Magnesium in PDB 8dq5: X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant

Enzymatic activity of X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant

All present enzymatic activity of X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant:
1.17.4.1;

Protein crystallography data

The structure of X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant, PDB code: 8dq5 was solved by H.R.Rose, A.K.Boal, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	46.57 / 2.10
*Space group*	P 3₁
*Cell size a, b, c (Å), α, β, γ (°)*	53.771, 53.771, 221.288, 90, 90, 120
*R / R_free (%)*	24.7 / 28.2

Other elements in 8dq5:

The structure of X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant also contains other interesting chemical elements:

Manganese

(Mn)

4 atoms

Magnesium Binding Sites:

The binding sites of Magnesium atom in the X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant (pdb code 8dq5). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant, PDB code: 8dq5:

Magnesium binding site 1 out of 1 in 8dq5

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Magnesium Binding Sites List in 8dq5

Magnesium binding site 1 out of 1 in the X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant

Mono view

Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Mg403 b:37.5 occ:1.00	OD1	B:ASN76	2.0	48.3	1.0
	OD1	A:ASN76	2.0	42.4	1.0
	CG	B:ASN76	3.2	39.9	1.0
	CG	A:ASN76	3.2	33.4	1.0
	O	B:GLY75	3.3	22.6	1.0
	O	A:GLY75	3.4	17.8	1.0
	ND2	B:ASN76	3.9	36.8	1.0
	ND2	A:ASN76	4.0	30.8	1.0
	C	B:GLY75	4.1	24.8	1.0
	C	A:GLY75	4.2	21.0	1.0
	CB	B:ASN76	4.2	35.0	1.0
	CB	A:ASN76	4.2	20.2	1.0
	CA	B:ASN76	4.3	32.8	1.0
	CA	A:ASN76	4.3	23.9	1.0
	N	B:ASN76	4.5	25.8	1.0
	N	A:ASN76	4.6	17.5	1.0
	OE2	A:GLU79	4.9	43.1	1.0

Reference:

H.R.Rose, A.K.Boal. X-Ray Crystal Structure of Flavobacterium Johnsoniae Dimanganese(II) Class Id Ribonucleotide Reductase T191I Variant To Be Published.

Page generated: Thu Dec 28 08:59:47 2023

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