Magnesium in PDB 8dg5: Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib

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>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Magnesium atom in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib (pdb code 8dg5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 11 binding sites of Magnesium where determined in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib, PDB code: 8dg5:
Jump to Magnesium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Magnesium binding site 1 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2301 b:22.1 occ:1.00 OD1 A:ASP1749 2.0 21.7 1.0 OE2 A:GLU1908 2.3 35.0 1.0 O3' E:A38 3.1 43.4 1.0 CG A:ASP1749 3.2 32.5 1.0 CG2 A:VAL1780 3.4 19.6 1.0 O A:VAL1780 3.4 30.3 1.0 CD A:GLU1908 3.5 28.5 1.0 CD2 A:LEU1752 3.5 24.9 1.0 C4' E:A38 3.5 42.0 1.0 O2' E:A38 3.6 41.0 1.0 C3' E:A38 3.8 42.5 1.0 OD2 A:ASP1749 4.1 32.0 1.0 CB A:ASP1749 4.1 28.8 1.0 C5' E:A38 4.2 49.4 1.0 OP1 E:C39 4.2 37.4 1.0 OE1 A:GLU1908 4.2 31.2 1.0 C2' E:A38 4.3 41.7 1.0 P E:C39 4.3 48.0 1.0 CA A:ASP1749 4.4 26.5 1.0 CG A:LEU1752 4.4 17.9 1.0 CG A:GLU1908 4.4 30.1 1.0 C A:VAL1780 4.5 24.9 1.0 OD1 A:ASN1782 4.5 45.2 1.0 O A:ASP1749 4.5 29.0 1.0 CB A:VAL1780 4.6 22.8 1.0 O4' E:A38 4.6 27.1 1.0 CA A:VAL1780 4.9 25.4 1.0 C A:ASP1749 4.9 21.3 1.0 CB A:LEU1752 5.0 18.5 1.0 CG1 A:VAL1780 5.0 30.9 1.0

Magnesium binding site 2 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2302 b:56.3 occ:1.00 OP1 E:A3 3.0 66.8 1.0 CB A:ALA1199 3.4 52.9 1.0 CG A:ARG1200 4.0 53.3 1.0 P E:A3 4.1 66.9 1.0 O1P E:U5P101 4.1 59.4 1.0 OP1 E:G2 4.2 67.6 1.0 CA A:ALA1199 4.3 51.9 1.0 NE A:ARG1200 4.3 51.6 1.0 C5' E:U5P101 4.3 53.6 1.0 CD A:ARG1200 4.4 52.6 1.0 C A:ALA1199 4.4 50.4 1.0 N A:ALA1199 4.4 47.6 1.0 OP2 E:A3 4.5 66.6 1.0 N A:ARG1200 4.5 52.7 1.0 O3' E:G2 4.7 59.2 1.0 O2P E:U5P101 4.8 57.4 1.0 O A:ALA1199 4.8 48.2 1.0 P E:U5P101 5.0 69.4 1.0

Magnesium binding site 3 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg2303 b:33.1 occ:1.00 OD1 A:ASN1210 3.1 57.5 1.0 C1' E:G11 3.6 17.7 1.0 O4' E:G11 3.8 23.0 1.0 N3 E:A10 3.9 38.8 1.0 N3 E:A50 4.0 30.3 1.0 CA A:ASN1210 4.2 53.2 1.0 CG A:ASN1210 4.2 58.0 1.0 O2' E:A10 4.3 30.1 1.0 N9 E:G11 4.3 14.9 1.0 C2 E:A10 4.3 42.0 1.0 C2 E:A50 4.5 31.9 1.0 O2' E:G11 4.5 30.6 1.0 O A:VAL1209 4.6 50.8 1.0 CB A:ASN1210 4.6 53.8 1.0 C4 E:A50 4.6 27.5 1.0 N A:ARG1211 4.6 69.4 1.0 C2' E:G11 4.7 32.5 1.0 C A:ASN1210 4.8 56.9 1.0 C4 E:G11 4.9 20.4 1.0 C1' E:A50 4.9 22.2 1.0 C4' E:G11 5.0 27.9 1.0 C8 E:G11 5.0 26.3 1.0 N9 E:A50 5.0 22.5 1.0

Magnesium binding site 4 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg102 b:41.8 occ:1.00 OP1 E:C39 2.0 37.4 1.0 NZ A:LYS1901 2.5 53.6 1.0 OD1 A:ASP1905 2.7 42.5 1.0 OE1 A:GLU1908 2.9 31.2 1.0 C5' E:C39 3.0 36.9 1.0 P E:C39 3.1 48.0 1.0 O5' E:C39 3.2 38.9 1.0 CE A:LYS1901 3.7 54.0 1.0 CG A:ASP1905 3.8 42.4 1.0 CD A:GLU1745 3.9 39.4 1.0 OE1 A:GLU1745 3.9 37.1 1.0 CD A:GLU1908 4.0 28.5 1.0 OP2 E:C39 4.1 35.6 1.0 OE2 A:GLU1745 4.2 37.1 1.0 CG A:GLU1745 4.2 38.0 1.0 O3' E:A38 4.3 43.4 1.0 C4' E:C39 4.4 36.2 1.0 OD2 A:ASP1905 4.5 46.8 1.0 OE2 A:GLU1908 4.5 35.0 1.0 CD A:LYS1901 4.5 45.9 1.0 ND2 A:ASN1782 4.6 44.0 1.0 CB A:GLU1745 4.6 24.8 1.0 CA A:ASP1905 4.7 43.8 1.0 CB A:ASP1905 4.7 39.9 1.0 OD1 A:ASN1782 4.8 45.2 1.0 C3' E:C39 4.9 39.9 1.0 O3' E:C39 5.0 31.0 1.0

Magnesium binding site 5 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 5 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg103 b:18.2 occ:1.00 OP2 E:A41 3.3 41.3 1.0 N7 E:A41 4.0 39.5 1.0 C8 E:A41 4.5 36.3 1.0 C5 E:U40 4.6 46.2 1.0 C6 E:U40 4.7 46.6 1.0 P E:A41 4.8 31.3 1.0

Magnesium binding site 6 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 6 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg104 b:53.5 occ:1.00 OP2 E:U21 3.8 45.2 1.0 NE A:ARG2225 4.0 69.4 1.0 OP2 E:A22 4.0 43.0 1.0 CZ A:ARG2225 4.1 67.7 1.0 CD A:ARG2225 4.3 69.4 1.0 N7 E:A22 4.4 43.4 1.0 NH2 A:ARG2225 4.5 66.1 1.0 NH1 A:ARG2225 4.5 65.4 1.0 C5 E:U21 4.6 31.9 1.0 O5' E:U21 4.9 40.0 1.0 C6 E:U21 4.9 34.4 1.0 P E:U21 4.9 46.7 1.0

Magnesium binding site 7 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 7 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg105 b:32.8 occ:1.00 OP2 E:A10 2.1 42.5 1.0 P E:A10 3.5 48.3 1.0 N7 E:A10 3.7 41.4 1.0 C8 E:A10 3.8 42.2 1.0 C3' E:U9 4.3 42.6 1.0 O5' E:A10 4.3 44.1 1.0 OP1 E:A10 4.3 46.7 1.0 O5' E:U9 4.4 56.4 1.0 O3' E:U9 4.4 39.1 1.0 MG E:MG106 4.7 23.5 1.0 C5 E:A10 4.9 33.9 1.0

Magnesium binding site 8 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 8 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg106 b:23.5 occ:1.00 N7 E:G11 2.9 25.4 1.0 C8 E:G11 3.6 26.3 1.0 N7 E:G12 4.0 42.5 1.0 C5 E:G11 4.0 21.3 1.0 OP2 E:G11 4.1 38.1 1.0 O6 E:G11 4.3 40.4 1.0 C8 E:G12 4.4 40.9 1.0 C6 E:G11 4.5 31.1 1.0 MG E:MG105 4.7 32.8 1.0 C5 E:A10 4.8 33.9 1.0 N7 E:A10 4.8 41.4 1.0 N9 E:G11 4.8 14.9 1.0

Magnesium binding site 9 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 9 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg107 b:52.9 occ:1.00 N4 E:C44 2.9 47.3 1.0 C5 E:U42 3.7 37.9 1.0 C4 E:C44 3.9 42.9 1.0 OP2 E:A43 4.0 46.7 1.0 C6 E:U42 4.0 34.1 1.0 C5 E:C44 4.1 43.0 1.0 N7 E:A43 4.3 44.2 1.0 C4 E:U42 4.3 39.7 1.0 OP2 E:U42 4.5 42.6 1.0 C8 E:A43 4.7 48.7 1.0 O4 E:U42 4.7 45.1 1.0 O5' E:U42 4.9 42.3 1.0 N1 E:U42 4.9 38.2 1.0

Magnesium binding site 10 out of 11 in the Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 10 of Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iib within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg108 b:44.1 occ:1.00 OP2 E:C39 2.1 35.6 1.0 C5 E:C39 3.2 34.0 1.0 P E:C39 3.3 48.0 1.0 O5' E:C39 3.5 38.9 1.0 C6 E:C39 3.5 32.0 1.0 CE A:LYS1901 4.1 54.0 1.0 ND2 A:ASN1782 4.2 44.0 1.0 C3' E:A38 4.3 42.5 1.0 O3' E:A38 4.4 43.4 1.0 OP1 E:C39 4.4 37.4 1.0 O5' E:A38 4.4 44.9 1.0 C4 E:C39 4.5 34.1 1.0 NZ A:LYS1901 4.7 53.6 1.0 N1 E:C39 4.9 18.2 1.0 C5' E:C39 4.9 36.9 1.0 N4 E:C39 4.9 33.5 1.0 C8 E:A38 5.0 45.1 1.0 OP2 E:A38 5.0 43.0 1.0

K.Jouravleva, D.Golovenko, G.Demo, R.C.Dutcher, T.M.T.Hall, P.D.Zamore, A.A.Korostelev. Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb. Mol.Cell V. 82 4049 2022.
ISSN: ISSN 1097-2765
PubMed: 36182693
DOI: 10.1016/J.MOLCEL.2022.09.002