Magnesium in PDB 8edb: 5'-Cgcgaattcgcg-3' and An at-Specific Binder (DB1884) Complex

The structure of 5'-Cgcgaattcgcg-3' and An at-Specific Binder (DB1884) Complex, PDB code: 8edb was solved by E.N.Ogbonna, W.D.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.24 / 1.55
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	25.77, 39.76, 65.35, 90, 90, 90
R / Rfree (%)	20 / 21.6

The binding sites of Magnesium atom in the 5'-Cgcgaattcgcg-3' and An at-Specific Binder (DB1884) Complex (pdb code 8edb). This binding sites where shown within 5.0 Angstroms radius around Magnesium atom.
In total only one binding site of Magnesium was determined in the 5'-Cgcgaattcgcg-3' and An at-Specific Binder (DB1884) Complex, PDB code: 8edb:

Magnesium binding site 1 out of 1 in the 5'-Cgcgaattcgcg-3' and An at-Specific Binder (DB1884) Complex


Mono view


Stereo pair view

A full contact list of Magnesium with other atoms in the Mg binding site number 1 of 5'-Cgcgaattcgcg-3' and An at-Specific Binder (DB1884) Complex within 5.0Å range: probe atom residue distance (Å) B Occ B:Mg102 b:30.0 occ:1.00 O B:HOH212 2.0 18.4 1.0 O B:HOH230 2.1 19.6 1.0 O C:HOH109 2.1 18.0 1.0 H5 B:DC1 4.0 21.5 1.0 O B:HOH243 4.1 25.8 1.0 O C:HOH119 4.2 23.4 1.0 O6 C:DG22 4.2 16.2 1.0 O C:HOH131 4.3 20.6 1.0 O6 B:DG2 4.4 16.9 1.0 N7 B:DG2 4.4 16.9 1.0 C5 B:DC1 4.5 17.9 1.0 H6 B:DC1 4.8 22.9 1.0 H42 B:DC3 4.8 21.4 1.0 C6 B:DC1 4.9 19.1 1.0

E.N.Ogbonna, A.Paul, A.Faharat, J.R.Terrell, V.Ogbonna, D.W.Boykin, W.D.Wilson. X-Ray Structure Characterization of the Selective Recognition of at Base Pair Sequences Acs Bio Med Chem Au 2023.
ISSN: ESSN 2694-2437