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Magnesium in PDB 8dgf: AVS4 Bound to Phage Phiv-1 Portal

Magnesium Binding Sites:

The binding sites of Magnesium atom in the AVS4 Bound to Phage Phiv-1 Portal (pdb code 8dgf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the AVS4 Bound to Phage Phiv-1 Portal, PDB code: 8dgf:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in 8dgf

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Magnesium binding site 1 out of 4 in the AVS4 Bound to Phage Phiv-1 Portal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of AVS4 Bound to Phage Phiv-1 Portal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg1602

b:29.6
occ:1.00
O1G A:ATP1601 2.1 71.7 1.0
OG1 A:THR240 2.2 52.8 1.0
O2B A:ATP1601 2.4 65.4 1.0
PG A:ATP1601 3.3 32.2 1.0
O3B A:ATP1601 3.5 57.8 1.0
PB A:ATP1601 3.5 9.2 1.0
CB A:THR240 3.6 38.0 1.0
O3G A:ATP1601 4.2 68.6 1.0
O1A A:ATP1601 4.3 60.1 1.0
CG2 A:THR240 4.3 33.5 1.0
O3A A:ATP1601 4.3 56.4 1.0
OG A:SER297 4.3 58.7 1.0
O2G A:ATP1601 4.4 54.2 1.0
N A:THR240 4.4 26.8 1.0
OD2 A:ASP296 4.4 61.6 1.0
OD1 A:ASP296 4.6 65.0 1.0
CA A:THR240 4.6 19.6 1.0
PA A:ATP1601 4.6 16.4 1.0
O1B A:ATP1601 4.7 52.2 1.0
O2A A:ATP1601 4.7 68.4 1.0
CG A:ASP296 4.9 54.0 1.0

Magnesium binding site 2 out of 4 in 8dgf

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Magnesium binding site 2 out of 4 in the AVS4 Bound to Phage Phiv-1 Portal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of AVS4 Bound to Phage Phiv-1 Portal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Mg1602

b:43.6
occ:1.00
O2B B:ATP1601 2.1 71.4 1.0
O1G B:ATP1601 2.1 82.2 1.0
OG1 B:THR240 2.8 45.2 1.0
PG B:ATP1601 3.2 62.8 1.0
PB B:ATP1601 3.3 30.3 1.0
O3B B:ATP1601 3.4 59.7 1.0
O3G B:ATP1601 4.1 72.3 1.0
CB B:THR240 4.1 45.3 1.0
O3A B:ATP1601 4.2 58.1 1.0
O2G B:ATP1601 4.4 64.5 1.0
O1B B:ATP1601 4.5 62.9 1.0
OD1 B:ASP296 4.5 63.0 1.0
O1A B:ATP1601 4.6 70.8 1.0
CG2 B:THR240 4.8 39.0 1.0
PA B:ATP1601 4.8 39.6 1.0
N B:THR240 4.9 43.0 1.0
OD2 B:ASP296 4.9 66.7 1.0
O2A B:ATP1601 4.9 68.1 1.0

Magnesium binding site 3 out of 4 in 8dgf

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Magnesium binding site 3 out of 4 in the AVS4 Bound to Phage Phiv-1 Portal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of AVS4 Bound to Phage Phiv-1 Portal within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Mg1602

b:29.2
occ:1.00
O1G C:ATP1601 2.1 72.2 1.0
OG1 C:THR240 2.2 50.5 1.0
O2B C:ATP1601 2.3 65.5 1.0
PG C:ATP1601 3.3 33.7 1.0
O3B C:ATP1601 3.5 56.7 1.0
PB C:ATP1601 3.5 8.5 1.0
CB C:THR240 3.6 37.4 1.0
O3G C:ATP1601 4.2 68.3 1.0
CG2 C:THR240 4.3 33.8 1.0
O1A C:ATP1601 4.3 60.1 1.0
O3A C:ATP1601 4.3 55.5 1.0
OG C:SER297 4.3 60.6 1.0
N C:THR240 4.4 29.0 1.0
O2G C:ATP1601 4.4 55.6 1.0
OD2 C:ASP296 4.4 63.6 1.0
OD1 C:ASP296 4.5 69.0 1.0
CA C:THR240 4.6 20.2 1.0
PA C:ATP1601 4.6 15.0 1.0
O1B C:ATP1601 4.7 54.2 1.0
O2A C:ATP1601 4.7 68.3 1.0
CG C:ASP296 4.9 56.2 1.0

Magnesium binding site 4 out of 4 in 8dgf

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Magnesium binding site 4 out of 4 in the AVS4 Bound to Phage Phiv-1 Portal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of AVS4 Bound to Phage Phiv-1 Portal within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Mg1602

b:42.9
occ:1.00
O2B D:ATP1601 2.1 62.2 1.0
O1G D:ATP1601 2.1 74.1 1.0
OG1 D:THR240 2.8 43.1 1.0
PG D:ATP1601 3.2 58.6 1.0
PB D:ATP1601 3.3 25.8 1.0
O3B D:ATP1601 3.4 49.6 1.0
O3G D:ATP1601 4.0 63.4 1.0
CB D:THR240 4.1 44.3 1.0
O3A D:ATP1601 4.1 49.2 1.0
O2G D:ATP1601 4.4 54.5 1.0
O1B D:ATP1601 4.5 54.4 1.0
OD1 D:ASP296 4.5 60.8 1.0
O1A D:ATP1601 4.6 61.3 1.0
CG2 D:THR240 4.8 38.7 1.0
PA D:ATP1601 4.8 34.9 1.0
OD2 D:ASP296 4.8 65.0 1.0
N D:THR240 4.9 42.9 1.0
O2A D:ATP1601 4.9 59.0 1.0

Reference:

L.A.Gao, M.E.Wilkinson, J.Strecker, K.S.Makarova, R.K.Macrae, E.V.Koonin, F.Zhang. Prokaryotic Innate Immunity Through Pattern Recognition of Conserved Viral Proteins. Science V. 377 M4096 2022.
ISSN: ESSN 1095-9203
PubMed: 35951700
DOI: 10.1126/SCIENCE.ABM4096
Page generated: Fri Oct 4 00:40:28 2024

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