Magnesium in PDB 8dgs: Cryo-Em Structure of A Ras/Raf Complex (State 1)

All present enzymatic activity of Cryo-Em Structure of A Ras/Raf Complex (State 1):
2.7.11.1; 2.7.12.2;

The structure of Cryo-Em Structure of A Ras/Raf Complex (State 1) also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Iodine	(I)	1 atom
Fluorine	(F)	1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of A Ras/Raf Complex (State 1) (pdb code 8dgs). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of A Ras/Raf Complex (State 1), PDB code: 8dgs:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of A Ras/Raf Complex (State 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of A Ras/Raf Complex (State 1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg802 b:250.5 occ:1.00 O3B B:AGS801 2.0 245.3 1.0 O2A B:AGS801 2.0 245.3 1.0 O2G B:AGS801 2.2 245.3 1.0 O05 B:LCJ803 2.3 239.3 1.0 PA B:AGS801 2.4 245.3 1.0 PG B:AGS801 2.4 245.3 1.0 O1A B:AGS801 2.4 245.3 1.0 PB B:AGS801 2.7 245.3 1.0 O3A B:AGS801 2.9 245.3 1.0 O3G B:AGS801 3.1 245.3 1.0 O1B B:AGS801 3.1 245.3 1.0 O03 B:LCJ803 3.3 239.3 1.0 C25 B:LCJ803 3.4 239.3 1.0 OD2 B:ASP208 3.6 248.4 1.0 C24 B:LCJ803 3.7 239.3 1.0 NZ B:LYS97 3.8 227.7 1.0 O5' B:AGS801 4.0 245.3 1.0 OD1 B:ASN195 4.0 254.3 1.0 CG B:ASP208 4.1 248.4 1.0 O2B B:AGS801 4.1 245.3 1.0 S1G B:AGS801 4.2 245.3 1.0 OD1 B:ASP208 4.3 248.4 1.0 OG B:SER194 4.5 253.8 1.0 O B:SER194 4.5 253.8 1.0 N09 B:LCJ803 4.6 239.3 1.0 OD1 B:ASN78 4.6 207.3 1.0 CB B:SER194 4.9 253.8 1.0 CE B:LYS97 4.9 227.7 1.0 C5' B:AGS801 5.0 245.3 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of A Ras/Raf Complex (State 1)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of A Ras/Raf Complex (State 1) within 5.0Å range: probe atom residue distance (Å) B Occ E:Mg201 b:10.8 occ:1.00 O2G E:GNP202 2.0 11.9 1.0 O2B E:GNP202 2.0 10.2 1.0 OG1 E:THR35 2.1 12.0 1.0 OG E:SER17 2.1 11.3 1.0 CB E:THR35 3.1 11.6 1.0 CB E:SER17 3.2 11.4 1.0 PG E:GNP202 3.2 11.4 1.0 PB E:GNP202 3.2 10.5 1.0 N3B E:GNP202 3.4 11.0 1.0 N E:THR35 3.7 11.4 1.0 N E:SER17 3.8 10.6 1.0 CA E:THR35 4.0 12.8 1.0 OD2 E:ASP57 4.0 15.9 1.0 CA E:SER17 4.1 10.5 1.0 O3G E:GNP202 4.1 13.4 1.0 O2A E:GNP202 4.1 13.0 1.0 CG2 E:THR35 4.2 13.2 1.0 O1B E:GNP202 4.3 11.0 1.0 OD1 E:ASP57 4.3 14.7 1.0 O1G E:GNP202 4.3 12.6 1.0 O3A E:GNP202 4.3 11.9 1.0 O E:THR58 4.5 13.1 1.0 O E:ASP33 4.5 14.9 1.0 PA E:GNP202 4.5 11.6 1.0 CG E:ASP57 4.5 15.1 1.0 C E:PRO34 4.7 15.6 1.0 O1A E:GNP202 4.7 12.7 1.0 CB E:LYS16 4.7 9.6 1.0 C E:LYS16 4.9 10.1 1.0 CE E:LYS16 4.9 12.0 1.0 CA E:PRO34 5.0 15.6 1.0

M.J.Eck, H.Jeon, E.Park, S.Rawson. Cryo-Em Structure of A Ras/Raf Complex To Be Published.