Magnesium in PDB 8dbs: E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified

All present enzymatic activity of E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified:
7.1.2.2;

The binding sites of Magnesium atom in the E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified (pdb code 8dbs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 5 binding sites of Magnesium where determined in the E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified, PDB code: 8dbs:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5;

Magnesium binding site 1 out of 5 in the E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg601 b:59.1 occ:1.00 OG1 A:THR176 1.7 57.5 1.0 O2G A:ATP600 2.2 62.8 1.0 O2B A:ATP600 2.7 62.8 1.0 CB A:THR176 3.1 57.5 1.0 PG A:ATP600 3.6 62.8 1.0 OD2 A:ASP261 3.7 50.3 1.0 CA A:THR176 3.8 57.5 1.0 N A:THR176 3.8 57.5 1.0 PB A:ATP600 3.9 62.8 1.0 CG2 A:THR176 3.9 57.5 1.0 O3B A:ATP600 4.0 62.8 1.0 NE2 A:GLN200 4.2 54.6 1.0 O3G A:ATP600 4.3 62.8 1.0 OD1 A:ASP261 4.3 50.3 1.0 CG A:ASP261 4.4 50.3 1.0 O1G A:ATP600 4.7 62.8 1.0 O1B A:ATP600 4.8 62.8 1.0 C A:LYS175 4.9 55.0 1.0

Magnesium binding site 2 out of 5 in the E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg601 b:55.3 occ:1.00 O2G B:ATP600 1.9 56.0 1.0 OG1 B:THR176 2.0 52.4 1.0 O2B B:ATP600 2.2 56.0 1.0 CB B:THR176 3.2 52.4 1.0 PG B:ATP600 3.2 56.0 1.0 O3B B:ATP600 3.3 56.0 1.0 PB B:ATP600 3.3 56.0 1.0 N B:THR176 4.0 52.4 1.0 CG2 B:THR176 4.1 52.4 1.0 O3G B:ATP600 4.1 56.0 1.0 CA B:THR176 4.2 52.4 1.0 O1G B:ATP600 4.2 56.0 1.0 O1B B:ATP600 4.3 56.0 1.0 O3A B:ATP600 4.3 56.0 1.0 O2A B:ATP600 4.4 56.0 1.0 OD1 B:ASP261 4.6 49.1 1.0 PA B:ATP600 4.8 56.0 1.0 OD2 B:ASP261 4.9 49.1 1.0 NZ B:LYS175 4.9 51.2 1.0 O1A B:ATP600 4.9 56.0 1.0

Magnesium binding site 3 out of 5 in the E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg601 b:63.6 occ:1.00 O2G C:ATP600 2.0 67.1 1.0 OG1 C:THR176 2.0 58.2 1.0 O2B C:ATP600 2.1 67.1 1.0 CB C:THR176 3.1 58.2 1.0 O3B C:ATP600 3.2 67.1 1.0 PG C:ATP600 3.2 67.1 1.0 PB C:ATP600 3.2 67.1 1.0 CG2 C:THR176 4.0 58.2 1.0 O2A C:ATP600 4.0 67.1 1.0 O1G C:ATP600 4.0 67.1 1.0 O3A C:ATP600 4.0 67.1 1.0 N C:THR176 4.1 58.2 1.0 CA C:THR176 4.2 58.2 1.0 O3G C:ATP600 4.3 67.1 1.0 O1B C:ATP600 4.3 67.1 1.0 PA C:ATP600 4.3 67.1 1.0 O1A C:ATP600 4.5 67.1 1.0 NE2 C:GLN200 4.6 59.6 1.0 OD1 C:ASP261 5.0 53.1 1.0

Magnesium binding site 4 out of 5 in the E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg501 b:47.2 occ:1.00 O1G D:ATP502 1.9 52.7 1.0 O1B D:ATP502 2.0 52.7 1.0 OG1 D:THR156 2.1 49.4 1.0 PG D:ATP502 3.1 52.7 1.0 PB D:ATP502 3.1 52.7 1.0 O3B D:ATP502 3.2 52.7 1.0 CB D:THR156 3.4 49.4 1.0 OE1 D:GLU181 3.9 53.2 1.0 O2G D:ATP502 4.0 52.7 1.0 NH1 D:ARG182 4.0 50.0 1.0 O3A D:ATP502 4.1 52.7 1.0 N D:THR156 4.1 49.4 1.0 O3G D:ATP502 4.2 52.7 1.0 OE2 D:GLU185 4.2 56.9 1.0 O2B D:ATP502 4.2 52.7 1.0 CG2 D:THR156 4.3 49.4 1.0 CA D:THR156 4.3 49.4 1.0 OE1 D:GLU185 4.3 56.9 1.0 O1A D:ATP502 4.4 52.7 1.0 NH2 A:ARG376 4.5 54.1 1.0 CD D:GLU181 4.6 53.2 1.0 PA D:ATP502 4.6 52.7 1.0 O2A D:ATP502 4.6 52.7 1.0 CD D:GLU185 4.7 56.9 1.0 NZ D:LYS155 4.8 43.7 1.0 CE D:LYS155 4.8 43.7 1.0

Magnesium binding site 5 out of 5 in the E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of E. Coli Atp Synthase Imaged in 10MM Mgatp STATE2 "Half-Up" Fo Classified within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg502 b:80.0 occ:1.00 N E:THR156 1.8 75.9 1.0 CB E:THR156 1.8 75.9 1.0 O2A E:ADP501 1.9 78.1 1.0 O1B E:ADP501 2.1 78.1 1.0 OG1 E:THR156 2.1 75.9 1.0 CA E:THR156 2.2 75.9 1.0 PA E:ADP501 2.7 78.1 1.0 PB E:ADP501 2.9 78.1 1.0 O1A E:ADP501 3.0 78.1 1.0 O2B E:ADP501 3.0 78.1 1.0 C E:LYS155 3.1 72.4 1.0 C E:THR156 3.1 75.9 1.0 O3A E:ADP501 3.2 78.1 1.0 N E:VAL157 3.2 77.6 1.0 CG2 E:THR156 3.3 75.9 1.0 N E:LYS155 3.5 72.4 1.0 CA E:LYS155 3.7 72.4 1.0 C E:GLY154 3.9 74.3 1.0 O E:LYS155 4.0 72.4 1.0 O5' E:ADP501 4.1 78.1 1.0 CB E:LYS155 4.2 72.4 1.0 O E:THR156 4.3 75.9 1.0 O3B E:ADP501 4.3 78.1 1.0 O E:GLY154 4.4 74.3 1.0 CA E:GLY154 4.5 74.3 1.0 CA E:VAL157 4.6 77.6 1.0 N E:GLY154 4.9 74.3 1.0 CG2 E:VAL157 4.9 77.6 1.0 CG1 E:VAL157 5.0 77.6 1.0

M.Sobti, Y.C.Zeng, J.L.Walshe, S.H.J.Brown, R.Ishmukhametov, A.G.Stewart. Changes Within the Central Stalk of E. Coli F 1 F O Atp Synthase Observed After Addition of Atp. Commun Biol V. 6 26 2023.
ISSN: ESSN 2399-3642
PubMed: 36631659
DOI: 10.1038/S42003-023-04414-Z