ASP154 4.0 30.6 1.0 OD1 G:ASP154 4.1 30.6 1.0 NE2 G:GLN137 4.2 38.4 1.0 O1B G:ADP401 4.2 28.3 1.0 O3A G:ADP401 4.3 28.3 1.0 N G:GLY156 4.5 26.3 1.0 CG G:ASP154 4.5 30.6 1.0 C G:GLY156 4.8 26.3 1.0 O2A G:ADP401 4.8 28.3 1.0 N G:ASP157 4.8 25.7 1.0 CD G:GLN137 4.9 38.4 1.0 CA G:GLY13 5.0 31.6 1.0

M.J.Reynolds, C.Hachicho, A.G.Carl, R.Gong, G.M.Alushin. Bending Forces and Nucleotide State Jointly Regulate F-Actin Structure. Nature V. 611 380 2022.
ISSN: ESSN 1476-4687
PubMed: 36289330
DOI: 10.1038/S41586-022-05366-W