Magnesium in PDB 8dgt: Cryo-Em Structure of A Ras/Raf Complex (State 2)

All present enzymatic activity of Cryo-Em Structure of A Ras/Raf Complex (State 2):
2.7.11.1; 2.7.12.2;

The structure of Cryo-Em Structure of A Ras/Raf Complex (State 2) also contains other interesting chemical elements:

Zinc	(Zn)	2 atoms
Iodine	(I)	1 atom
Fluorine	(F)	1 atom

The binding sites of Magnesium atom in the Cryo-Em Structure of A Ras/Raf Complex (State 2) (pdb code 8dgt). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryo-Em Structure of A Ras/Raf Complex (State 2), PDB code: 8dgt:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryo-Em Structure of A Ras/Raf Complex (State 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryo-Em Structure of A Ras/Raf Complex (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg401 b:78.8 occ:1.00 O3A B:AGS402 2.1 92.8 1.0 OD1 B:ASN195 2.2 78.2 1.0 OD2 B:ASP208 2.3 88.9 1.0 PA B:AGS402 2.8 92.8 1.0 O3G B:AGS402 2.8 92.8 1.0 O5' B:AGS402 3.0 92.8 1.0 O1A B:AGS402 3.0 92.8 1.0 CG B:ASP208 3.3 84.7 1.0 CG B:ASN195 3.4 72.0 1.0 PB B:AGS402 3.5 92.8 1.0 O B:SER194 3.6 71.8 1.0 C5' B:AGS402 3.6 92.8 1.0 NZ B:LYS97 3.9 87.8 1.0 O3B B:AGS402 3.9 92.8 1.0 CB B:ASP208 3.9 78.8 1.0 PG B:AGS402 4.0 92.8 1.0 ND2 B:ASN195 4.1 79.5 1.0 C B:SER194 4.2 65.5 1.0 OD1 B:ASP208 4.2 86.4 1.0 O2A B:AGS402 4.2 92.8 1.0 O1B B:AGS402 4.4 92.8 1.0 O2B B:AGS402 4.4 92.8 1.0 CB B:SER194 4.5 73.7 1.0 CB B:ASN195 4.5 73.9 1.0 CA B:ASN195 4.5 67.2 1.0 N B:ASN195 4.6 66.7 1.0 O2G B:AGS402 4.7 92.8 1.0 O03 B:LCJ403 4.9 75.8 1.0

Magnesium binding site 2 out of 2 in the Cryo-Em Structure of A Ras/Raf Complex (State 2)


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryo-Em Structure of A Ras/Raf Complex (State 2) within 5.0Å range: probe atom residue distance (Å) B Occ F:Mg201 b:10.8 occ:1.00 O2G F:GNP202 2.0 11.9 1.0 O2B F:GNP202 2.0 10.2 1.0 OG1 F:THR35 2.1 12.0 1.0 OG F:SER17 2.4 11.3 1.0 CB F:THR35 2.9 11.6 1.0 PG F:GNP202 3.2 11.4 1.0 PB F:GNP202 3.2 10.5 1.0 N3B F:GNP202 3.4 11.0 1.0 CB F:SER17 3.6 11.4 1.0 O F:THR58 3.7 13.1 1.0 OD1 F:ASP57 3.8 14.7 1.0 N F:THR35 3.9 11.4 1.0 CG2 F:THR35 3.9 13.2 1.0 OD2 F:ASP57 3.9 15.9 1.0 N F:SER17 3.9 10.6 1.0 CA F:THR35 4.0 12.8 1.0 O3G F:GNP202 4.1 13.4 1.0 O2A F:GNP202 4.1 13.0 1.0 CG F:ASP57 4.2 15.1 1.0 O1B F:GNP202 4.3 11.0 1.0 O1G F:GNP202 4.3 12.6 1.0 CA F:SER17 4.3 10.5 1.0 O3A F:GNP202 4.3 11.9 1.0 CE F:LYS16 4.3 12.0 1.0 CB F:LYS16 4.4 9.6 1.0 PA F:GNP202 4.5 11.6 1.0 NZ F:LYS16 4.6 12.1 1.0 O1A F:GNP202 4.7 12.7 1.0 C F:THR58 4.7 13.6 1.0 C F:LYS16 4.8 10.1 1.0 C F:PRO34 5.0 15.6 1.0

M.J.Eck, H.Jeon, E.Park, S.Rawson. Cryo-Em Structure of A Ras/Raf Complex To Be Published.