Magnesium in PDB 8dne: Cryoem Structure of the A.Aeolicus Wzmwzt Transporter Bound to Atp

The binding sites of Magnesium atom in the Cryoem Structure of the A.Aeolicus Wzmwzt Transporter Bound to Atp (pdb code 8dne). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total 2 binding sites of Magnesium where determined in the Cryoem Structure of the A.Aeolicus Wzmwzt Transporter Bound to Atp, PDB code: 8dne:
Jump to Magnesium binding site number: 1; 2;

Magnesium binding site 1 out of 2 in the Cryoem Structure of the A.Aeolicus Wzmwzt Transporter Bound to Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Cryoem Structure of the A.Aeolicus Wzmwzt Transporter Bound to Atp within 5.0Å range: probe atom residue distance (Å) B Occ A:Mg501 b:38.6 occ:1.00 O1G A:ATP502 2.0 42.5 1.0 O1B A:ATP502 2.0 42.5 1.0 OG A:SER61 2.3 27.2 1.0 PB A:ATP502 2.8 42.5 1.0 O2B A:ATP502 3.1 42.5 1.0 PG A:ATP502 3.1 42.5 1.0 O3B A:ATP502 3.2 42.5 1.0 CB A:SER61 3.3 27.2 1.0 O2G A:ATP502 3.9 42.5 1.0 O3A A:ATP502 4.3 42.5 1.0 O3G A:ATP502 4.3 42.5 1.0 N A:SER61 4.4 27.2 1.0 CA A:SER61 4.4 27.2 1.0 OD2 A:ASP166 4.8 57.2 1.0 CB C:SER143 4.8 50.0 1.0

Magnesium binding site 2 out of 2 in the Cryoem Structure of the A.Aeolicus Wzmwzt Transporter Bound to Atp


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 2 of Cryoem Structure of the A.Aeolicus Wzmwzt Transporter Bound to Atp within 5.0Å range: probe atom residue distance (Å) B Occ C:Mg501 b:43.0 occ:1.00 O1G C:ATP502 1.8 44.6 1.0 OG C:SER61 2.2 32.0 1.0 O1B C:ATP502 2.6 44.6 1.0 PG C:ATP502 3.0 44.6 1.0 CB C:SER61 3.2 32.0 1.0 O2G C:ATP502 3.4 44.6 1.0 O3B C:ATP502 3.4 44.6 1.0 PB C:ATP502 3.6 44.6 1.0 O2A C:ATP502 4.0 44.6 1.0 OE2 C:GLU167 4.2 69.0 1.0 O3G C:ATP502 4.2 44.6 1.0 N C:SER61 4.3 32.0 1.0 CA C:SER61 4.3 32.0 1.0 O3A C:ATP502 4.3 44.6 1.0 PA C:ATP502 4.5 44.6 1.0 O1A C:ATP502 4.5 44.6 1.0 CB A:SER143 4.9 55.1 1.0 O2B C:ATP502 4.9 44.6 1.0 N A:SER144 5.0 54.8 1.0

N.Spellmon, A.Muszynski, I.Gorniak, J.Vlach, D.Hahn, P.Azadi, J.Zimmer. Molecular Basis For Polysaccharide Recognition and Modulated Atp Hydrolysis By the O Antigen Abc Transporter. Nat Commun V. 13 5226 2022.
ISSN: ESSN 2041-1723
PubMed: 36064941
DOI: 10.1038/S41467-022-32597-2