Magnesium in PDB 8dgf: AVS4 Bound to Phage Phiv-1 Portal

The binding sites of Magnesium atom in the AVS4 Bound to Phage Phiv-1 Portal (pdb code 8dgf). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 4 binding sites of Magnesium where determined in the AVS4 Bound to Phage Phiv-1 Portal, PDB code: 8dgf:
Jump to Magnesium binding site number: 1; 2; 3; 4;

Magnesium binding site 1 out of 4 in the AVS4 Bound to Phage Phiv-1 Portal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of AVS4 Bound to Phage Phiv-1 Portal within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg1602 b:29.6 occ:1.00 O1G A:ATP1601 2.1 71.7 1.0 OG1 A:THR240 2.2 52.8 1.0 O2B A:ATP1601 2.4 65.4 1.0 PG A:ATP1601 3.3 32.2 1.0 O3B A:ATP1601 3.5 57.8 1.0 PB A:ATP1601 3.5 9.2 1.0 CB A:THR240 3.6 38.0 1.0 O3G A:ATP1601 4.2 68.6 1.0 O1A A:ATP1601 4.3 60.1 1.0 CG2 A:THR240 4.3 33.5 1.0 O3A A:ATP1601 4.3 56.4 1.0 OG A:SER297 4.3 58.7 1.0 O2G A:ATP1601 4.4 54.2 1.0 N A:THR240 4.4 26.8 1.0 OD2 A:ASP296 4.4 61.6 1.0 OD1 A:ASP296 4.6 65.0 1.0 CA A:THR240 4.6 19.6 1.0 PA A:ATP1601 4.6 16.4 1.0 O1B A:ATP1601 4.7 52.2 1.0 O2A A:ATP1601 4.7 68.4 1.0 CG A:ASP296 4.9 54.0 1.0

Magnesium binding site 2 out of 4 in the AVS4 Bound to Phage Phiv-1 Portal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of AVS4 Bound to Phage Phiv-1 Portal within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg1602 b:43.6 occ:1.00 O2B B:ATP1601 2.1 71.4 1.0 O1G B:ATP1601 2.1 82.2 1.0 OG1 B:THR240 2.8 45.2 1.0 PG B:ATP1601 3.2 62.8 1.0 PB B:ATP1601 3.3 30.3 1.0 O3B B:ATP1601 3.4 59.7 1.0 O3G B:ATP1601 4.1 72.3 1.0 CB B:THR240 4.1 45.3 1.0 O3A B:ATP1601 4.2 58.1 1.0 O2G B:ATP1601 4.4 64.5 1.0 O1B B:ATP1601 4.5 62.9 1.0 OD1 B:ASP296 4.5 63.0 1.0 O1A B:ATP1601 4.6 70.8 1.0 CG2 B:THR240 4.8 39.0 1.0 PA B:ATP1601 4.8 39.6 1.0 N B:THR240 4.9 43.0 1.0 OD2 B:ASP296 4.9 66.7 1.0 O2A B:ATP1601 4.9 68.1 1.0

Magnesium binding site 3 out of 4 in the AVS4 Bound to Phage Phiv-1 Portal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 3 of AVS4 Bound to Phage Phiv-1 Portal within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg1602 b:29.2 occ:1.00 O1G C:ATP1601 2.1 72.2 1.0 OG1 C:THR240 2.2 50.5 1.0 O2B C:ATP1601 2.3 65.5 1.0 PG C:ATP1601 3.3 33.7 1.0 O3B C:ATP1601 3.5 56.7 1.0 PB C:ATP1601 3.5 8.5 1.0 CB C:THR240 3.6 37.4 1.0 O3G C:ATP1601 4.2 68.3 1.0 CG2 C:THR240 4.3 33.8 1.0 O1A C:ATP1601 4.3 60.1 1.0 O3A C:ATP1601 4.3 55.5 1.0 OG C:SER297 4.3 60.6 1.0 N C:THR240 4.4 29.0 1.0 O2G C:ATP1601 4.4 55.6 1.0 OD2 C:ASP296 4.4 63.6 1.0 OD1 C:ASP296 4.5 69.0 1.0 CA C:THR240 4.6 20.2 1.0 PA C:ATP1601 4.6 15.0 1.0 O1B C:ATP1601 4.7 54.2 1.0 O2A C:ATP1601 4.7 68.3 1.0 CG C:ASP296 4.9 56.2 1.0

Magnesium binding site 4 out of 4 in the AVS4 Bound to Phage Phiv-1 Portal


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 4 of AVS4 Bound to Phage Phiv-1 Portal within 5.0Å range: probe atom residue distance (Å) B Occ D:Mg1602 b:42.9 occ:1.00 O2B D:ATP1601 2.1 62.2 1.0 O1G D:ATP1601 2.1 74.1 1.0 OG1 D:THR240 2.8 43.1 1.0 PG D:ATP1601 3.2 58.6 1.0 PB D:ATP1601 3.3 25.8 1.0 O3B D:ATP1601 3.4 49.6 1.0 O3G D:ATP1601 4.0 63.4 1.0 CB D:THR240 4.1 44.3 1.0 O3A D:ATP1601 4.1 49.2 1.0 O2G D:ATP1601 4.4 54.5 1.0 O1B D:ATP1601 4.5 54.4 1.0 OD1 D:ASP296 4.5 60.8 1.0 O1A D:ATP1601 4.6 61.3 1.0 CG2 D:THR240 4.8 38.7 1.0 PA D:ATP1601 4.8 34.9 1.0 OD2 D:ASP296 4.8 65.0 1.0 N D:THR240 4.9 42.9 1.0 O2A D:ATP1601 4.9 59.0 1.0

L.A.Gao, M.E.Wilkinson, J.Strecker, K.S.Makarova, R.K.Macrae, E.V.Koonin, F.Zhang. Prokaryotic Innate Immunity Through Pattern Recognition of Conserved Viral Proteins. Science V. 377 M4096 2022.
ISSN: ESSN 1095-9203
PubMed: 35951700
DOI: 10.1126/SCIENCE.ABM4096