Magnesium in PDB 8dd0: The Structure of the Native Cardiac Thin Filament Junction Region

The binding sites of Magnesium atom in the The Structure of the Native Cardiac Thin Filament Junction Region (pdb code 8dd0). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 6 binding sites of Magnesium where determined in the The Structure of the Native Cardiac Thin Filament Junction Region, PDB code: 8dd0:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6;

Magnesium binding site 1 out of 6 in the The Structure of the Native Cardiac Thin Filament Junction Region


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of The Structure of the Native Cardiac Thin Filament Junction Region within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg402 b:8.0 occ:1.00 O1B A:ADP401 2.0 12.0 1.0 OE1 A:GLN137 2.8 13.6 1.0 PB A:ADP401 3.3 12.0 1.0 CD A:GLN137 3.7 13.6 1.0 O2B A:ADP401 3.7 12.0 1.0 OD2 A:ASP154 3.8 8.8 1.0 NE2 A:GLN137 4.0 13.6 1.0 O3B A:ADP401 4.2 12.0 1.0 O3A A:ADP401 4.3 12.0 1.0 O1A A:ADP401 4.4 12.0 1.0 NZ A:LYS18 4.4 11.4 1.0 OD1 A:ASP154 4.4 8.8 1.0 CG2 A:VAL339 4.5 10.7 1.0 CG A:ASP154 4.6 8.8 1.0 CA A:GLY156 4.7 9.1 1.0 OD2 A:ASP11 4.8 14.5 1.0 CB A:VAL339 4.9 10.7 1.0 CG A:GLN137 4.9 13.6 1.0 PA A:ADP401 5.0 12.0 1.0

Magnesium binding site 2 out of 6 in the The Structure of the Native Cardiac Thin Filament Junction Region


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of The Structure of the Native Cardiac Thin Filament Junction Region within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg402 b:8.0 occ:1.00 O1B B:ADP401 2.0 12.0 1.0 OE1 B:GLN137 2.8 13.6 1.0 PB B:ADP401 3.3 12.0 1.0 CD B:GLN137 3.7 13.6 1.0 O2B B:ADP401 3.7 12.0 1.0 OD2 B:ASP154 3.8 8.8 1.0 NE2 B:GLN137 4.0 13.6 1.0 O3B B:ADP401 4.2 12.0 1.0 O3A B:ADP401 4.3 12.0 1.0 O1A B:ADP401 4.4 12.0 1.0 NZ B:LYS18 4.4 11.4 1.0 OD1 B:ASP154 4.4 8.8 1.0 CG2 B:VAL339 4.5 10.7 1.0 CG B:ASP154 4.6 8.8 1.0 CA B:GLY156 4.7 9.1 1.0 OD2 B:ASP11 4.8 14.5 1.0 CB B:VAL339 4.9 10.7 1.0 CG B:GLN137 4.9 13.6 1.0 PA B:ADP401 5.0 12.0 1.0

Magnesium binding site 3 out of 6 in the The Structure of the Native Cardiac Thin Filament Junction Region


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of The Structure of the Native Cardiac Thin Filament Junction Region within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg402 b:8.0 occ:1.00 O1B C:ADP401 2.0 12.0 1.0 OE1 C:GLN137 2.8 13.6 1.0 PB C:ADP401 3.3 12.0 1.0 CD C:GLN137 3.7 13.6 1.0 O2B C:ADP401 3.7 12.0 1.0 OD2 C:ASP154 3.8 8.8 1.0 NE2 C:GLN137 4.0 13.6 1.0 O3B C:ADP401 4.2 12.0 1.0 O3A C:ADP401 4.3 12.0 1.0 O1A C:ADP401 4.4 12.0 1.0 NZ C:LYS18 4.4 11.4 1.0 OD1 C:ASP154 4.4 8.8 1.0 CG2 C:VAL339 4.5 10.7 1.0 CG C:ASP154 4.6 8.8 1.0 CA C:GLY156 4.7 9.1 1.0 OD2 C:ASP11 4.8 14.5 1.0 CB C:VAL339 4.9 10.7 1.0 CG C:GLN137 4.9 13.6 1.0 PA C:ADP401 5.0 12.0 1.0

Magnesium binding site 4 out of 6 in the The Structure of the Native Cardiac Thin Filament Junction Region


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of The Structure of the Native Cardiac Thin Filament Junction Region within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg402 b:8.0 occ:1.00 O1B D:ADP401 2.0 12.0 1.0 OE1 D:GLN137 2.8 13.6 1.0 PB D:ADP401 3.3 12.0 1.0 CD D:GLN137 3.7 13.6 1.0 O2B D:ADP401 3.7 12.0 1.0 OD2 D:ASP154 3.8 8.8 1.0 NE2 D:GLN137 4.0 13.6 1.0 O3B D:ADP401 4.2 12.0 1.0 O3A D:ADP401 4.3 12.0 1.0 O1A D:ADP401 4.4 12.0 1.0 NZ D:LYS18 4.4 11.4 1.0 OD1 D:ASP154 4.4 8.8 1.0 CG2 D:VAL339 4.5 10.7 1.0 CG D:ASP154 4.6 8.8 1.0 CA D:GLY156 4.7 9.1 1.0 OD2 D:ASP11 4.8 14.5 1.0 CB D:VAL339 4.9 10.7 1.0 CG D:GLN137 4.9 13.6 1.0 PA D:ADP401 5.0 12.0 1.0

Magnesium binding site 5 out of 6 in the The Structure of the Native Cardiac Thin Filament Junction Region


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of The Structure of the Native Cardiac Thin Filament Junction Region within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg402 b:8.0 occ:1.00 O1B E:ADP401 2.0 12.0 1.0 OE1 E:GLN137 2.8 13.6 1.0 PB E:ADP401 3.3 12.0 1.0 CD E:GLN137 3.7 13.6 1.0 O2B E:ADP401 3.7 12.0 1.0 OD2 E:ASP154 3.8 8.8 1.0 NE2 E:GLN137 4.0 13.6 1.0 O3B E:ADP401 4.2 12.0 1.0 O3A E:ADP401 4.3 12.0 1.0 O1A E:ADP401 4.4 12.0 1.0 NZ E:LYS18 4.4 11.4 1.0 OD1 E:ASP154 4.4 8.8 1.0 CG2 E:VAL339 4.5 10.7 1.0 CG E:ASP154 4.6 8.8 1.0 CA E:GLY156 4.7 9.1 1.0 OD2 E:ASP11 4.8 14.5 1.0 CB E:VAL339 4.9 10.7 1.0 CG E:GLN137 4.9 13.6 1.0 PA E:ADP401 5.0 12.0 1.0

Magnesium binding site 6 out of 6 in the The Structure of the Native Cardiac Thin Filament Junction Region


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of The Structure of the Native Cardiac Thin Filament Junction Region within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg402 b:8.0 occ:1.00 O1B F:ADP401 2.0 12.0 1.0 OE1 F:GLN137 2.8 13.6 1.0 PB F:ADP401 3.3 12.0 1.0 O2B F:ADP401 3.7 12.0 1.0 CD F:GLN137 3.7 13.6 1.0 OD2 F:ASP154 3.8 8.8 1.0 NE2 F:GLN137 4.0 13.6 1.0 O3B F:ADP401 4.2 12.0 1.0 O3A F:ADP401 4.3 12.0 1.0 O1A F:ADP401 4.4 12.0 1.0 NZ F:LYS18 4.4 11.4 1.0 OD1 F:ASP154 4.4 8.8 1.0 CG2 F:VAL339 4.5 10.7 1.0 CG F:ASP154 4.6 8.8 1.0 CA F:GLY156 4.7 9.1 1.0 OD2 F:ASP11 4.8 14.5 1.0 CB F:VAL339 4.9 10.7 1.0 CG F:GLN137 4.9 13.6 1.0 PA F:ADP401 5.0 12.0 1.0

C.M.Risi, B.Belknap, H.D.White, K.Dryden, J.R.Pinto, P.B.Chase, V.E.Galkin. High-Resolution Cryo-Em Structure of the Junction Region of the Native Cardiac Thin Filament in Relaxed State PNAS Nexus.
ISSN: ESSN 2752-6542
DOI: 10.1093/PNASNEXUS/PGAC298