Magnesium in PDB 8dp2: Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine- 5'-Diphosphate-N-Acetylmuramoyl-L-Alanine)

Enzymatic activity of Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine- 5'-Diphosphate-N-Acetylmuramoyl-L-Alanine)

All present enzymatic activity of Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine- 5'-Diphosphate-N-Acetylmuramoyl-L-Alanine):
6.3.2.9;

Protein crystallography data

The structure of Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine- 5'-Diphosphate-N-Acetylmuramoyl-L-Alanine), PDB code: 8dp2 was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	41.34 / 1.60
*Space group*	P 6₁
*Cell size a, b, c (Å), α, β, γ (°)*	95.46, 95.46, 99.55, 90, 90, 120
*R / R_free (%)*	15 / 16.9

Magnesium Binding Sites:

The binding sites of Magnesium atom in the Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine- 5'-Diphosphate-N-Acetylmuramoyl-L-Alanine) (pdb code 8dp2). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine- 5'-Diphosphate-N-Acetylmuramoyl-L-Alanine), PDB code: 8dp2:

Magnesium binding site 1 out of 1 in 8dp2

Go back to

Magnesium Binding Sites List in 8dp2

Magnesium binding site 1 out of 1 in the Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine- 5'-Diphosphate-N-Acetylmuramoyl-L-Alanine)

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine- 5'-Diphosphate-N-Acetylmuramoyl-L-Alanine) within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg502 b:21.0 occ:1.00	O	A:HOH648	2.0	19.1	1.0
	O20	A:UMA501	2.1	24.5	1.0
	O	A:HOH652	2.1	19.9	1.0
	NE2	A:HIS188	2.2	20.9	1.0
	O	A:HOH664	2.2	24.9	1.0
	O	A:HOH608	2.3	27.0	1.0
	CE1	A:HIS188	3.0	23.0	1.0
	C22	A:UMA501	3.1	30.5	1.0
	CD2	A:HIS188	3.3	17.4	1.0
	O19	A:UMA501	3.5	28.6	1.0
	OD2	A:ASP187	3.8	17.0	1.0
	O3	A:SIN507	3.9	37.2	1.0
	NZ	A:LYS120	4.0	20.7	1.0
	OQ1	A:KCX202	4.0	17.3	1.0
	O	A:HOH727	4.1	24.8	1.0
	O	A:HOH757	4.1	18.5	1.0
	ND1	A:HIS188	4.2	19.6	1.0
	OQ2	A:KCX202	4.2	17.2	1.0
	C21	A:UMA501	4.3	20.7	1.0
	CG	A:HIS188	4.3	17.7	1.0
	C23	A:UMA501	4.4	24.4	1.0
	O	A:HOH679	4.5	41.0	1.0
	CX	A:KCX202	4.6	16.4	1.0
	C4	A:SIN507	4.6	30.8	1.0
	CG	A:ASP187	4.6	15.7	1.0
	O4	A:SIN507	4.9	30.7	1.0
	CE	A:LYS120	4.9	17.3	1.0

Reference:

J.Abendroth, N.D.Debouver, D.D.Lorimer, P.S.Horanyi, T.E.Edwards. Crystal Structure of Udp-N-Acetylmuramoylalanine--D-Glutamate Ligase (Murd) From Pseudomonas Aeruginosa PAO1 in Complex with Uma (Uridine-5'-Diphosphate-N-Acetylmuramoyl-L-Alanine) To Be Published.

Page generated: Fri Oct 4 00:47:33 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy