Magnesium in PDB 8dos: Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae

Enzymatic activity of Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae

All present enzymatic activity of Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae:
1.18.1.2; 1.19.1.1;

Protein crystallography data

The structure of Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae, PDB code: 8dos was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.37 / 1.87
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 47.24, 56.02, 56.11, 106.69, 97.49, 83.4
R / Rfree (%) 17.1 / 20.4

Other elements in 8dos:

The structure of Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae (pdb code 8dos). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae, PDB code: 8dos:

Magnesium binding site 1 out of 1 in 8dos

Go back to Magnesium Binding Sites List in 8dos
Magnesium binding site 1 out of 1 in the Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Mg505

b:23.6
occ:1.00
 O2B A:FAD501 2.2 26.0 1.0
O A:HOH662 2.4 28.9 1.0
O B:HOH753 2.4 29.4 1.0
O B:HOH652 2.6 17.2 1.0
O3B A:FAD501 2.7 25.9 1.0
C2B A:FAD501 3.3 26.4 1.0
C3B A:FAD501 3.3 26.9 1.0
O B:HOH754 3.5 21.8 1.0
C4B A:FAD501 3.5 27.5 1.0
O B:HOH630 3.6 20.6 1.0
O B:HOH750 3.8 17.3 1.0
C1B A:FAD501 4.3 20.9 1.0
NH2 B:ARG144 4.4 29.1 1.0
O1A B:NAP502 4.4 24.6 1.0
O B:HOH676 4.4 20.5 1.0
O B:HOH706 4.4 26.4 1.0
C5B A:FAD501 4.5 28.1 1.0
O4B A:FAD501 4.5 25.3 1.0
O A:HOH749 4.6 28.5 1.0
NE1 A:TRP248 4.6 16.1 1.0
O B:HOH727 4.8 32.7 1.0
CD1 A:TRP248 4.9 17.8 1.0
O B:HOH733 5.0 21.4 1.0

Reference:

S.Lovell, L.Liu, S.Seibold, K.P.Battaile. Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae To Be Published.
Page generated: Fri Apr 7 09:00:56 2023

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